BAC Information

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BAC

Clone NameB6Ng01-043E10
Chromosome10 (Build37)
Map Location 114,008,853 - 114,102,578
singlet/doubletdoublet
Overlap geneTrhde
Upstream geneLOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043E10.bB6Ng01-043E10.g
ACCDH869388DH869389
length2711,175
definitionDH869388|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E10, 5' end.DH869389|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,102,308 - 114,102,578)(114,008,853 - 114,010,058)
sequence
aagaagacagtagatgtagcatcctaaagacttgtcttactattttcgag
ccggcagataatatatacagtggcaacaaagacagtcagtcctttcaaag
tttagtcttattgtagcggtgcttttattcctatattgccctttgtgtaa
cgggtagtgacagcatcatggtggtaatggtagtggtggtagttatggtg
tttttggtagtgttgttgttggtagtggtggaattgatagttgtggaagt
cagtgatggcggtgtaggtgt
gaattctttaacacatcattaactatcaaggtaattatactccttgatgc
ttccaagtggctcccaacctcacatgtcaagtctaagggattacatgaga
caatggctgctctagacacagtcactgaatttggactgtcaaggaagaag
gaaagttaaagctgttggctacttcctacataaaagataaggaatgttaa
tggggtgcaatatcaatcaggagtttttactctgtctgattggctgaaac
ttgtgtcttccttgagaatttttctactttctatatgtctatgaatatct
tatcactacatgagttgtctcagtcttgtcccttatcttcctgctctttg
gtttgaagctgcattctctgatccctatgcaaagacttctctccccctcc
ccctttttccctgtctcctatctgaacataatgactcttctgatattcct
ttgacaaaagagtcctaggactgggtgggaatacctgcctttctctgggc
atacaacttctgagaccacacaaacttttgagatctcagtatcttcattt
atgtacatttactgttgcggagattaaatgagtgaattagctctacgtat
atttgttaagcacctgctgtattccagatggaaagcttgcttctaaggat
agacagaacaatgaatcctagattcaaagtctgtgtagtagtagaaagag
aaacacagatcaaaacagacaataaaatacaaccggtttatatgtgagac
tggaagtggactcaggataccgaatggctacattgagagagttatgattt
gttatgcctgagggaaggagggaaagcttctaagcaagagtttaaattga
atttttaagaattatttaagtattctaggaataaatgacagtaaaggaca
tttatggcaaaggggaatttgttaaaattcaagaaagcttctagcatagt
ttcttgagagtgtggttcagagagtttgtatgcacagtaagagcaaacca
cagtgatgacagagagccacagacaaaatcatcagttccttggaaattgt
agttatattgacattatgagacctttgaaagtcttgaggtagggatggct
gactagagcaaggcacctagaagagaaactgaaatattgcccatctgaaa
aagccacaaaaggacctttctttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114102308_114102578
seq2: B6Ng01-043E10.b_52_322 (reverse)

seq1  ACACCAACACCACCATCACTAACTACCACAACTATCACTACCACCACTAC  50
      ||||| ||||| |||||||| ||| |||||||||||| | ||||||||||
seq2  ACACCTACACCGCCATCACTGACTTCCACAACTATCAATTCCACCACTAC  50

seq1  CAACAACAACACTACCAAAAACACCATAACTACCACCACTACCATTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACACTACCAAAAACACCATAACTACCACCACTACCATTACCA  100

seq1  CCATGATGCTGTCACTACCCGTTACACAAAGGGCAATATAGGAATAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGCTGTCACTACCCGTTACACAAAGGGCAATATAGGAATAAAAG  150

seq1  CACCGCTACAATAAGACTAAACTTTGAAAGGACTGACTGTCTTTGTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCTACAATAAGACTAAACTTTGAAAGGACTGACTGTCTTTGTTGCC  200

seq1  ACTGTATATATTATCTGCCGGCTCGAAAATAGTAAGACAAGTCTTTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATATATTATCTGCCGGCTCGAAAATAGTAAGACAAGTCTTTAGGA  250

seq1  TGCTACATCTACTGTCTTCTT  271
      |||||||||||||||||||||
seq2  TGCTACATCTACTGTCTTCTT  271

seq1: chr10_114008853_114010058
seq2: B6Ng01-043E10.g_69_1243

seq1  GAATTCTTTAACACATCATTAACTATCAAGGTAATTATACTCCTTGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACACATCATTAACTATCAAGGTAATTATACTCCTTGATGC  50

seq1  TTCCAAGTGGCTCCCAACCTCACATGTCAAGTCTAAGGGATTACATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTGGCTCCCAACCTCACATGTCAAGTCTAAGGGATTACATGAGA  100

seq1  CAATGGCTGCTCTAGACACAGTCACTGAATTTGGACTGTCAAGGAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTGCTCTAGACACAGTCACTGAATTTGGACTGTCAAGGAAGAAG  150

seq1  GAAAGTTAAAGCTGTTGGCTACTTCCTACATAAAAGATAAGGAATGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTAAAGCTGTTGGCTACTTCCTACATAAAAGATAAGGAATGTTAA  200

seq1  TGGGGTGCAATATCAATCAGGAGTTTTTACTCTGTCTGATTGGCTGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGCAATATCAATCAGGAGTTTTTACTCTGTCTGATTGGCTGAAAC  250

seq1  TTGTGTCTTCCTTGAGAATTTTTCTACTTTCTATATGTCTATGAATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTTCCTTGAGAATTTTTCTACTTTCTATATGTCTATGAATATCT  300

seq1  TATCACTACATGAGTTGTCTCAGTCTTGTCCCTTATCTTCCTGCTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTACATGAGTTGTCTCAGTCTTGTCCCTTATCTTCCTGCTCTTTG  350

seq1  GTTTGAAGCTGCATTCTCTGATCCCTATGCAAAGACTTCTCTCCCCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGCTGCATTCTCTGATCCCTATGCAAAGACTTCTCTCCCCCTCC  400

seq1  CCCTTTTTCCCTGTCTCCTATCTGAACATAATGACTCTTCTGATATTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTCCCTGTCTCCTATCTGAACATAATGACTCTTCTGATATTCCT  450

seq1  TTGACAAAAGAGTCCTAGGACTGGGTGGGAATACCTGCCTTTCTCTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAAAGAGTCCTAGGACTGGGTGGGAATACCTGCCTTTCTCTGGGC  500

seq1  ATACAACTTCTGAGACCACACAAACTTTTGAGATCTCAGTATCTTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACTTCTGAGACCACACAAACTTTTGAGATCTCAGTATCTTCATTT  550

seq1  ATGTACATTTACTGTTGCGGAGATTAAATGAGTGAATTAGCTCTACGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATTTACTGTTGCGGAGATTAAATGAGTGAATTAGCTCTACGTAT  600

seq1  ATTTGTTAAGCACCTGCTGTATTCCAGATGGAAAGCTTGCTTCTAAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTAAGCACCTGCTGTATTCCAGATGGAAAGCTTGCTTCTAAGGAT  650

seq1  AGACAGAACAATGAATCCTAGATTCAAAGTCTGTGTAGTAGTAGAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAACAATGAATCCTAGATTCAAAGTCTGTGTAGTAGTAGAAAGAG  700

seq1  AAACACAGATCAAAACAGACAATAAAATACAACCGGTTTATATGTGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGATCAAAACAGACAATAAAATACAACCGGTTTATATGTGAGAC  750

seq1  TGGAAGTGGACTCAGGATACCGAATGGCTACATTGAGAGAGTTATGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGGACTCAGGATACCGAATGGCTACATTGAGAGAGTTATGATTT  800

seq1  GTTATGCCTGAGGGAAGGAGGGAAAGCTTCTAAGCAAGAGTTTAAATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCCTGAGGGAAGGAGGGAAAGCTTCTAAGCAAGAGTTTAAATTGA  850

seq1  ATTTTTAAGAATTATTTAAGTATTCTAGGAATAAATGACAGTAAAGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAGAATTATTTAAGTATTCTAGGAATAAATGACAGTAAAGGACA  900

seq1  TTTATGGCAAAGGGGAATTTGTTAAAAATTCAAGGAAAGCTTCTAGCATA  950
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  TTTATGGCAAAGGGGAATTTGTT-AAAATTCAA-GAAAGCTTCTAGCATA  948

seq1  GTTTCTTGGAGAGTGTGGTTCAGAGAGGTTTGTATGGCACAAGGTAAGGA  1000
      ||||||| |||||||||||||||||| |||||||| |||||  |||| ||
seq2  GTTTCTT-GAGAGTGTGGTTCAGAGA-GTTTGTAT-GCACA--GTAA-GA  992

seq1  GCAAACCACAAGTGATGACAGAGAGGCCCACAGGAACAAAATCATCAAGT  1050
      ||||||||| |||||||||||||||  ||||||  ||||||||||| |||
seq2  GCAAACCAC-AGTGATGACAGAGAG--CCACAG--ACAAAATCATC-AGT  1036

seq1  TCCCTTGGAAATTGTAGTTATA-TGACATTATGAGACCTTTGAGAAGTCT  1099
      | |||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  T-CCTTGGAAATTGTAGTTATATTGACATTATGAGACCTTTGA-AAGTCT  1084

seq1  GAAGGGTAGGGGATTGCTGGACTAGAGCAAAGGGCAACTAGAAAGAGAAA  1149
        | |||| ||||| ||| |||||||||||  |||| |||| ||||||||
seq2  TGA-GGTA-GGGATGGCT-GACTAGAGCAA--GGCACCTAG-AAGAGAAA  1128

seq1  CTGAAAATTATTGCGCATCTGAGAAGAAAGAGCACACAAAAAGGACCTTA  1199
      ||||||  |||||| |||||     |||| ||| ||| ||||||||||| 
seq2  CTGAAA--TATTGCCCATCT-----GAAAAAGC-CAC-AAAAGGACCTT-  1168

seq1  TCTTTGT  1206
      |||||||
seq2  TCTTTGT  1175