BAC Information

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BAC

Clone NameB6Ng01-043J23
Chromosome14 (Build37)10 (Build37)
Map Location 78,162,682 - 78,163,65524,529,657 - 24,530,439
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678
Downstream geneGm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180, Akap11, Dgkh, LOC673649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043J23.bB6Ng01-043J23.g
ACCDH869629DH869630
length9701,023
definitionDH869629|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J23, 5' end.DH869630|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,162,682 - 78,163,655)(24,529,657 - 24,530,439)
sequence
gaattcattaggaactgaaaaattaaaagacctcaaacgctaaaaaaaaa
aaaaaaaaagtttaaatccatatagacacagaaaagactgcaaatagaca
aagctaaaggaatagatcaatgctggtggaatcagaacacctgacttcaa
agcatcttacatagccctggtaacaaataagtaacaacgctgtaagggga
caaatgtacagaaccggtagttctcaaaaggaaaaatatgcatggccaaa
agatatctatgtatatatgtatatgcatacatacacacatacacacacac
atatgcatacatacacacacacacacatatatatacacacatgcatatgc
atatacatatatgttatgcatatacatatatgttcagtatacttagctat
cagggaaatacaaatcaaaactaaattaagattctctctcactccaatta
aaagggctatcatcagaaaatcaaacaacaacaaatactagtaaacctgt
ttggaagtttctcaaaaacaaacaaacaaacaaataaataaataaataaa
tagcagaaatatcatatgatccactattcttgtgtatatagctaaaaaaa
aagacagtcagcatataataatatacagagccatgttcactacacagcca
tgttgtagaatcaacccaaatgcccaatcaatgaatacagataatgtggc
atattgatacatcagagttttattcagctgttaagagcaaaacgttaata
tttagataaggaaatggatgtaaccagagatcaatatattaagcaaaata
agccaggcttgggaaacataaatgctatgtgctcataaacaccaccacga
aaaggtgaagccagatccagaacactcaagaagccaggtcatgtttagaa
cctcaaaagtttacaggagtatctttcagtgataggctgtctctaggact
ggatggtcgggggggggggg
gaattccttaccaataccctaagaagggagagcacagaatcctggagctg
gaaacatggctgacgtgggcagtcacacagtgtcctggtgaaccatgtga
acattatctccccttgcaactacaaatagtgcgacagtgtcagagggcag
catttgttagttctgtgcctcagttaaacctgctactcatgctctaagta
caaggagtacagccaaagattggggggggggggagtttaccaggtggcgc
ttttttttttccgccgtttttgcagttgtacacttcaaatgctttttcag
cctcggaggagagttgactggtgacttctgttatgctcaatattttaaat
gtaggaactgcagctgagagccaaattctgggtagaaattgttactgtaa
ctatcagacacataaagcgaggaaccaagagaaagcactgccagtagtgt
gtatttcagggtatttttatcttaaaggtcagcaagttggggctcctcag
ccaactctgcctttaatgcatttgactccatatatgctaagaactggatt
gtttttaacgatttaaaagagaagaagaaaaatcttgtggcatgtaaaaa
gttgaattttgatgtctaccggtaacatttattgtatctcagtgagtttt
ccttgtgtatggattgggctcacctgtggtgcattcccgaaaagaataga
atttgagttgctacagcagaaaccacatggccttgcaaagtttaaacatc
gatgcctcctgactcttcccagaaaaaaaaaaaaaaaagcccatttgact
cccagaatggacaaagtttcagggtcagaatttccaccctctttccatgt
ctaccccttttttagtttctggaaaacatgctggtatttagttatccaca
ataaactcctgcttatgtcttactctattgccttacagaaaacatgtgaa
tccatcttaatattatgaagagcttagtgatcccaccaaaacccttctcg
atcaattataccattgtacggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78162682_78163655
seq2: B6Ng01-043J23.b_45_1014

seq1  GAATTCATTAGGAACTGAAAAATTAAAAGACCTCAAACGCTAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGAACTGAAAAATTAAAAGACCTCAAACGCTAAAAAAAAA  50

seq1  AAAAAAAAAGTTTAAATCCATATAGACACAGAAAAGACTGCAAATAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTTTAAATCCATATAGACACAGAAAAGACTGCAAATAGACA  100

seq1  AAGCTAAAGGAATAGATCAATGCTGGTGGAATCAGAACACCTGACTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAGGAATAGATCAATGCTGGTGGAATCAGAACACCTGACTTCAA  150

seq1  AGCATCTTACATAGCCCTGGTAACAAATAAGTAACAACGCTGTAAGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTACATAGCCCTGGTAACAAATAAGTAACAACGCTGTAAGGGGA  200

seq1  CAAATGTACAGAACCGGTAGTTCTCAAAAGGAAAAATATGCATGGCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTACAGAACCGGTAGTTCTCAAAAGGAAAAATATGCATGGCCAAA  250

seq1  AGATATCTATGTATATATGTATATGCATACATACACACATACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCTATGTATATATGTATATGCATACATACACACATACACACACAC  300

seq1  ATATGCATACATACACACACACACACATATATATACACACATGCATATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATACATACACACACACACACATATATATACACACATGCATATGC  350

seq1  ATATACATATATGTTATGCATATACATATATGTTCAGTATACTTAGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATATGTTATGCATATACATATATGTTCAGTATACTTAGCTAT  400

seq1  CAGGGAAATACAAATCAAAACTAAATTAAGATTCTCTCTCACTCCAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAATACAAATCAAAACTAAATTAAGATTCTCTCTCACTCCAATTA  450

seq1  AAAGGGCTATCATCAGAAAATCAAACAACAACAAATACTAGTAAACCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTATCATCAGAAAATCAAACAACAACAAATACTAGTAAACCTGT  500

seq1  TTGGAAGTTTCTCAAAAACAAACAAACAAACAAATAAATAAATAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTTTCTCAAAAACAAACAAACAAACAAATAAATAAATAAATAAA  550

seq1  TAGCAGAAATATCATATGATCCACTATTCTTGTGTATATAGCTAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAATATCATATGATCCACTATTCTTGTGTATATAGCTAAAAAAA  600

seq1  AAGACAGTCAGCATATAATAATATACAGAGCCATGTTCACTACACAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTCAGCATATAATAATATACAGAGCCATGTTCACTACACAGCCA  650

seq1  TGTTGTAGAATCAACCCAAATGCCCAATCAATGAATACAGATAATGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGAATCAACCCAAATGCCCAATCAATGAATACAGATAATGTGGC  700

seq1  ATATTGATACATCAGAGTTTTATTCAGCTGTTAAGAGCAAAACGTTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATACATCAGAGTTTTATTCAGCTGTTAAGAGCAAAACGTTAATA  750

seq1  TTTAGATAAGGAAATGGATGTAACCAGAGATCAATATATTAAGCAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATAAGGAAATGGATGTAACCAGAGATCAATATATTAAGCAAAATA  800

seq1  AGCCAGGCTT-GGAAACATAAATGCTATGTGCTCATAAACACCACCACGA  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCTTGGGAAACATAAATGCTATGTGCTCATAAACACCACCACGA  850

seq1  AAAGGTGAAGCCAGATCCAGAACACTCAAGAAGCCAGGTCATGTTTAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGAAGCCAGATCCAGAACACTCAAGAAGCCAGGTCATGTTTAGAA  900

seq1  CCTCAAAAGTTTACAGGAGTATCTTTCAGTGATAGGCTTGTCTTCTAGGA  949
      ||||||||||||||||||||||||||||||||||||| |||| |||||| 
seq2  CCTCAAAAGTTTACAGGAGTATCTTTCAGTGATAGGC-TGTC-TCTAGG-  947

seq1  ACTGGGAATGGTCGGGGGGGGGGGG  974
      |||||  ||||||||||||||||||
seq2  ACTGG--ATGGTCGGGGGGGGGGGG  970

seq1: chr10_24529657_24530439
seq2: B6Ng01-043J23.g_302_1089 (reverse)

seq1  TACCGTGACAATGGTATAA-TGATTTGGGAAGGTTTTGGTGGGAT-ACAT  48
      |||||| |||||||||||| ||||   | | |||||||||||||| ||  
seq2  TACCGT-ACAATGGTATAATTGATCGAGAAGGGTTTTGGTGGGATCACTA  49

seq1  AGCTC-TCAT-ATATTTAGAATGGATTCCACATG-TTTCTGTAAGGCAAT  95
      ||||| |||| ||||| || ||||||| |||||| |||||||||||||||
seq2  AGCTCTTCATAATATTAAG-ATGGATT-CACATGTTTTCTGTAAGGCAAT  97

seq1  AGAGTAAGACATTAGGCAGGTGTTTATTGTGGATAACTAAATACCAGCAT  145
      ||||||||||| || ||||| |||||||||||||||||||||||||||||
seq2  AGAGTAAGACA-TAAGCAGGAGTTTATTGTGGATAACTAAATACCAGCAT  146

seq1  GTTTTCCAGAAACTAAAAAAGGGGTTAGACATGGAAAGAGGGTGG-AATT  194
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  GTTTTCCAGAAACTAAAAAAGGGG-TAGACATGGAAAGAGGGTGGAAATT  195

seq1  CTGACCCTGAAACTTTGTCCATTTCTGGGAGTCAAATGGGC-TTTTTTTT  243
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  CTGACCCTGAAACTTTGTCCA-TTCTGGGAGTCAAATGGGCTTTTTTTTT  244

seq1  TTTTTTTCTGGGAAGAGTCAGGAGGCATCGATG-TTAAACTTTGCAAGGC  292
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTTTTCTGGGAAGAGTCAGGAGGCATCGATGTTTAAACTTTGCAAGGC  294

seq1  CATGTGGTTTCTGCTGTAGCAACTCAAATTCTATTCTTTTCGGGAATGCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTTCTGCTGTAGCAACTCAAATTCTATTCTTTTCGGGAATGCA  344

seq1  CCACAGGTGAG-CCAATCCATACACAAGG-AAACTCACTGAGATACAATA  390
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  CCACAGGTGAGCCCAATCCATACACAAGGAAAACTCACTGAGATACAATA  394

seq1  AATGTTACCGGTAGACATCAAAATTCAAC-TTTTACATGCCACAAGATTT  439
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATGTTACCGGTAGACATCAAAATTCAACTTTTTACATGCCACAAGATTT  444

seq1  TTCTTCTTCTCTTTTAAATCGTTAAAAACAATCCAGTTCTTAGCATATAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTCTTTTAAATCGTTAAAAACAATCCAGTTCTTAGCATATAT  494

seq1  GGAGTCAAATGCATTAAAGGCAGAGTTGGCTGAGGAGCCCCAACTTGCTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAATGCATTAAAGGCAGAGTTGGCTGAGGAGCCCCAACTTGCTG  544

seq1  ACCTTTAAGATAAAAATACCCTGAAATACACACTACTGGCAGTGCTTTCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAAGATAAAAATACCCTGAAATACACACTACTGGCAGTGCTTTCT  594

seq1  CTTGGTTCCTCGCTTTATGTGTCTGATAGTTACAGTAACAATTTCTACCC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCCTCGCTTTATGTGTCTGATAGTTACAGTAACAATTTCTACCC  644

seq1  AGAATTTGGCTCTCAGCTGCAGTTCCTACATTTAAAATATTGAGCATAAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGGCTCTCAGCTGCAGTTCCTACATTTAAAATATTGAGCATAAC  694

seq1  AGAAGTCACCAGTCAACTCTCCTCCGAGGCTGAAAAAGCATTTGAAGTGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCACCAGTCAACTCTCCTCCGAGGCTGAAAAAGCATTTGAAGTGT  744

seq1  ACAACTGCAAAAACGGCGGAAAAAAAAAAGCGCCACCTGGTAAA  783
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCAAAAACGGCGGAAAAAAAAAAGCGCCACCTGGTAAA  788