BAC Information

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BAC

Clone NameB6Ng01-043I14
Chromosome13 (Build37)10 (Build37)
Map Location 23,391,757 - 23,392,9409,617,322 - 9,617,558
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneV1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541
Downstream geneZfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043I14.bB6Ng01-043I14.g
ACCDH869569DH869570
length1,169897
definitionDH869569|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I14, 5' end.DH869570|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,391,757 - 23,392,940)(9,617,322 - 9,617,558)
sequence
gaattcctacttttctccctcccaagagctctctccgccctgcgcgccac
ccaagtcacattaatccttctctgtagcaggattccgcctctccactatg
atttttatctttgctttagttgcattccttgcgtttgtctccgttggtgc
ggatctgtaacttctgaatcacacttgggcaaggatacagtgcacatctt
ggaaggcaaagtgaaataagcaagcttgctgtgtgtttccgtagtgtagt
ggtcatcacgctcgcctcacacgcgagaggtccccggttcgaaaccgggc
gggaacaacacttgtcagtttctttttgtttgtttttgttttttgttttt
ctgaactcttcagattttcaacagagcaaacacccatctaaaaggaaccg
catgcactgtaggatgcttccctctgggtcccagattagacatagatcac
acccaaacaccaattttcaagcaaaagagagatccattattaagcaaggc
aaaaaaaaccgaggtctgtgttagaatgaactaggactttttggtaaatt
ctgattggatatttttaatcagttagttcaaaaaaataaattttgacctt
gatgctttgatagttggaccttggtgttccggcacaagaacgaatcagca
cataaaggactagatcttgggggttagctttggaaatgtaatctaacgtt
ttatcaagggggagacaaaaagcaaaggacaaaaggcaaaagctgttggc
accatgttgtcatgccccggcctgctagatcttttcaccatgtctcttga
ctagacctgcaggagcacattccccatgctctttctaggaaaaacaaaaa
caaacaaacaaacaacccaaaggaaggcacaccggtccactgccaccagg
aattgttggctctccacatttttccatgtccacttcaactcgtcactttt
ttgtagaacagtagttctcagccttcctaatatctatctagttagggtct
tactgctgtgacagacaccacgaccaaagcaccacttataaatgacacat
ttatcgaggctagctacttctaatagtgccactccctggccatacaagcc
atcccactaatgtgcaacttttatacagttcctctaggctgtgctgaacc
cacaacacaatatattcat
gaattcaacccaattcccttttgttcttctatcagattctaggtatctgg
tcttgtgttgacatcctttgtccactgggagttgcattttgtgcaagatg
atagatgtagactatttttattcttgtatatgcagctttcgagtttgacc
agcaccatttgttggagatgctgtcttttctccattttgtgttttttgat
tctttgtcaacaatctgttgtccataggtgtgtgaatttacaagcaatct
gcagtttgactctattgatctggtttgtgtggacaccatgctgtgtttat
taccatggctctataatacaagttgaaatctggggcagtgatacttttag
tgcttaatttatgactcaggattgttttagctatcctcagtgttttaatt
tccatatgaactgataattgtattttttccaatttctatgaagaattgtg
ttggaattttggtggagattacattgaatctgtaaattgcttttgataaa
gatgtccattttcacaattgagttctaccaatccatgagcatgggaggtc
cttccatcttctagtgtcctcttcagtttctttcttcggtgtcttcacgt
ttttatttacacatctttcacttgttttgttaggagttatcccaggatag
attttaagaaattgttaaaagtactgtgaccctggcttctttctcttttt
gccatttgtatgtagaaggactactgtttttttaatgtgttaattttata
ttctgctattttgctgaaagagtttatcagctatagaagtttcctggtga
agtctttaggaacttttaggtataacatgtcatcaacaaataaaaagact
ttgacttcttctttctttctttctttctttctttcttcttctttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23391757_23392940
seq2: B6Ng01-043I14.b_44_1212

seq1  GAATTCCTACTTTTCTCCCTCCCAAGAGCTCTCTCCGCCCTGCGCGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTTTTCTCCCTCCCAAGAGCTCTCTCCGCCCTGCGCGCCAC  50

seq1  CCAAGTCACATTAATCCTTCTCTGTAGCAGGATTCCGCCTCTCCACTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCACATTAATCCTTCTCTGTAGCAGGATTCCGCCTCTCCACTATG  100

seq1  ATTTTTATCTTTGCTTTAGTTGCATTCCTTGCGTTTGTCTCCGTTGGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATCTTTGCTTTAGTTGCATTCCTTGCGTTTGTCTCCGTTGGTGC  150

seq1  GGATCTGTAACTTCTGAATCACACTTGGGCAAGGATACAGTGCACATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGTAACTTCTGAATCACACTTGGGCAAGGATACAGTGCACATCTT  200

seq1  GGAAGGCAAAGTGAAATAAGCAAGCTTGCTGTGTGTTTCCGTAGTGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAAAGTGAAATAAGCAAGCTTGCTGTGTGTTTCCGTAGTGTAGT  250

seq1  GGTCATCACGCTCGCCTCACACGCGAGAGGTCCCCGGTTCGAAACCGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCACGCTCGCCTCACACGCGAGAGGTCCCCGGTTCGAAACCGGGC  300

seq1  GGGAACAACACTTGTCAGTTTCTTTTTGTTTGTTTTTGTTTTTTGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAACACTTGTCAGTTTCTTTTTGTTTGTTTTTGTTTTTTGTTTTT  350

seq1  CTGAACTCTTCAGATTTTCAACAGAGCAAACACCCATCTAAAAGGAACCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCTTCAGATTTTCAACAGAGCAAACACCCATCTAAAAGGAACCG  400

seq1  CATGCACTGTAGGATGCTTCCCTCTGGGTCCCAGATTAGACATAGATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACTGTAGGATGCTTCCCTCTGGGTCCCAGATTAGACATAGATCAC  450

seq1  ACCCAAACACCAATTTTCAAGCAAAAGAGAGATCCATTATTAAGCAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACACCAATTTTCAAGCAAAAGAGAGATCCATTATTAAGCAAGGC  500

seq1  AAAAAAAACCGAGGTCTGTGTTAGAATGAACTAGGACTTTTTGGTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCGAGGTCTGTGTTAGAATGAACTAGGACTTTTTGGTAAATT  550

seq1  CTGATTGGATATTTTTAATCAGTTAGTTCAAAAAAATAAATTTTGACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGATATTTTTAATCAGTTAGTTCAAAAAAATAAATTTTGACCTT  600

seq1  GATGCTTTGATAGTTGGACCTTGGTGTTCCGGCACAAGAACGAATCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTGATAGTTGGACCTTGGTGTTCCGGCACAAGAACGAATCAGCA  650

seq1  CATAAAGGACTAGATCTTGGGGGTTAGCTTTGGAAATGTAATCTAACGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGGACTAGATCTTGGGGGTTAGCTTTGGAAATGTAATCTAACGTT  700

seq1  TTATCAAGGGGGAGACAAAAAGCAAAGGACAAAAGGCAAAAGCTGTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGGGGGAGACAAAAAGCAAAGGACAAAAGGCAAAAGCTGTTGGC  750

seq1  ACCATGTTTGTCATGCCCCGGCCTGCTAGATCTTTTCACCATGTCTCTTG  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATG-TTGTCATGCCCCGGCCTGCTAGATCTTTTCACCATGTCTCTTG  799

seq1  ACTAGACCTGCAGGAGCACATTCCCCATGCTCTTTCTAGGAAAAACAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACCTGCAGGAGCACATTCCCCATGCTCTTTCTAGGAAAAACAAAA  849

seq1  ACAAACAAACAAACAACCCAAAGGAAGGCACACCGGTCCACTGCCACCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAACCCAAAGGAAGGCACACCGGTCCACTGCCACCAG  899

seq1  GAATTTGTTGGCTCTCCACATTTTTCCATGTCCACTTCAACTCGTCACTT  950
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAA-TTGTTGGCTCTCCACATTTTTCCATGTCCACTTCAACTCGTCAC-T  947

seq1  TTTTTGTAGAACAGTAGTTCTCAGCCTTCCTAATTATCTATCTTAGTTAG  1000
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  TTTTTGTAGAACAGTAGTTCTCAGCCTTCCTAA-TATCTATC-TAGTTAG  995

seq1  GGTCTTACTGCTGTGAACAGACACCACGACCAAAGCAACACTTATAAATG  1050
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  GGTCTTACTGCTGTG-ACAGACACCACGACCAAAGCACCACTTATAAATG  1044

seq1  ACAACATTTAATCGAGGCTAGCTTACTTCTAATAGTGCCACTCCCTGGGC  1100
      || |||||| |||||||||||| ||||||||||||||||||||||| |||
seq2  AC-ACATTT-ATCGAGGCTAGC-TACTTCTAATAGTGCCACTCCCT-GGC  1090

seq1  CATACAAGCCATCACACTAATGTTGCAACCTTTTAATACAGTTCCTC-AT  1149
      ||||||||||||| |||||||| ||||||  ||| |||||||||||| | 
seq2  CATACAAGCCATCCCACTAATG-TGCAAC--TTTTATACAGTTCCTCTAG  1137

seq1  GCTGTGCTG-ACCCACAACCACAAATTTATATTCAT  1184
      ||||||||| |||||||| |||||   |||||||||
seq2  GCTGTGCTGAACCCACAA-CACAA---TATATTCAT  1169

seq1: chr10_9617322_9617558
seq2: B6Ng01-043I14.g_907_963 (reverse)

seq1  AAGAAAGAAGAAGAAAGAAAGAAAAACAAAACTTTGAAAGAA-AAGT-AA  48
      |||||||||||||||||||||||| | | ||    ||||||| |||| ||
seq2  AAGAAAGAAGAAGAAAGAAAGAAAGAAAGAA---AGAAAGAAGAAGTCAA  47

seq1  AATAATCTTAAAATAACTGATTAATTTTTCCTTCAGCCACATAATAGAAT  98
      | |  | |||                                        
seq2  AGTCTTTTTA----------------------------------------  57

seq1  GATTTTGCTGGAGGGAAAAATCTTTCAGTTCCAAACAGTGCTTCCAGGAC  148
                                                        
seq2  --------------------------------------------------  57

seq1  AATGCCAAGTGACTCTGACACCGAACTTCACTGAACAATGAGAAAATTAA  198
                                                        
seq2  --------------------------------------------------  57

seq1  CTATCCATATGTACAAAACTAAAATAGAAAGTCTTTTTA  237
                                             
seq2  ---------------------------------------  57