BAC Information

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BAC

Clone NameB6Ng01-045M14
Chromosome10 (Build37)
Map Location 76,889,874 - 77,021,776
singlet/doubletdoublet
Overlap gene1810008A18Rik, Itgb2
Upstream genePcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1
Downstream genePttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045M14.bB6Ng01-045M14.g
ACCDH871143DH871144
length8721,028
definitionDH871143|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M14, 5' end.DH871144|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,020,899 - 77,021,776)(76,889,874 - 76,890,901)
sequence
gaattcactgaccaatggcccaatcctccaggcaagttagctcagctttg
tagagaggccacctagggctgtacacttaggatcagggcaaggtgctact
ggccgggggtggggatggggcagccgcagaaaccaccactcttagagttt
ctgggaggaggtatacagccagtgcaggtctgaggtgtaggatagagcat
ctctctctctctctttttaaagacgtatttattaataataattatatcta
agtatattgtagctgtcttcagacataccagaagaaggtatcagatctca
ttacagatggttatgagccaccatgtggttgctaggatttgaattcagag
cggtcagtggctcttaaccacggagccatctctcgagctcaggatagagc
atctcaaagatcagaaactgggacagcaattggaaggaaatggctagtat
ccagaccggcaactacagcctctatgctttgtacactgcatccttcctcc
tccccctcctcctcctcttcttcctcttcctcctcttcttcctcttcctc
tttctcctcctcctcctctctctcttcctcctcctcaactgaactgaggc
ctgtatatacatgcccacaggatggttttagggcccaggctgccaggaat
ggtcagctatcccaaaggagctctagcaacatgctgcaaatctgattggt
cagagtctttgaggtcagagagctaggatttgggagttcctgtagagcat
ctgtttcctgggtgagctggccacacctactttacttgagacatgtgctc
acagcagcatgccatgctatgggctggcctcatcgtcagaccctattcct
taactgatgcccacagggcaca
gaattctagtcaggaacctctctgcttggctatccacccaaagtctggct
tcatgggctactgtggaggccttagagtgatggagaagccttggggcttc
ctcttggaccgattgtggtctggttgctaggcactcccttcctgtgtgct
gtatcctgatgatgctgtagctaggcctaggagatgaggccgtcaagtct
cattttctatgaaaccattgcaggtatctctgacagggatgaaaataggt
cactcgctagacagtagtccctcctcagttttcagattcctcatcagaga
agttacaattttgtcaaaggaaaatgatttcaaacaaagtacattaaaaa
aatcgaaacatataagccagatttctaaatggaagtcattctttctacct
aaaccgggtcccagacacccttcttacctgtgatggaggtcagtatttaa
aagatttggatctaaaggggataatatccccacctgtccaatgctgagca
ccacaggagcatgcactagagctactaacctgtatgtcaacaagactatg
caggggaggttcccacttgcactgtcagatcgcaggtgggagtaggggag
agcccccagatgtccccatggtgaggagaggacaaccaggcctgccctgg
gagaggatttagagagccacagcccgtgcaggcccaggatcagggccagc
ttccctctgtctcactggtttccagggccacattccagagagatgagagc
atttacagttctgtgcatatctgttggagtcccatacataacataacatc
agcccaccttattttttgctttcaagaattccacttctatttttggtgaa
tataaaatctttgactattcccaaatggaaaaacagatttcttccttgac
tgtctggtaataacttcgttgcatttggtctgtgctgacaagaacttctg
tgaaccctccctaccttccatgttggcagctgcctgggtacaccacacag
aacggggtctcagccccacttgccgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77020899_77021776
seq2: B6Ng01-045M14.b_43_914 (reverse)

seq1  TGTGGCCTGTGGGGCATCAGTTCATGGAAAAGGTGTCTGCAGATGAGGCC  50
      |||| ||||| ||||||||||| | |||| ||| |||||  |||||||||
seq2  TGTGCCCTGT-GGGCATCAGTT-AAGGAATAGG-GTCTGACGATGAGGCC  47

seq1  AGCCCATAGCATGGCATGCCTGCTTGTGAGCCACATGTCTTCAAGTAAAG  100
      |||||||||||||||||| |||| |||||| |||||||| ||||||||||
seq2  AGCCCATAGCATGGCATG-CTGC-TGTGAG-CACATGTC-TCAAGTAAAG  93

seq1  TAGGTGTGGCCAGCTCACCCAGGAAACAGATGCTCTACAGGAACTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGGTGTGGCCAGCTCACCCAGGAAACAGATGCTCTACAGGAACTCCCAA  143

seq1  ATCCTAGCTCTCTGACCTCAGAGACTCTGACCAATCAGATTTGCAGCATG  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCCTAGCTCTCTGACCTCAAAGACTCTGACCAATCAGATTTGCAGCATG  193

seq1  TTGCTAGAGCTCCTTTGGGATAGCTGACCATTCCTGGCAGCCTGGGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGAGCTCCTTTGGGATAGCTGACCATTCCTGGCAGCCTGGGCCCT  243

seq1  AAAACCATCCTGTGGGCATGTATATACAGGCCTCAGTTCAGTTGAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATCCTGTGGGCATGTATATACAGGCCTCAGTTCAGTTGAGGAGG  293

seq1  AGGAAGAGAGAGAGGAGGAGGAGGAGAAAGAGGAAGAGGAAGAAGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAGAGAGGAGGAGGAGGAGAAAGAGGAAGAGGAAGAAGAGGAG  343

seq1  GAAGAGGAAGAAGAGGAGGAGGAGGGGGAGGAGGAAGGATGCAGTGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAGAAGAGGAGGAGGAGGGGGAGGAGGAAGGATGCAGTGTACA  393

seq1  AAGCATAGAGGCTGTAGTTGCCGGTCTGGATACTAGCCATTTCCTTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAGAGGCTGTAGTTGCCGGTCTGGATACTAGCCATTTCCTTCCAA  443

seq1  TTGCTGTCCCAGTTTCTGATCTTTGAGATGCTCTATCCTGAGCTCGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCCCAGTTTCTGATCTTTGAGATGCTCTATCCTGAGCTCGAGAG  493

seq1  ATGGCTCCGTGGTTAAGAG-CACTGACCGCTCTGAATTCAAATCCTAGCA  549
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGGCTCCGTGGTTAAGAGCCACTGACCGCTCTGAATTCAAATCCTAGCA  543

seq1  ACCACATGGTGGCTCATAACCATCTGTAATGAGATCTGATACCTTCTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTGGCTCATAACCATCTGTAATGAGATCTGATACCTTCTTCT  593

seq1  GGTATGTCTGAAGACAGCTACAATATACTTAGATATAATTATTATTAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTCTGAAGACAGCTACAATATACTTAGATATAATTATTATTAATA  643

seq1  AATACGTCTTTAAAAAGAGAGAGAGAGAGATGCTCTATCCTACACCTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGTCTTTAAAAAGAGAGAGAGAGAGATGCTCTATCCTACACCTCAG  693

seq1  ACCTGCACTGGCTGTATACCTCCTCCCAGAAACTCTAAGAGTGGTGGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACTGGCTGTATACCTCCTCCCAGAAACTCTAAGAGTGGTGGTTT  743

seq1  CTGCGGCTGCCCCATCCCCACCCCCGGCCAGTAGCACCTTGCCCTGATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGCTGCCCCATCCCCACCCCCGGCCAGTAGCACCTTGCCCTGATCC  793

seq1  TAAGTGTACAGCCCTAGGTGGCCTCTCTACAAAGCTGAGCTAACTTGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTACAGCCCTAGGTGGCCTCTCTACAAAGCTGAGCTAACTTGCCT  843

seq1  GGAGGATTGGGCCATTGGTCAGTGAATTC  878
      |||||||||||||||||||||||||||||
seq2  GGAGGATTGGGCCATTGGTCAGTGAATTC  872

seq1: chr10_76889874_76890901
seq2: B6Ng01-045M14.g_71_1098

seq1  GAATTCTAGTCAGGAACCTCTCTGCTTGGCTATCCACCCAAAGTCTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCAGGAACCTCTCTGCTTGGCTATCCACCCAAAGTCTGGCT  50

seq1  TCATGGGCTACTGTGGAGGCCTTAGAGTGATGGAGAAGCCTTGGGGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCTACTGTGGAGGCCTTAGAGTGATGGAGAAGCCTTGGGGCTTC  100

seq1  CTCTTGGACCGATTGTGGTCTGGTTGCTAGGCACTCCCTTCCTGTGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGACCGATTGTGGTCTGGTTGCTAGGCACTCCCTTCCTGTGTGCT  150

seq1  GTATCCTGATGATGCTGTAGCTAGGCCTAGGAGATGAGGCCGTCAAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTGATGATGCTGTAGCTAGGCCTAGGAGATGAGGCCGTCAAGTCT  200

seq1  CATTTTCTATGAAACCATTGCAGGTATCTCTGACAGGGATGAAAATAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTATGAAACCATTGCAGGTATCTCTGACAGGGATGAAAATAGGT  250

seq1  CACTCGCTAGACAGTAGTCCCTCCTCAGTTTTCAGATTCCTCATCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCTAGACAGTAGTCCCTCCTCAGTTTTCAGATTCCTCATCAGAGA  300

seq1  AGTTACAATTTTGTCAAAGGAAAATGATTTCAAACAAAGTACATTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAATTTTGTCAAAGGAAAATGATTTCAAACAAAGTACATTAAAAA  350

seq1  AATCGAAACATATAAGCCAGATTTCTAAATGGAAGTCATTCTTTCTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAAACATATAAGCCAGATTTCTAAATGGAAGTCATTCTTTCTACCT  400

seq1  AAACCGGGTCCCAGACACCCTTCTTACCTGTGATGGAGGTCAGTATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGGGTCCCAGACACCCTTCTTACCTGTGATGGAGGTCAGTATTTAA  450

seq1  AAGATTTGGATCTAAAGGGGATAATATCCCCACCTGTCCAATGCTGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTGGATCTAAAGGGGATAATATCCCCACCTGTCCAATGCTGAGCA  500

seq1  CCACAGGAGCATGCACTAGAGCTACTAACCTGTATGTCAACAAGACTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAGCATGCACTAGAGCTACTAACCTGTATGTCAACAAGACTATG  550

seq1  CAGGGGAGGTTCCCACTTGCACTGTCAGATCGCAGGTGGGAGTAGGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGGTTCCCACTTGCACTGTCAGATCGCAGGTGGGAGTAGGGGAG  600

seq1  AGCCCCCAGATGTCCCCATGGTGAGGAGAGGACAACCAGGCCTG-CCTGG  649
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCCCCCAGATGTCCCCATGGTGAGGAGAGGACAACCAGGCCTGCCCTGG  650

seq1  GAGAGGATTTAGAGAGCCACAGCCCGTGCAGGCCCAGGATCAGGGCCAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATTTAGAGAGCCACAGCCCGTGCAGGCCCAGGATCAGGGCCAGC  700

seq1  TTCCCTCTGTCTCACTGG-TTCCAGGGCCACATTCCAGAGAGATGAGAGC  748
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCCCTCTGTCTCACTGGTTTCCAGGGCCACATTCCAGAGAGATGAGAGC  750

seq1  ATTTACAG-TCTGTGCATATCTGTTGGAGTCCCATACAT-ACAT-ACATC  795
      |||||||| |||||||||||||||||||||||||||||| |||| |||||
seq2  ATTTACAGTTCTGTGCATATCTGTTGGAGTCCCATACATAACATAACATC  800

seq1  AGCCCACC-TATTTTTTGCTTTCAAGAATTCCACTTCTATTTTTGGTGGA  844
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  AGCCCACCTTATTTTTTGCTTTCAAGAATTCCACTTCTATTTTTGGT-GA  849

seq1  ATATAAAATCTTTGACTATTTCCCAAAATGGAAAAACAGATTTCCTCCCT  894
      ||||||||||||||||||||  || |||||||||||||||||| || |||
seq2  ATATAAAATCTTTGACTATT--CCCAAATGGAAAAACAGATTT-CTTCCT  896

seq1  TGACTGTCTGGTAATATCTCCGTTGCATTTGGTCTGTGCTGACAGGGAGC  944
      |||||||||||||||| || |||||||||||||||||||||||| | |  
seq2  TGACTGTCTGGTAATAACTTCGTTGCATTTGGTCTGTGCTGACAAGAACT  946

seq1  TCTGTGAAGCCCTCCCTACCTCCCATG-TGGCAGCTGCCTGGGTACACCA  993
      |||||||| |||||||||||| ||||| ||||||||||||||||||||||
seq2  TCTGTGAA-CCCTCCCTACCTTCCATGTTGGCAGCTGCCTGGGTACACCA  995

seq1  CACAGACGGGGTTCTCAAGCCCTACTTGCCAGTAT  1028
      ||||||  ||| |||| ||||| ||||||| ||||
seq2  CACAGAACGGGGTCTC-AGCCCCACTTGCC-GTAT  1028