BAC Information

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BAC

Clone NameB6Ng01-045J18
Chromosome19 (Build37)10 (Build37)
Map Location 14,951,303 - 14,952,354104,054,703 - 104,055,263
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
Downstream geneEG433225, EG635497, Pomc-ps1, LOC667482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045J18.bB6Ng01-045J18.g
ACCDH871015DH871016
length1,0431,076
definitionDH871015|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J18, 5' end.DH871016|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,951,303 - 14,952,354)(104,054,703 - 104,055,263)
sequence
gaattccatctggtcgatatctaacattcagagcttaaatggaaggccct
atagagtttctagatttggagatggagggatctcactgtgttttataaag
tcattgaaagagatgtgtgtggttcaagcctgctgcatctgcaaaaagtc
agaaacctatacacttcatccagaaaattattttaagtgtggaaacaatg
cctgatgagtcttgattctgtgcccaccaacatcttaatatgagtgagac
tcggggtctcctttgtagagctatctatccccttctgtattgtcaaagaa
caattcctactcaataattttgggtctggttctcattttcttacagctta
atatagtcctgggttctactgaagttaatatttaaatattcttctcttaa
acgcattagcatggctgtcagaaaatgagaccatgagaaaactcactgag
acttaaaagaatgcaatgtcatttactatcttaatatgaacagaatatta
ctagtagaagtctaggaccttctaggctattacatatcgaccttggttag
tacccgaaatacactcaagaagctggcaagcatcaatgcttgaatcctat
ttgataaaatctgattcaattaatctagggtaaagcataagtgtgaaaaa
tttaaaagctttcctgttgattcttgtgtgttccaggcttatttataata
atcctcatgcctgcatattctttaactaatgtaactttactcccttgttt
tctgatttctgtttattatttaatatgaatttattgattcatttgtccat
tcatttagccttcttgtttcaaatattttgcaataaaacttacagtgaac
aaagaaaacccttgagcaatttcattttttgtttgttttgtgtgtgtgtg
tatgtatgtatgtttaagtgtcagatttaatgatagcttacccagtgaag
ctaccatcagttatttcctatcctaggatgaacttggaaaacatttttcc
cttctgtcctccacctcggtcaaactagaagatataattttta
gaattctcagcactcacataaaaaggtggacatggcaatgcatactgata
atccccttcttacgaagggggaggcaggaagattgctgggcttgaaaact
cgtaattctcattgttagatagtatataatatgtagatagatagatagat
agatagatagatagatagataccttttataaacttagggtttcattagaa
atgaggctttctatcttaatttttcactttcaattatgtagtaaagtgac
aattccaagaagagtaggtttttattaataacagatgccagaaaataatg
atgcaacctgttcaaaggaaaatattgcagaaaaataaacagtgaagtca
aaattaaatatgtagctaaactgactttcaagaattaagttagcataatg
acctattaaattaggtttcctgtagatgttcaacagtcttgaaataatgg
ttatacactgagaggaacttctaagggaaaaaaaagacagcatataaaat
gcaacaataaatctgtatgacaagaacttcaagtctctgaagaaagaaat
taaagaagacctcagaagatggaaagatctcccatgctcatggattggca
ggatcaacatagtaaaaaaatggctatcttgtcaaaagcaatctacagat
tcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaa
agagcaatctgcaaattcatctggaataacaaaaaacctaggatagcaaa
aactcttctcaatgataaaagaacctctggtggaatcaccatgactgacc
taaagctgtactacagagcaattgtgataaaaactgcatggtactgggta
tagcaacagacaagtagaccaatgaacagaattgaagacccagaaatgaa
cccacacacctatggtcacttgacaagtgatctttgacaagggagctaaa
ccatccagtggaaaaaagacaccattttcaacaaatggtgctgcataact
gttgatatcatgtagaaaatgtgaaatcgattcattcttatcttccttgt
actaggtctaatctaatgggattaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_14951303_14952354
seq2: B6Ng01-045J18.b_42_1084

seq1  GAATTCCATCTGGTCGATATCTAACATTCAGAGCTTAAATGGAAGGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGGTCGATATCTAACATTCAGAGCTTAAATGGAAGGCCCT  50

seq1  ATAGAGTTTCTAGATTTGGAGATGGAGGGATCTCACTGTGTTTTATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTTCTAGATTTGGAGATGGAGGGATCTCACTGTGTTTTATAAAG  100

seq1  TCATTGAAAGAGATGTGTGTGGTTCAAGCCTGCTGCATCTGCAAAAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAAAGAGATGTGTGTGGTTCAAGCCTGCTGCATCTGCAAAAAGTC  150

seq1  AGAAACCTATACACTTCATCCAGAAAATTATTTTAAGTGTGGAAACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTATACACTTCATCCAGAAAATTATTTTAAGTGTGGAAACAATG  200

seq1  CCTGATGAGTCTTGATTCTGTGCCCACCAACATCTTAATATGAGTGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAGTCTTGATTCTGTGCCCACCAACATCTTAATATGAGTGAGAC  250

seq1  TCGGGGTCTCCTTTGTAGAGCTATCTATCCCCTTCTGTATTGTCAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGTCTCCTTTGTAGAGCTATCTATCCCCTTCTGTATTGTCAAAGAA  300

seq1  CAATTCCTACTCAATAATTTTGGGTCTGGTTCTCATTTTCTTACAGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCTACTCAATAATTTTGGGTCTGGTTCTCATTTTCTTACAGCTTA  350

seq1  ATATAGTCCTGGGTTCTACTGAAGTTAATATTTAAATATTCTTCTCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTCCTGGGTTCTACTGAAGTTAATATTTAAATATTCTTCTCTTAA  400

seq1  ACGCATTAGCATGGCTGTCAGAAAATGAGACCATGAGAAAACTCACTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATTAGCATGGCTGTCAGAAAATGAGACCATGAGAAAACTCACTGAG  450

seq1  ACTTAAAAGAATGCAATGTCATTTACTATCTTAATATGAACAGAATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAGAATGCAATGTCATTTACTATCTTAATATGAACAGAATATTA  500

seq1  CTAGTAGAAGTCTAGGACCTTCTAGGCTATTACATATCGACCTTGGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGAAGTCTAGGACCTTCTAGGCTATTACATATCGACCTTGGTTAG  550

seq1  TACCCGAAATACACTCAAGAAGCTGGCAAGCATCAATGCTTGAATCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGAAATACACTCAAGAAGCTGGCAAGCATCAATGCTTGAATCCTAT  600

seq1  TTGATAAAATCTGATTCAATTAATCTAGGGTAAAGCATAAGTGTGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAATCTGATTCAATTAATCTAGGGTAAAGCATAAGTGTGAAAAA  650

seq1  TTTAAAAGCTTTCCTGTTGATTCTTGTGTGTTCCAGGCTTATTTATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGCTTTCCTGTTGATTCTTGTGTGTTCCAGGCTTATTTATAATA  700

seq1  ATCCTCATGCCTGCATATTCTTTAACTAATGTAACTTTACTCCCTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATGCCTGCATATTCTTTAACTAATGTAACTTTACTCCCTTGTTT  750

seq1  TCTGATTTCTGTTTATTATTTAATATGAATTTATTGATTCATTTGTCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTCTGTTTATTATTTAATATGAATTTATTGATTCATTTGTCCAT  800

seq1  TCATTTAGCCTTCTTGTTTCAAATATTTTGCAATAAAACTTACAGTGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGCCTTCTTGTTTCAAATATTTTGCAATAAAACTTACAGTGAAC  850

seq1  AAAGAAAACCCTTGAGCAATTTCATTTTTTGTTTGTTTTGTGTGTGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACCCTTGAGCAATTTCATTTTTTGTTTGTTTTGTGTGTGTGTG  900

seq1  TATGTATGTATGTTTAAGTGTCAGATTTAATGATAGCTTATCCAAGTGAA  950
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  TATGTATGTATGTTTAAGTGTCAGATTTAATGATAGCTTA-CCCAGTGAA  949

seq1  GCTACCATCAGTTATTTCCCTATGCCTAGGCATGAACCTTGAAAGAACAT  1000
      ||||||||||||||||| ||||| |||||| |||||| | |||  |||||
seq2  GCTACCATCAGTTATTT-CCTAT-CCTAGG-ATGAACTTGGAA--AACAT  994

seq1  TTTACTCCTCTGCCATCGACCTCAGGTATAACTGAGAAGGATATAATTTT  1050
      ||| | | |||| | || ||||| |||  |||| |||| |||||||||||
seq2  TTTTCCCTTCTGTCCTCCACCTC-GGTCAAACT-AGAA-GATATAATTTT  1041

seq1  TA  1052
      ||
seq2  TA  1043

seq1: chr10_104054703_104055263
seq2: B6Ng01-045J18.g_576_1141 (reverse)

seq1  CTTAATCCACTTAGATTTTACCTTAGTACAAGG-AGATAGTAATTGATC-  48
      ||||||||  |||||||  ||| |||||||||| |||||  |||  ||| 
seq2  CTTAATCCCATTAGATTAGACC-TAGTACAAGGAAGATAAGAATGAATCG  49

seq1  AATTCACAATCTTCTACATGATAACAGCCAGTTGTGCCAGCATGATTTGT  98
      | ||||| || |||||||||||| ||  ||||| || |||||  ||||||
seq2  ATTTCAC-ATTTTCTACATGATATCA-ACAGTTATG-CAGCACCATTTGT  96

seq1  TGAAAATGCTGTCTTTTTTTCCACTGGATAGTTTTAGCTCCCTTGTCAAA  148
      |||||||| |||| ||||||||||||||| | ||||||||||||||||||
seq2  TGAAAATGGTGTC-TTTTTTCCACTGGAT-GGTTTAGCTCCCTTGTCAAA  144

seq1  GA-------TCAAGTGACCATAGGTGTGTGGGTTCATCTCTGGATCTTCA  191
      ||       |||||||||||||||||||||||||||| ||||| ||||||
seq2  GATCACTTGTCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCA  194

seq1  ATTCTGTTCCATTGGTCTACTTGTCTGTCGCTATA-CAAGTACCATGCAG  240
      |||||||| ||||||||||||||||||| |||||| | ||||||||||||
seq2  ATTCTGTT-CATTGGTCTACTTGTCTGTTGCTATACCCAGTACCATGCAG  243

seq1  TTTTTATCACAATTGCTCTGTAGTACAGTTTTAGGTCCGGGATGGTGATT  290
      |||||||||||||||||||||||||||| |||||||| |  |||||||||
seq2  TTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTCAGTCATGGTGATT  293

seq1  CCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTT  340
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCACCAGAGGTTCTTTTATCATTGAGAAGAGTTTTTGCTATCCTAGGTTT  343

seq1  TTTGTTATTCCAGATGAATCTGCCGATTGCCCTTTATAATTCTTTGAAGA  390
      ||||||||||||||||||| ||| |||||| |||| |||||| |||||||
seq2  TTTGTTATTCCAGATGAATTTGCAGATTGCTCTTTCTAATTCGTTGAAGA  393

seq1  ATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTT  440
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTGAGTTGGAATTTTAATGGGGATTGCATTGAATCTGTAGATTGCTTTT  443

seq1  GGCAAGATAGCCA--TTTTTACTATATTGATCCTGCCGATCCATGAGCAT  488
      | |||||||||||  |||||||||| ||||||||||| ||||||||||||
seq2  GACAAGATAGCCATTTTTTTACTATGTTGATCCTGCCAATCCATGAGCAT  493

seq1  GGGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTCTTTCTTCAGAGA  538
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGGAGATCTTTCCATCTTCTGAGGTCTTCTTTAATTTCTTTCTTCAGAGA  543

seq1  CATGAAGTTCTTGTCATACAGAT  561
      | |||||||||||||||||||||
seq2  CTTGAAGTTCTTGTCATACAGAT  566