BAC Information

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BAC

Clone NameB6Ng01-042P20
Chromosome10 (Build37)
Map Location 102,570,440 - 102,678,848
singlet/doubletdoublet
Overlap geneLrriq1
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1
Downstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042P20.bB6Ng01-042P20.g
ACCDH869190DH869191
length1,1731,026
definitionDH869190|Mus musculus domesticus DNA, BAC clone: B6Ng01-042P20, 5' end.DH869191|Mus musculus domesticus DNA, BAC clone: B6Ng01-042P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,677,663 - 102,678,848)(102,570,440 - 102,571,545)
sequence
gaattctagagcactttcacccgtcatttagggtttatagtacatttagt
acacttacaaagttacagatttacctgatgctcataactatgtctgtttt
aggaacatatcagaaacttgcacttaaaaatggaggaggagagaacaaga
ttaagtgagctacaagaaaaagaaaaggcacgtttattcaaactgcggta
tgatgcagctgtaaaaattcaagccacttatagagcatcagtaacttacc
gaaaatatagcccaatcataaaagagcaaatggaaaagaagaggaggaga
gcacaggagttgaaagagaaggaggcaaagatacgacagaaggaggaaga
aaagaggaggagacttgaagaggagcagagggtagaggaggagaagaaga
agaagatgctggaggagaggaggagacgagagagggaatacgaagagaaa
aagagcatcctgagacaagagagagaagagcaacgaagcaaggaagtgat
aagactgagggaacatgcccactcgccactgatcattacctgtgctttaa
agaaaggagattgccatggcaagcagcaagctattgcacatgtgccaaag
ggtaagggtactatagccaaagagtcagtggacagcaactcaaagaagca
agaagatgcttgcctcgctcagcaattaaacaagagagaaaacacacacg
tgcagcagcttgcgatgaagaaatcaacaggaataaaattaaaaccaaac
caggcaattttggtagaattaaaaatgaacgagaaaaatgaaagtttacc
aaaattaaaaatcaatgaaaacttatcaaaaaaccaatgttcagaacaac
cttctgaccaagaatttaacgctgaaaatgtagaccaaaaaaatgaattg
gaaaactccaacctaaggaaagtgtgaatgaacagtacccgtggcaagga
ctagagtcagatactcagacagaggaacatgtggagcatgtcaggagaga
agtgggacagaaccgaaaactatttggattcatcagagtgagtgcagaga
cagtaaacagcacagagtcatgaagagaacctgggagggattgctgaaga
gatagaaatcaaagagatgacacaggcaaggtggtcaatcggagtagaaa
taataggcctacctattccatgc
gaattctttctttcccaagtatgtattcgtcatggtgtttcatcacagca
atagtaactaagacactggttctggtttgcttttattttattttacttta
cccattattttagatccttattttattttctctgagaaggaggaaatgga
gcggtagatttgggtagacaggcatgtggggaggatctgaaggaggaaaa
actattatcaggacatattgtatggaaaaatctatttcaattcaaaacat
aaaaattaatttacaacatgaaaagaatgcttatattatcatcgttgttt
atatagaaatattttctttagcaacagataatataattatccaaagctac
catcaatatatagtctgggggtggagagatggttaagctgttaagagcac
cgactactcttccagaagtcctgagttcaattctcagcaaccacaaggtg
gctcacaaccatcagtaatggaatctgatgccatctagtggtgtatctga
ccacagctacagtgtcttcatattcttaaatacataattctttaaagaaa
gaatcataatccttgaactttaataattaggatttcagtgaattttaagt
aaattgcttcagcttttattgagcacttactatatagcaggaatttttct
tttttctttttttttctttttattaggtattttcttcatttacatttcca
atgttaccccaaaagtcccccataccctaacctccctcccctaaccgcct
cccacttcttggccctggtgttcccctgtactgaggcatataaagtttgc
aagaccaatgggtctctctttccactgatggccgactaggccatcttctg
atacatatgcagctagagacatgagctcttgggggtattggttagttcat
attggttgttccacctatagggttgcagaagccttcccaagctcttttgg
tactttctctagctcctcataaagtatagtttatggactctacagaagtc
ctaacttttaagtcaggaaatgaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_102677663_102678848
seq2: B6Ng01-042P20.b_45_1217 (reverse)

seq1  GCATGGAAATAGGT-GAGCTATTA-TTCTCATCCGATGGCCCACCTTG-C  47
      |||||| ||||||| |  |||||| ||||  |||||| | |||||||| |
seq2  GCATGG-AATAGGTAGGCCTATTATTTCTACTCCGATTGACCACCTTGCC  49

seq1  TGTGTCATCTCTTTGATTTCTATCTCTTCAGCCAATCCCTCCCGGGTCTC  97
      ||||||||||||||||||||||||||||||| ||||||||||| |||   
seq2  TGTGTCATCTCTTTGATTTCTATCTCTTCAG-CAATCCCTCCCAGGTTCT  98

seq1  CTCCATGACTCCTTGTGCTTGTTTACTGTCTTCTGCACTCACTTCTTGAT  147
      || ||||||||  ||||| ||||||||||| ||||||||||||   ||| 
seq2  CTTCATGACTC--TGTGC-TGTTTACTGTC-TCTGCACTCACT--CTGA-  141

seq1  TGAATCCAAATAGTTTTTCGGTTTCTTGTCCCACCTTCTCCTCCCTGACA  197
      ||||||||||||| |||||||||   ||||||| ||||||   |||||||
seq2  TGAATCCAAATAG-TTTTCGGTT--CTGTCCCA-CTTCTC--TCCTGACA  185

seq1  TGCTCCACATGTTCCTCTGTCTGAGTATCTGACTCTAGTCCTTGCCACGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACATGTTCCTCTGTCTGAGTATCTGACTCTAGTCCTTGCCACGG  235

seq1  GTACTGTTCATTCACACTTTCCTTTAGGTTGGAGTTTTCCAATTCATTTT  297
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTACTGTTCATTCACACTTTCC-TTAGGTTGGAGTTTTCCAATTCATTTT  284

seq1  TTTGGTCTACATTTTCAGCGTTAAATTCTTGGTCAGAAGGTTGTTCTGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTACATTTTCAGCGTTAAATTCTTGGTCAGAAGGTTGTTCTGAA  334

seq1  CATTGGTTTTTTGATAAGTTTTCATTGATTTTTAATTTTGGTAAACTTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTTTTTTGATAAGTTTTCATTGATTTTTAATTTTGGTAAACTTTC  384

seq1  ATTTTTCTCGTTCATTTTTAATTCTACCAAAATTGCCTGGTTTGGTTTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCGTTCATTTTTAATTCTACCAAAATTGCCTGGTTTGGTTTTA  434

seq1  ATTTTATTCCTGTTGATTTCTTCATCGCAAGCTGCTGCACGTGTGTGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTCCTGTTGATTTCTTCATCGCAAGCTGCTGCACGTGTGTGTTT  484

seq1  TCTCTCTTGTTTAATTGCTGAGCGAGGCAAGCATCTTCTTGCTTCTTTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTGTTTAATTGCTGAGCGAGGCAAGCATCTTCTTGCTTCTTTGA  534

seq1  GTTGCTGTCCACTGACTCTTTGGCTATAGTACCCTTACCCTTTGGCACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTCCACTGACTCTTTGGCTATAGTACCCTTACCCTTTGGCACAT  584

seq1  GTGCAATAGCTTGCTGCTTGCCATGGCAATCTCCTTTCTTTAAAGCACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATAGCTTGCTGCTTGCCATGGCAATCTCCTTTCTTTAAAGCACAG  634

seq1  GTAATGATCAGTGGCGAGTGGGCATGTTCCCTCAGTCTTATCACTTCCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATCAGTGGCGAGTGGGCATGTTCCCTCAGTCTTATCACTTCCTT  684

seq1  GCTTCGTTGCTCTTCTCTCTCTTGTCTCAGGATGCTCTTTTTCTCTTCGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGTTGCTCTTCTCTCTCTTGTCTCAGGATGCTCTTTTTCTCTTCGT  734

seq1  ATTCCCTCTCTCGTCTCCTCCTCTCCTCCAGCATCTTCTTCTTCTTCTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCTCTCGTCTCCTCCTCTCCTCCAGCATCTTCTTCTTCTTCTCC  784

seq1  TCCTCTACCCTCTGCTCCTCTTCAAGTCTCCTCCTCTTTTCTTCCTCCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACCCTCTGCTCCTCTTCAAGTCTCCTCCTCTTTTCTTCCTCCTT  834

seq1  CTGTCGTATCTTTGCCTCCTTCTCTTTCAACTCCTGTGCTCTCCTCCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGTATCTTTGCCTCCTTCTCTTTCAACTCCTGTGCTCTCCTCCTCT  884

seq1  TCTTTTCCATTTGCTCTTTTATGATTGGGCTATATTTTCGGTAAGTTACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCATTTGCTCTTTTATGATTGGGCTATATTTTCGGTAAGTTACT  934

seq1  GATGCTCTATAAGTGGCTTGAATTTTTACAGCTGCATCATACCGCAGTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTATAAGTGGCTTGAATTTTTACAGCTGCATCATACCGCAGTTT  984

seq1  GAATAAACGTGCCTTTTCTTTTTCTTGTAGCTCACTTAATCTTGTTCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACGTGCCTTTTCTTTTTCTTGTAGCTCACTTAATCTTGTTCTCT  1034

seq1  CCTCCTCCATTTTTAAGTGCAAGTTTCTGATATGTTCCTAAAACAGACAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCATTTTTAAGTGCAAGTTTCTGATATGTTCCTAAAACAGACAT  1084

seq1  AGTTATGAGCATCAGGTAAATCTGTAACTTTGTAAGTGTACTAAATGTAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAGCATCAGGTAAATCTGTAACTTTGTAAGTGTACTAAATGTAC  1134

seq1  TATAAACCCTAAATGACGGGTGAAAGTGCTCTAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||
seq2  TATAAACCCTAAATGACGGGTGAAAGTGCTCTAGAATTC  1173

seq1: chr10_102570440_102571545
seq2: B6Ng01-042P20.g_68_1093

seq1  GAATTCTTTCTTTCCCAAGTATGTATTCGTCATGGTGTTTCATCACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTCCCAAGTATGTATTCGTCATGGTGTTTCATCACAGCA  50

seq1  ATAGTAACTAAGACACTGGTTCTGGTTTGCTTTTATTTTATTTTACTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACTAAGACACTGGTTCTGGTTTGCTTTTATTTTATTTTACTTTA  100

seq1  CCCATTATTTTAGATCCTTATTTTATTTTCTCTGAGAAGGAGGAAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTATTTTAGATCCTTATTTTATTTTCTCTGAGAAGGAGGAAATGGA  150

seq1  GCGGTAGATTTGGGTAGACAGGCATGTGGGGAGGATCTGAAGGAGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTAGATTTGGGTAGACAGGCATGTGGGGAGGATCTGAAGGAGGAAAA  200

seq1  ACTATTATCAGGACATATTGTATGGAAAAATCTATTTCAATTCAAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATCAGGACATATTGTATGGAAAAATCTATTTCAATTCAAAACAT  250

seq1  AAAAATTAATTTACAACATGAAAAGAATGCTTATATTATCATCGTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAATTTACAACATGAAAAGAATGCTTATATTATCATCGTTGTTT  300

seq1  ATATAGAAATATTTTCTTTAGCAACAGATAATATAATTATCCAAAGCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAATATTTTCTTTAGCAACAGATAATATAATTATCCAAAGCTAC  350

seq1  CATCAATATATAGTCTGGGGGTGGAGAGATGGTTAAGCTGTTAAGAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATATATAGTCTGGGGGTGGAGAGATGGTTAAGCTGTTAAGAGCAC  400

seq1  CGACTACTCTTCCAGAAGTCCTGAGTTCAATTCTCAGCAACCACAAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTACTCTTCCAGAAGTCCTGAGTTCAATTCTCAGCAACCACAAGGTG  450

seq1  GCTCACAACCATCAGTAATGGAATCTGATGCCATCTAGTGGTGTATCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACCATCAGTAATGGAATCTGATGCCATCTAGTGGTGTATCTGA  500

seq1  CCACAGCTACAGTGTCTTCATATTCTTAAATACATAATTCTTTAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTACAGTGTCTTCATATTCTTAAATACATAATTCTTTAAAGAAA  550

seq1  GAATCATAATCCTTGAACTTTAATAATTAGGATTTCAGTGAATTTTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATAATCCTTGAACTTTAATAATTAGGATTTCAGTGAATTTTAAGT  600

seq1  AAATTGCTTCAGCTTTTATTGAGCACTTACTATATAGCAGGAATTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTTCAGCTTTTATTGAGCACTTACTATATAGCAGGAATTTTTCT  650

seq1  TTTTTCTTTTTTTTTCTTTTTATTAGGTATTTTCTTCATTTACATTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTTTTTCTTTTTATTAGGTATTTTCTTCATTTACATTTCCA  700

seq1  ATGTTACCCCAAAAGTCCCCCATACCCTAACCTCCCTCCCCTAACCGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCCCAAAAGTCCCCCATACCCTAACCTCCCTCCCCTAACCGCCT  750

seq1  CCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTTGC  800

seq1  AAGACCAATGGGTCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAATGGGTCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTCTG  850

seq1  ATACATATGCAGCTAGAGACATGAGCTC-TGGGGGTATTGGTTAGTTCAT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATACATATGCAGCTAGAGACATGAGCTCTTGGGGGTATTGGTTAGTTCAT  900

seq1  ATT-GTTGTTCCACCTATAGGGTTGCAG-AGCC-TCCCAAGCTCTTTGGG  946
      ||| |||||||||||||||||||||||| |||| ||||||||||||| ||
seq2  ATTGGTTGTTCCACCTATAGGGTTGCAGAAGCCTTCCCAAGCTCTTTTGG  950

seq1  TACTTTCTCTAGCTCCTCAATAAAGTATAG-TTAT-GACACTACAG-AGT  993
      |||||||||||||||||| ||||||||||| |||| ||| |||||| |||
seq2  TACTTTCTCTAGCTCCTC-ATAAAGTATAGTTTATGGACTCTACAGAAGT  999

seq1  CCTAAACTTTAAG-CAGGATATGAAAAATAATTACTTAACACATACTACA  1042
      |||||  |||||| ||||| |||||||                       
seq2  CCTAACTTTTAAGTCAGGAAATGAAAA-----------------------  1026

seq1  CAGAAAATTTAGCACAATAGATAAGCACCAAAGATATGTTAGTCCTAGGA  1092
                                                        
seq2  --------------------------------------------------  1026

seq1  GTAACAAATGAAAA  1106
                    
seq2  --------------  1026