BAC Information

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BAC

Clone NameB6Ng01-044E06
Chromosome10 (Build37)
Map Location 43,614,480 - 43,751,392
singlet/doubletdoublet
Overlap geneQrsl1, Rtn4ip1, Aim1
Upstream geneScml4, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192
Downstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044E06.bB6Ng01-044E06.g
ACCDH870072DH870073
length1,151897
definitionDH870072|Mus musculus domesticus DNA, BAC clone: B6Ng01-044E06, 5' end.DH870073|Mus musculus domesticus DNA, BAC clone: B6Ng01-044E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,749,883 - 43,751,392)(43,614,480 - 43,615,375)
sequence
gaattcaggaccttcggaagagcagtgagtgctcttagtctctgactcat
ctctccagcctgagtattttatattaagagaaatttggatgctactgttg
agtgaaagttaaatttattaggactctgacaatctaaatcctgaagagaa
tagttaaaaaagctggccagcctcagacgatgccctgtggaatctgatgg
gactctggcagcatccttgacagtctctgtgtctgcagaccccatgttga
tctccgatgatatagttctcaactccaactcatcctcagagaggaccaga
ggtagagcctggctctctcctgctcctgtaggttcttctgcagatctggc
ctcctcctcccctctgtcttttgtggatctacccactagttccatttaga
tggtccattgtgcttcctattggcaccagacacagagatcctggaaggag
atcaaagagaaggaaggaagtgaggcttagaccttctttcttctagatcc
tctccagtaggcaggcattgcaggccgcctgtgtctctcagtccctgcca
gcatctcctcctcacatctgtctgtgggtccctgtctcaggagcaactcc
ctccttgcccgtcggggctgttctagtcttggatcaggacactgctctta
gggcctctgtgcccaccattgcccccatctccatttctgtcttttctttc
ttgcagggcttctctaatgctcattctctttgtatgtgctttgctaagca
agccagacttgaggatttttcactgtaaacaatgccgtgaaatgaatgca
tccgttctgtaactttctggagcgctcactgggtatttgggactcctgtt
gcaagactgtgaggctctgagaacacagagtgaagggagacggtaacatc
catgctctcaggacaggatgctccagggggaaatgaaagtaaagatacac
acattttaatctagtgagctagagacaggaaattggatgaataatgtacc
agagaaagggggtagagatgactatgagaatatttttcctaccagtggtg
gagtcacagaagctcttctaagtgacaggtaaaaaatatgtgtagtctga
aagggcagtctgggaaaacttgcgtgtggagaaacagtcttgaaagggac
c
gaattcaacagttactattagagggtaagctattcctaatttaaatagca
ggtccacctctacctctaccaccaccaccaccaccaccccctatagattg
aaataaacaaaaacccctcgagcctatattctaaaacacactgtggtagc
cgggtggtggtgacgcacgcctttaattccagcacctgggaggcagaagc
aggggtatttctgagttcgaggccagcctggtctacagagtaagttccag
cagccagggctacacagagaaaccctgtctcgaaaaaacaaccacaacaa
aaaaatataaaacacaccgtggttcatctaagttttggtgggcagcattc
tgagtaccttttcttgctccacttatttttccttttaagatctaaatatt
ttggtaaccatttttgttttcagcctggtaagttaaagaataaaactaag
ggttaccacacagttctaagagatggcgagcaggtgctgatgggctctca
gtgtcctcaggcggaataatgcctgccaggaccaagccctcctgacaagg
ctcctacactttgcaagcagtactcactgatgtggctggccatcgcctac
agagtctgtatgtaatgagcaagcactgaagaggcagtagtcttttctca
gtgcttcccacaaggttgtaattaagctctggttatcttaaagcatctgt
attttatctttaagtgtcaaaaccacccatctttatatcaatgttgtaat
cagactttaccttttacatatttgatgcacatgttgtctcaatgccagtt
gtgctaaagttgtctttcacagcaacaggaattccatctaaatctccaag
agactgacctgcatttaaaagccaaaggggggttggggggaggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_43749883_43751392
seq2: B6Ng01-044E06.b_44_1194 (reverse)

seq1  GGTCCCTTTCATCTTGTCCCTTCTGTCAGGGCCTCCTTGCTTAGCCCATC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTTCTATCCTCACTCTCATCTCCATTGTAATGTCAGCTTTATGGAGCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTGGATATCCTTGGGGTTTCTTGACAGTACAGTTCCATGCTGCAGTATTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCAGTCCTCTTTAAGCATTCAATAACCTGGGGCTACAGGACTCTTATG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAGCCACCCAGGAAGAGGAAAGGTTAGGTGTACTTGAGCAACCCTTTCTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCGTGACACGGATGGTTCTGAGAAGTGGCCAACATGGCTGCCACAATC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTCACCCATTGTCCTATGATCTCTCAGCACTAGCTAGTCCTTGCTTCA  350
                                                        
seq2  --------------------------------------------------  0

seq1  GTCAGAGTCCCTT--CAGACTG-TTCTACACACGC-AGTTTTTCCAGACT  396
            |||||||   |||||| |||| ||||||| |||||| |||||||
seq2  -----GGTCCCTTTCAAGACTGTTTCTCCACACGCAAGTTTTCCCAGACT  45

seq1  GCCCTTTCCAGACTACCACATATTTTTTACCTGTCACCTTAGAGAAGCCT  446
      ||||||| ||||||| |||||||||||||||||||| ||||||  || ||
seq2  GCCCTTT-CAGACTA-CACATATTTTTTACCTGTCA-CTTAGAAGAG-CT  91

seq1  CCTGTGACTCCACCACCTGTTAGGATAATACTTCCTCATAGTCATCTCTA  496
       |||||||||||||| ||| ||||| || |  | ||||||||||||||||
seq2  TCTGTGACTCCACCA-CTGGTAGGA-AAAATATTCTCATAGTCATCTCTA  139

seq1  CCCCCTTTCTCTGGTACATTATTCATCCAATTTCCTGTCTCTAGCTCACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTCTCTGGTACATTATTCATCCAATTTCCTGTCTCTAGCTCACT  189

seq1  AGATTAAAATGTGTGTATCTTTACTTTCATTTCCCCCCTGGAGCATCCTG  596
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGATTAAAATGTGTGTATCTTTACTTTCATTT-CCCCCTGGAGCATCCTG  238

seq1  TCCTGAGAGCATGGATGTTACCGTCTCCCTTCACTCTGTGTTCTCAGAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAGCATGGATGTTACCGTCTCCCTTCACTCTGTGTTCTCAGAGC  288

seq1  CTCACAGTCTTGCAACAGGAGTCCCAAATACCCAGTGAGCGCTCCAGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTCTTGCAACAGGAGTCCCAAATACCCAGTGAGCGCTCCAGAAA  338

seq1  GTTACAGAACGGATGCATTCATTTCACGGCATTGTTTTACAGTGAAAAAT  746
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTACAGAACGGATGCATTCATTTCACGGCATTG-TTTACAGTGAAAAAT  387

seq1  CCTCAAGTCTGGCTTGCTTAGCAAAGCACATACAAAGAGAATGAGCATTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGTCTGGCTTGCTTAGCAAAGCACATACAAAGAGAATGAGCATTA  437

seq1  GAGAAGCCCTGCAAGAAAGAAAAGACAGAAATGGAGATGGGGGCAATGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCCCTGCAAGAAAGAAAAGACAGAAATGGAGATGGGGGCAATGGT  487

seq1  GGGCACAGAGGCCCTAAGAGCAGTGTCCTGATCCAAGACTAGAACAGCCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGAGGCCCTAAGAGCAGTGTCCTGATCCAAGACTAGAACAGCCC  537

seq1  CGACGGGCAAGGAGGGAGTTGCTCCTGAGACAGGGACCCACAGACAGATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGGGCAAGGAGGGAGTTGCTCCTGAGACAGGGACCCACAGACAGATG  587

seq1  TGAGGAGGAGATGCTGGCAGGGACTGAGAGACACAGGCGGCCTGCAATGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGAGATGCTGGCAGGGACTGAGAGACACAGGCGGCCTGCAATGC  637

seq1  CTGCCTACTGGAGAGGATCTAGAAGAAAGAAGGTCTAAGCCTCACTTCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTACTGGAGAGGATCTAGAAGAAAGAAGGTCTAAGCCTCACTTCCT  687

seq1  TCCTTCTCTTTGATCTCCTTCCAGGATCTCTGTGTCTGGTGCCAATAGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTTTGATCTCCTTCCAGGATCTCTGTGTCTGGTGCCAATAGGA  737

seq1  AGCACAATGGACCATCTAAATGGAACTAGTGGGTAGATCCACAAAAGACA  1146
      ||||||||||||||||||||||||                   |||||||
seq2  AGCACAATGGACCATCTAAATGGANNNNNNNNNNNNNNNNNNNAAAGACA  787

seq1  GAGGGGAGGAGGAGGCCAGATCTGCAGAAGAACCTACAGGAGCAGGAGAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGGAGGAGGCCAGATCTGCAGAAGAACCTACAGGAGCAGGAGAG  837

seq1  AGCCAGGCTCTACCTCTGGTCCTCTCTGAGGATGAGTTGGAGTTGAGAAC  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCTCTACCTCTGGTCCTCTCTGAGGATGAGTTGGAGTTGAGAAC  887

seq1  TATATCATCGGAGATCAACATGGGGTCTGCAGACACAGAGACTGTCAAGG  1296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATCGGAGATCAACATGGGGTCTGCAGACACAGAGACTGTCAAGG  937

seq1  ATGCTGCCAGAGTCCCATCAGATTCCACAGGGCATCGTCTGAGGCTGGCC  1346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCAGAGTCCCATCAGATTCCACAGGGCATCGTCTGAGGCTGGCC  987

seq1  AGCTTTTTTAACTATTCTCTTCAGGATTTAGATTGTCAGAGTCCTAATAA  1396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTTAACTATTCTCTTCAGGATTTAGATTGTCAGAGTCCTAATAA  1037

seq1  ATTTAACTTTCACTCAACAGTAGCATCCAAATTTCTCTTAATATAAAATA  1446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTTTCACTCAACAGTAGCATCCAAATTTCTCTTAATATAAAATA  1087

seq1  CTCAGGCTGGAGAGATGAGTCAGAGACTAAGAGCACTCACTGCTCTTCCG  1496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTGGAGAGATGAGTCAGAGACTAAGAGCACTCACTGCTCTTCCG  1137

seq1  AAGGTCCTGAATTC  1510
      ||||||||||||||
seq2  AAGGTCCTGAATTC  1151

seq1: chr10_43614480_43615375
seq2: B6Ng01-044E06.g_68_964

seq1  GAATTCAACAGTTACTATTAGAGGGTAAGCTATTCCTAATTTAAATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGTTACTATTAGAGGGTAAGCTATTCCTAATTTAAATAGCA  50

seq1  GGTCCACCTCTACCTCTACCACCACCACCACCACCACCCCCTATAGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACCTCTACCTCTACCACCACCACCACCACCACCCCCTATAGATTG  100

seq1  AAATAAACAAAAACCCCTCGAGCCTATATTCTAAAACACACTGTGGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAAAAACCCCTCGAGCCTATATTCTAAAACACACTGTGGTAGC  150

seq1  CGGGTGGTGGTGACGCACGCCTTTAATTCCAGCACCTGGGAGGCAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGGTGGTGACGCACGCCTTTAATTCCAGCACCTGGGAGGCAGAAGC  200

seq1  AGGGGTATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTAAGTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTAAGTTCCAG  250

seq1  CAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAACCACAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAACCACAACAA  300

seq1  AAAAATATAAAACACACCGTGGTTCATCTAAGTTTTGGTGGGCAGCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATAAAACACACCGTGGTTCATCTAAGTTTTGGTGGGCAGCATTC  350

seq1  TGAGTACCTTTTCTTGCTCCACTTATTTTTCCTTTTAAGATCTAAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACCTTTTCTTGCTCCACTTATTTTTCCTTTTAAGATCTAAATATT  400

seq1  TTGGTAACCATTTTTGTTTTCAGCCTGGTAAGTTAAAGAATAAAACTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACCATTTTTGTTTTCAGCCTGGTAAGTTAAAGAATAAAACTAAG  450

seq1  GGTTACCACACAGTTCTAAGAGATGGCGAGCAGGTGCTGATGGGCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCACACAGTTCTAAGAGATGGCGAGCAGGTGCTGATGGGCTCTCA  500

seq1  GTGTCCTCAGGCGGAATAATGCCTGCCAGGACCAAGCCCTCCTGACAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCAGGCGGAATAATGCCTGCCAGGACCAAGCCCTCCTGACAAGG  550

seq1  CTCCTACACTTTGCAAGCAGTACTCACTGATGTGGCTGGCCATCGCCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACACTTTGCAAGCAGTACTCACTGATGTGGCTGGCCATCGCCTAC  600

seq1  AGAGTCTGTATGTAATGAGCAAGCACTGAAGAGGCAGTAGTCTTTTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGTATGTAATGAGCAAGCACTGAAGAGGCAGTAGTCTTTTCTCA  650

seq1  GTGCTTCCCACAAGGTTGTAATTAAGCTCTGGTTATCTTAAAGCATCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCCACAAGGTTGTAATTAAGCTCTGGTTATCTTAAAGCATCTGT  700

seq1  ATTTTATCTTTAAGTGTCAAAACCACCCATCTTTATATCAATGTTGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTTTAAGTGTCAAAACCACCCATCTTTATATCAATGTTGTAAT  750

seq1  CAGACTTTACCTTTTAACATATTTGATGCACATGTTGTCTCAATGCCAGT  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAGACTTTACCTTTT-ACATATTTGATGCACATGTTGTCTCAATGCCAGT  799

seq1  TGTGCTAAAGTTGTCTTTCACAGCAACAGGAATTCCATCTAAATCTCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAAAGTTGTCTTTCACAGCAACAGGAATTCCATCTAAATCTCCAA  849

seq1  GAGACTGACCTGCATTTAAAAGCCAAAGGGGGGT--GGGGGAGGGGTG  896
      ||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  GAGACTGACCTGCATTTAAAAGCCAAAGGGGGGTTGGGGGGAGGGGTG  897