BAC Information

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BAC

Clone NameB6Ng01-043F24
Chromosome10 (Build37)
Map Location 12,512,403 - 12,647,842
singlet/doubletdoublet
Overlap geneUtrn, LOC665172
Upstream genenone
Downstream geneStx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043F24.bB6Ng01-043F24.g
ACCDH869460DH869461
length1,1931,151
definitionDH869460|Mus musculus domesticus DNA, BAC clone: B6Ng01-043F24, 5' end.DH869461|Mus musculus domesticus DNA, BAC clone: B6Ng01-043F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,512,403 - 12,513,617)(12,646,686 - 12,647,842)
sequence
gaattcaaggttttcccctcagcagacagttcaagaccagcctagactgc
ttgaagcgtcaacccccaccaccaaaaaaaaaagaaaaaaacaaacaaac
aaacaaacaaaaaaaatcttcaaaggttttaaaaagaatatattcaaact
actggtactgtgttaaaaaattttttttaggtaaggcaaaaagataaaac
aaaaaagacaaaatgaaaacaaaaacccttataaaaccatagaagtaata
cagtattataggtagtatttctgaaggcagtggatgtacttgcccagcac
acacaaagctctggggtctatctccagcaccaaacaggatgggtttgggg
acgcgggtgcgggtggtacaagcctgtaagcccaaaactctccaggaaga
aacaagacgataagaagttcaaggccttcccccaagtcaggagcaagcct
gagcttccagagatcaaatctaaaaagaaggtggagggagagggagaggc
aacatagacaccaactacatgggacattacaagccgtgctctaagtcacc
actgggtcctcgaacctctcagttgtgaaaggccaaactagaaattaaaa
aataaatcaagccgggcgtggtggtgcccgcctttaatcccagcacttgg
gaggcagaggcaggcggatttctgagtttgaggccagcctggtctacaga
gtgagttccaggacagccagggctatacagagaaaccctgtctcagaaaa
aaaaacaaaaacaaaagaaagaaagaaaaaagaaacaaacaaacaaacaa
acaaaacaaaaaaagtaaataaatcaaatacctaagacggcaaacccaga
gcgaccccttcaaatcaggcaagcagccctgggtcttctttggaccctgc
tcagtgattctttgcctgacacagaaatattttatcgttgggtaaatata
ctatttgtaggattaatgttgatgcttcttttcataaaacaccatgcaaa
gccttcctatgtcagaaaagagcatatacgggggccttttcattcttacc
cctcctcctggctttgccaacaaataagttatttcttgaaggaatatttt
ccttgaaaacagaagctgggaagattatccatggaacataaaagattaag
gtacctgaaatgggcatatacactgccaagattacctatctgt
gaattctttctctcgtgtgcaatctctagatttaaatctctctctctctt
ttgggagggcatgggggagtagaaaaagaatcattagagaagaagaagac
gtttaggggaggaaaacagaagaagaaaggacagtaaaatacatctaact
tgaaagagaaatgggaactattcgggcaaggatgagagccaggactggag
ggtcatgggtcacaacataaggtccattgggaaaagggatgagctgccac
acaaaatataatgacacttatatataaaaatgtcataatgaagttcactt
ggctttgagtgctaattttaacatcaattttaaaaataaatttaaagcaa
gaaactgagacaacagtgtgtgtgtctgtgatacacacacacaaagcagt
aacatagccatttatcatttttattaatgctgattgctgcaggtaaatat
gatggattggttattgtgccacaggccaaggcagagagggtctgttcaca
ctagcatcaccacaaaggcaggaatcacatattgcttggtagcagctgcc
ccgcctttggccatcagaaactctcagcctcattctcccttatgggacca
ttgtttcttatgctaccctgatggaaatactgtcctatggaacatgccta
catgaaatcaccttaattctcccttcctcttgtcccttgtccccagtaac
cttatatgtggcattgctaaaacacagcccttaattcaaagggaataagg
gaatttattctggagccaaatatgaatagccatagcctgggaacccagat
ttgcatttctttgaatatcatattccaatgtgttaagaatttgcgaagtt
ttttgtttgtttgtttaattaaagaataaaagaaagtcataagtcagaca
attttcaaagacattgataagaataacttgtaggttgttgcacagcatga
atctttatttgccttaatgatatttgatgattaaaaaatagatttatttt
atgtgcatcagtgttttgccacagatattttttttttgggaggtgtccaa
ttccctggaactgagttacaagatcggttgtggagcttgcttgcagtgcc
tgggatgaaccccactctctctggaagagagccggttaccactgacatct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12512403_12513617
seq2: B6Ng01-043F24.b_46_1238

seq1  GAATTCAAGGTTTTCCCCTCAGCAGACAGTTCAAGACCAGCCTAGACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTTTTCCCCTCAGCAGACAGTTCAAGACCAGCCTAGACTGC  50

seq1  TTGAAGCGTCAACCCCCACCACCAAAAAAAAAAGAAAAAAACAAACAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCGTCAACCCCCACCACCAAAAAAAAAAGAAAAAAACAAACAAAC  100

seq1  AAACAAACAAAAAAAATCTTCAAAGGTTTTAAAAAGAATATATTCAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAAAAAATCTTCAAAGGTTTTAAAAAGAATATATTCAAACT  150

seq1  ACTGGTACTGTGTTAAAAAATTTTTTTTAGGTAAGGCAAAAAGATAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTACTGTGTTAAAAAATTTTTTTTAGGTAAGGCAAAAAGATAAAAC  200

seq1  AAAAAAGACAAAATGAAAACAAAAACCCTTATAAAACCATAGAAGTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACAAAATGAAAACAAAAACCCTTATAAAACCATAGAAGTAATA  250

seq1  CAGTATTATAGGTAGTATTTCTGAAGGCAGTGGATGTACTTGCCCAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTATAGGTAGTATTTCTGAAGGCAGTGGATGTACTTGCCCAGCAC  300

seq1  ACACAAAGCTCTGGGGTCTATCTCCAGCACCAAACAGGATGGGTTTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGCTCTGGGGTCTATCTCCAGCACCAAACAGGATGGGTTTGGGG  350

seq1  ACGCGGGTGCGGGTGGTACAAGCCTGTAAGCCCAAAACTCTCCAGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGGGTGCGGGTGGTACAAGCCTGTAAGCCCAAAACTCTCCAGGAAGA  400

seq1  AACAAGACGATAAGAAGTTCAAGGCCTTCCCCCAAGTCAGGAGCAAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGACGATAAGAAGTTCAAGGCCTTCCCCCAAGTCAGGAGCAAGCCT  450

seq1  GAGCTTCCAGAGATCAAATCTAAAAAGAAGGTGGAGGGAGAGGGAGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCCAGAGATCAAATCTAAAAAGAAGGTGGAGGGAGAGGGAGAGGC  500

seq1  AACATAGACACCAACTACATGGGACATTACAAGCCGTGCTCTAAGTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGACACCAACTACATGGGACATTACAAGCCGTGCTCTAAGTCACC  550

seq1  ACTGGGTCCTCGAACCTCTCAGTTGTGAAAGGCCAAACTAGAAATTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCCTCGAACCTCTCAGTTGTGAAAGGCCAAACTAGAAATTAAAA  600

seq1  AATAAATCAAGCCGGGCGTGGTGGTGCCCGCCTTTAATCCCAGCACTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCAAGCCGGGCGTGGTGGTGCCCGCCTTTAATCCCAGCACTTGG  650

seq1  GAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGA  700

seq1  GTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAGAAAA  750

seq1  AAAAACAAAAAACAAAAGAAAGAAAGAAAAAAGAAACAAACAAACAAACA  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAC-AAAAACAAAAGAAAGAAAGAAAAAAGAAACAAACAAACAAACA  799

seq1  AACAAAAACAAAAAAAGTAAATAAATCAAATACCTAAGACGGCAAACCCA  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAC-AAAACAAAAAAAGTAAATAAATCAAATACCTAAGACGGCAAACCCA  848

seq1  GAGCGACCCCTTCAAAATCAGGCAAGCAGCCCTGGGTCTTCTTTGGGACC  900
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  GAGCGACCCCTTC-AAATCAGGCAAGCAGCCCTGGGTCTTCTTT-GGACC  896

seq1  CTGCTCAGTGATTCTTTGCCTGACACAGAAATAATTTTATCGTTGGTTAA  950
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CTGCTCAGTGATTCTTTGCCTGACACAGAAAT-ATTTTATCGTTGGGTAA  945

seq1  ATATACTATTTGTAGGAATTAATGTTGATGCTTCTTTTTCCATAAAACAC  1000
      |||||||||||||||| |||||||||||||||||||||  ||||||||||
seq2  ATATACTATTTGTAGG-ATTAATGTTGATGCTTCTTTT--CATAAAACAC  992

seq1  CATGCAAAGCCTTTCCTATGTCAAGAAAAGGAAGCATATTACGGGGGCCT  1050
      ||||||||||| |||||||||| |||||||  |||||| |||||||||||
seq2  CATGCAAAGCC-TTCCTATGTC-AGAAAAG--AGCATA-TACGGGGGCCT  1037

seq1  TTTCATTCTTACCTCTCCTCCTGGCTTTGGCCCAACAAATAAGTTATTTT  1100
      ||||||||||||| |||||||||||||||  ||||||||||||||| |||
seq2  TTTCATTCTTACCCCTCCTCCTGGCTTTG--CCAACAAATAAGTTA-TTT  1084

seq1  CTTGAAGGAAATATTTTCCTTGAAAAACAGAAGCTGGGAGGATTTATCCA  1150
      |||||||| ||||||||||||| |||||||||||||||| || |||||||
seq2  CTTGAAGG-AATATTTTCCTTG-AAAACAGAAGCTGGGAAGA-TTATCCA  1131

seq1  TTTGAACATAAAAGATTTAGGTACCTGAAATAGGGCATTATCACACTGCC  1200
       | |||||||||||||| ||||||||||||| ||||| ||| ||||||||
seq2  -TGGAACATAAAAGATTAAGGTACCTGAAAT-GGGCA-TAT-ACACTGCC  1177

seq1  AGGA-TACCTATCTGT  1215
      | || |||||||||||
seq2  AAGATTACCTATCTGT  1193

seq1: chr10_12646686_12647842
seq2: B6Ng01-043F24.g_67_1217 (reverse)

seq1  AAGATGGCTCAGTGGT-ACCGGCTGCTCTTCCAGAG-GATGTGGGTTCAA  48
      ||||||  |||||||| ||||||| ||||||||||| ||   ||||||| 
seq2  AAGATG--TCAGTGGTAACCGGCT-CTCTTCCAGAGAGAGTGGGGTTCA-  46

seq1  TTCCCAGCACCTGCATAGC-AGCT-CACAA-CGATC-TGTAACTCCAGTT  94
       ||||||   ||||| ||| |||| ||||| ||||| ||||||| |||||
seq2  -TCCCAGGCACTGCA-AGCAAGCTCCACAACCGATCTTGTAACT-CAGTT  93

seq1  CCAGGGAATTTGACACTTCC--ACATAAATATATCTGTGGGCAAAACACT  142
      |||||||||| ||||| |||  | | ||| |||||||| |||||||||||
seq2  CCAGGGAATTGGACACCTCCCAAAAAAAAAATATCTGT-GGCAAAACACT  142

seq1  GATGCACATAAAATAAATCTATTTTTTTTAATCATCAAATATCATTTAAG  192
      |||||||||||||||||||||  ||||||||||||||||||||| |||||
seq2  GATGCACATAAAATAAATCTA--TTTTTTAATCATCAAATATCA-TTAAG  189

seq1  GCAAATAAAGATTCCATGCTTGTGGCAACAACCTACAAGTTATTCTTATC  242
      ||||||||||||| ||||| ||| ||||||||||||||||||||||||||
seq2  GCAAATAAAGATT-CATGC-TGT-GCAACAACCTACAAGTTATTCTTATC  236

seq1  AATGTCTTTGAAAATTGTCTGACTTATGACTTTCTTTTATTCTTTAATTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTTGAAAATTGTCTGACTTATGACTTTCTTTTATTCTTTAATTA  286

seq1  AACAAACAAACAAAAAACTTCGCAAATTCTTAACACATTGGAATATGATA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAAACTTCGCAAATTCTTAACACATTGGAATATGATA  336

seq1  TTCAAAGAAATGCAAATCTGGGTTCCCAGGCTATGGCTATTCATATTTGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAAATGCAAATCTGGGTTCCCAGGCTATGGCTATTCATATTTGG  386

seq1  CTCCAGAATAAATTCCCTTATTCCCTTTGAATTAAGGGCTGTGTTTTAGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAATAAATTCCCTTATTCCCTTTGAATTAAGGGCTGTGTTTTAGC  436

seq1  AATGCCACATATAAGGTTACTGGGGACAAGGGACAAGAGGAAGGGAGAAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACATATAAGGTTACTGGGGACAAGGGACAAGAGGAAGGGAGAAT  486

seq1  TAAGGTGATTTCATGTAGGCATGTTCCATAGGACAGTATTTCCATCAGGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGATTTCATGTAGGCATGTTCCATAGGACAGTATTTCCATCAGGG  536

seq1  TAGCATAAGAAACAATGGTCCCATAAGGGAGAATGAGGCTGAGAGTTTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAAGAAACAATGGTCCCATAAGGGAGAATGAGGCTGAGAGTTTCT  586

seq1  GATGGCCAAAGGCGGGGCAGCTGCTACCAAGCAATATGTGATTCCTGCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCAAAGGCGGGGCAGCTGCTACCAAGCAATATGTGATTCCTGCCT  636

seq1  TTGTGGTGATGCTAGTGTGAACAGACCCTCTCTGCCTTGGCCTGTGGCAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGATGCTAGTGTGAACAGACCCTCTCTGCCTTGGCCTGTGGCAC  686

seq1  AATAACCAATCCATCATATTTACCTGCAGCAATCAGCATTAATAAAAATG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCAATCCATCATATTTACCTGCAGCAATCAGCATTAATAAAAATG  736

seq1  ATAAATGGCTATGTTACTGCTTTGTGTGTGTGTATCACAGACACACACAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGCTATGTTACTGCTTTGTGTGTGTGTATCACAGACACACACAC  786

seq1  TGTTGTCTCAGTTTCTTGCTTTAAATTTATTTTTAAAATTGATGTTAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTCAGTTTCTTGCTTTAAATTTATTTTTAAAATTGATGTTAAAA  836

seq1  TTAGCACTCAAAGCCAAGTGAACTTCATTATGACATTTTTATATATAAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTCAAAGCCAAGTGAACTTCATTATGACATTTTTATATATAAGT  886

seq1  GTCATTATATTTTGTGTGGCAGCTCATCCCTTTTCCCAATGGACCTTATG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTATATTTTGTGTGGCAGCTCATCCCTTTTCCCAATGGACCTTATG  936

seq1  TTGTGACCCATGACCCTCCAGTCCTGGCTCTCATCCTTGCCCGAATAGTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCCATGACCCTCCAGTCCTGGCTCTCATCCTTGCCCGAATAGTT  986

seq1  CCCATTTCTCTTTCAAGTTAGATGTATTTTACTGTCCTTTCTTCTTCTGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCTCTTTCAAGTTAGATGTATTTTACTGTCCTTTCTTCTTCTGT  1036

seq1  TTTCCTCCCCTAAACGTCTTCTTCTTCTCTAATGATTCTTTTTCTACTCC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCCCTAAACGTCTTCTTCTTCTCTAATGATTCTTTTTCTACTCC  1086

seq1  CCCATGCCCTCCCAAAAGAGAGAGAGAGATTTAAATCTAGAGATTGCACA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCCCTCCCAAAAGAGAGAGAGAGATTTAAATCTAGAGATTGCACA  1136

seq1  CGAGAGAAAGAATTC  1157
      |||||||||||||||
seq2  CGAGAGAAAGAATTC  1151