BAC Information

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BAC

Clone NameB6Ng01-044L21
Chromosome10 (Build37)
Map Location 93,287,529 - 93,433,078
singlet/doubletdoublet
Overlap geneUsp44, Metap2, Vezt
Upstream geneGm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907
Downstream geneFgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L21.bB6Ng01-044L21.g
ACCDH870410DH870411
length6131,175
definitionDH870410|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L21, 5' end.DH870411|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,287,529 - 93,288,141)(93,431,896 - 93,433,078)
sequence
gaattctggtcaaaggcccacctgatctatagatggagttccaggacagc
cagaattccccagtgtgtgtgagggtgggattcagcagcccctgcatcat
tgcctactactattaaaacactatgtagctatcttcatatatggtaacat
tatcactcaattctctggaattcaaccggtgtcaatataaattgaaagac
aaatgctaagtgttttgagaaggagaggggatcaactagcaaacagtctg
tggctttggagcttgtcaagaaaggaactttcttgtttgtgaccttgttt
caagaaaatactttcaaagacataaggtgagaaaactagcatcaggtagc
caaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaa
aacaaaacaaaacaaaacaaaacaccaccaccaacagaactgttaaggaa
acagaaaggcagagttagaagacagaggttttccataggtcaccactatc
ctagacacagaatctctaccatagaggcatggttttaaaactcagagaac
tttgtagatagcttcttcaaagaatgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgt
gaattcaccttctctgctggcctggctgcagaagtggccgcccggtccct
gtcctttaccaccatgcaggaacaaacttttggcgacgaggaggaagaac
agctagttgaaggcggtgaaaatgaggtggaggaaaaataaaagccaaga
tgaagcgatggccttgattgttctttttacaaaagtgttctagctgcaag
actggaaagagaaatgagtgtgtgtttactctctataaggctacggcgtg
aatttacagggtgaatactgatttgaaaacctgacctgaaactagtagat
acctgtctagtcagatcctttaggcataggagagaaaggtaagggacttt
tttaaaaaataaataaataaactgctgttttatttgtggcaaaactgata
atcttggcaaatctttaagtacttttaataagacatgaatttatcacttt
ttgccaaaactttgctgccacaaggtaactagggtgattgtcttcccgag
cagaaacatttagaatgagccctttctactgtgtccttgcagtgtgaact
gcagcggtcatgttaatacattgttcgtactttattttgtttataccact
cgtaaaacaaagagacaggttctaaataaaagtatttaattaccacaacc
gatgtgtgctggggtttggaactggaaagtagttagcagggagctgggac
tgcagcgtatcttggacatttctcacgggtcatgcagaggttaagaggac
aatgtcctcttaggggacaccccatgatgtccaagcgctgtcactccagc
aaaggccccagccccagccctgcaggaactaatttacatcagtttactgg
aagacaactgtgcctctgcagtagtaggtcctgtgctgtcttctagcctg
gcctgccttactaagactcaggaaacgcgtcagctatcttggaaagcatc
cttgtccctttgtgcttcatcgtgaatgcgtctcgagatgctttccagag
accagtcttgtccgcttgtggctggaattgtgttttcatgaaattgcaag
aaacagtctccttctgaaactgtgccactgggggcgcttccagactttat
aagcatcttctgtgaggaatgtaggaagaaaaaccaccaaatcaaacacc
aactaatggatgcttgctgtttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93287529_93288141
seq2: B6Ng01-044L21.b_44_656

seq1  GAATTCTGGTCAAAGGCCCACCTGATCTATAGATGGAGTTCCAGGACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCAAAGGCCCACCTGATCTATAGATGGAGTTCCAGGACAGC  50

seq1  CAGAATTCCCCAGTGTGTGTGAGGGTGGGATTCAGCAGCCCCTGCATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCCCCAGTGTGTGTGAGGGTGGGATTCAGCAGCCCCTGCATCAT  100

seq1  TGCCTACTACTATTAAAACACTATGTAGCTATCTTCATATATGGTAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTACTATTAAAACACTATGTAGCTATCTTCATATATGGTAACAT  150

seq1  TATCACTCAATTCTCTGGAATTCAACCGGTGTCAATATAAATTGAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCAATTCTCTGGAATTCAACCGGTGTCAATATAAATTGAAAGAC  200

seq1  AAATGCTAAGTGTTTTGAGAAGGAGAGGGGATCAACTAGCAAACAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAAGTGTTTTGAGAAGGAGAGGGGATCAACTAGCAAACAGTCTG  250

seq1  TGGCTTTGGAGCTTGTCAAGAAAGGAACTTTCTTGTTTGTGACCTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGGAGCTTGTCAAGAAAGGAACTTTCTTGTTTGTGACCTTGTTT  300

seq1  CAAGAAAATACTTTCAAAGACATAAGGTGAGAAAACTAGCATCAGGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATACTTTCAAAGACATAAGGTGAGAAAACTAGCATCAGGTAGC  350

seq1  CAAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAA  400

seq1  AACAAAACAAAACAAAACAAAACACCACCACCAACAGAACTGTTAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAACAAAACACCACCACCAACAGAACTGTTAAGGAA  450

seq1  ACAGAAAGGCAGAGTTAGAAGACAGAGGTTTTCCATAGGTCACCACTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGGCAGAGTTAGAAGACAGAGGTTTTCCATAGGTCACCACTATC  500

seq1  CTAGACACAGAATCTCTACCATAGAGGCATGGTTTTAAAACTCAGAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACACAGAATCTCTACCATAGAGGCATGGTTTTAAAACTCAGAGAAC  550

seq1  TTTGTAGATAGCTTCTTCAAAGAATGTGTGTGTGTGTGTGTGTGTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGATAGCTTCTTCAAAGAATGTGTGTGTGTGTGTGTGTGTGTGTG  600

seq1  TGTGTGTGTGTGT  613
      |||||||||||||
seq2  TGTGTGTGTGTGT  613

seq1: chr10_93431896_93433078
seq2: B6Ng01-044L21.g_68_1242 (reverse)

seq1  CTGAAACAGC-AGCATCAACTGAGTTTTGTTGTTTTGTTTTTGTTTGTTT  49
      |||||||||| |||||| | | ||  ||| |||||    |||| | ||||
seq2  CTGAAACAGCAAGCATCCA-TTAG--TTGGTGTTT--GATTTGGTGGTTT  45

seq1  TTCTTTCTTACATTCCTCACAGAAGAATGCCTATAAAGTCTGGGAGCG--  97
      ||| ||| ||||||||||||||||| |||| |||||||||||| ||||  
seq2  TTC-TTCCTACATTCCTCACAGAAG-ATGCTTATAAAGTCTGGAAGCGCC  93

seq1  CACAGTGGCAACAGGTTTCAGAAGGAGACTGTTTCTGCAAATTTCATTGA  147
      | ||||||| ||| ||||||||||||||||||||||   ||||||| |||
seq2  CCCAGTGGC-ACA-GTTTCAGAAGGAGACTGTTTCTTGCAATTTCA-TGA  140

seq1  AAACACAATTCCAGCACAAAGCGGACAAGACTGGTCTCTGGAAAGCATCT  197
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  AAACACAATTCCAGCCACAAGCGGACAAGACTGGTCTCTGGAAAGCATCT  190

seq1  CGAGACGCATTCACGATGAAGCACAAAGGGACAAGGATGCTTTCCAAGAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACGCATTCACGATGAAGCACAAAGGGACAAGGATGCTTTCCAAGAT  240

seq1  AGCTGACGCGTTTCCTGAGTCTTAGTAAGGCAGGCCAGGCTAGAAGACAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACGCGTTTCCTGAGTCTTAGTAAGGCAGGCCAGGCTAGAAGACAG  290

seq1  CACAGGACCTACCTACTGCAGAGGCACAGTTGTCTTCCAGTAAACTGATG  347
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACCTA-CTACTGCAGAGGCACAGTTGTCTTCCAGTAAACTGATG  339

seq1  TAAATTAGTTCCTGCAGGGCTGGGGCTGGGGCCTTTGCTGGAGTGACAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGTTCCTGCAGGGCTGGGGCTGGGGCCTTTGCTGGAGTGACAGC  389

seq1  GCTTGGACATCATGGGGTGTCCCCTAAGAGGACATTGTCCTCTTAACCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGACATCATGGGGTGTCCCCTAAGAGGACATTGTCCTCTTAACCTC  439

seq1  TGCATGACCCGTGAGAAATGTCCAAGATACGCTGCAGTCCCAGCTCCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACCCGTGAGAAATGTCCAAGATACGCTGCAGTCCCAGCTCCCTG  489

seq1  CTAACTACTTTCCAGTTCCAAACCCCAGCACACATCGGTTGTGGTAATTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTACTTTCCAGTTCCAAACCCCAGCACACATCGGTTGTGGTAATTA  539

seq1  AATACTTTTATTTAGAACCTGTCTCTTTGTTTTACGAGTGGTATAAACAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTTATTTAGAACCTGTCTCTTTGTTTTACGAGTGGTATAAACAA  589

seq1  AATAAAGTACGAACAATGTATTAACATGACCGCTGCAGTTCACACTGCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTACGAACAATGTATTAACATGACCGCTGCAGTTCACACTGCAA  639

seq1  GGACACAGTAGAAAGGGCTCATTCTAAATGTTTCTGCTCGGGAAGACAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGTAGAAAGGGCTCATTCTAAATGTTTCTGCTCGGGAAGACAAT  689

seq1  CACCCTAGTTACCTTGTGGCAGCAAAGTTTTGGCAAAAAGTGATAAATTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTAGTTACCTTGTGGCAGCAAAGTTTTGGCAAAAAGTGATAAATTC  739

seq1  ATGTCTTATTAAAAGTACTTAAAGATTTGCCAAGATTATCAGTTTTGCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTATTAAAAGTACTTAAAGATTTGCCAAGATTATCAGTTTTGCCA  789

seq1  CAAATAAAACAGCAGTTTATTTATTTATTTTTTAAAAAAGTCCCTTACCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAACAGCAGTTTATTTATTTATTTTTTAAAAAAGTCCCTTACCT  839

seq1  TTCTCTCCTATGCCTAAAGGATCTGACTAGACAGGTATCTACTAGTTTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTATGCCTAAAGGATCTGACTAGACAGGTATCTACTAGTTTCA  889

seq1  GGTCAGGTTTTCAAATCAGTATTCACCCTGTAAATTCACGCCGTAGCCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGTTTTCAAATCAGTATTCACCCTGTAAATTCACGCCGTAGCCTT  939

seq1  ATAGAGAGTAAACACACACTCATTTCTCTTTCCAGTCTTGCAGCTAGAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGTAAACACACACTCATTTCTCTTTCCAGTCTTGCAGCTAGAAC  989

seq1  ACTTTTGTAAAAAGAACAATCAAGGCCATCGCTTCATCTTGGCTTTTATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTAAAAAGAACAATCAAGGCCATCGCTTCATCTTGGCTTTTATT  1039

seq1  TTTCCTCCACCTCATTTTCACCGCCTTCAACTAGCTGTTCTTCCTCCTCG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCACCTCATTTTCACCGCCTTCAACTAGCTGTTCTTCCTCCTCG  1089

seq1  TCGCCAAAAGTTTGTTCCTGCATGGTGGTAAAGGACAGGGACCGGGCGGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCAAAAGTTTGTTCCTGCATGGTGGTAAAGGACAGGGACCGGGCGGC  1139

seq1  CACTTCTGCAGCCAGGCCAGCAGAGAAGGTGAATTC  1183
      ||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGCAGCCAGGCCAGCAGAGAAGGTGAATTC  1175