BAC Information

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BAC

Clone NameB6Ng01-045M18
Chromosome10 (Build37)3 (Build37)
Map Location 104,054,095 - 104,054,29416,962,540 - 16,963,600
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045M18.bB6Ng01-045M18.g
ACCDH871149DH871150
length9751,029
definitionDH871149|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M18, 5' end.DH871150|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,054,095 - 104,054,294)(16,962,540 - 16,963,600)
sequence
gaattctatgacaaaaccaaattcatacaatgtctttccaccaatccagc
ccttcaaaggataataaagggaaaactcaaaacaacccttagattccacc
tcacaccagtcagaatggctaagataaaaaattcaggtgacagcagatgc
tggcgaggatgtggagaaaaaggaacactcctccattgttggtgggattg
caagcttgtacaaccactctggaaatcagtctggaggttcctcagaaaat
tggacatagtactgtattttctttttaaagtcctccatcatcatcatgaa
aagtgactttatatcagtgtcttgcttttctggtgtgatggtgtatccag
gacttgctatggtaggagagtttggttctgatgatgccaagtaaccttgt
tttctgttgcttctgttcttatgcttgcctcctgccatctgattgtctca
agtgcttgctgccctcagtttatctgattggagcctgtccttcctttaat
ctcagttgattcaggactcctcagagtccagctttctctgcaatcctgtg
attccaggctcctgtgaccctgagattctgggtgtgtcagaattcttggc
agtcaagcttactctgagagtctgagatcctggtatgaccaagctcctga
gattcttgagtgctaagatcctgggcatgatccagtacctagaagtggtg
tctcctctgaggaccatggggctgtttggtgtgtttgaaaccaaggtaaa
ccagtaccgatcagaaagatcctgagcagttggtcaggcagggctcccat
gtctttgctcctgctgtcacaattggtttggaaccgatgttgtgttccac
ttatcagtgacctgaagatttcatggagcgtcctttgaggacttgtgact
gtctgccaaacccacccaaagtacctagagctggcgcagaccggagggca
attttccatttattacagcaaagtc
gaattccacgtgattcaggctcacattgcaggaaggacttatttacatga
attttatcatttttgtacagggcattttaataattgaaatgatacaagac
aaagagatgctatttgcaaaggctggaaaacagcaagtgagacatgacag
ttcaggacaacctgatggcagatgaagctgaggactcaagataagctatt
aaaattaatttgaggatttagcgaagctgctaggcacaaatttaatatat
aaagtaaaatgtgttctacatacttgaaataagcaataatagatatgaag
tttaaaatgatgcttaggaaagattaaaaaaaacattttcttggctgaaa
ctaataaaatgccactaaaagaaatgaggacatgtaaaaataaagaaaac
tcccattgctgtgtagtcagaagtcttgcagagcagtgtttcaaagatgg
tgattatttctttccaaaaagcactgtggtggacagcttttattcttttt
tcaggttatgcaaaaagaatgcactggaagtttagaaaaggctgttttct
tctaaacaaatgaagctgataaagtagcgtcccatcaaattccagttaaa
gaggcagctcaggcaaatgtagcctctactcacactgccataaatgagtt
ctaactcatttttggtgtacaaatggaagaagggagaagcagttttggta
ggtaagtggcagattatccccacttgtgaatagtacagtcagtggctatt
taggcaaccttttcagactgttgtgaaagatgggtagaaaataaattgta
gagctatcagcctttccactaagaattatcatttttaattctctgggata
ggaaagattctctaagattgagtgtagtttcatcttagttttctcgcagt
ttatacatatgtgctatatacatacattcaaatttctgatatgctgagta
ataggtcaaattttctatatgtgactactactctcatatagagccccata
caaatcgtctatgttacttcagttaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104054095_104054294
seq2: B6Ng01-045M18.b_112_307 (reverse)

seq1  AGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGG  50
      |||||||||||||||||||||| ||||| |||||| ||||||||||||||
seq2  AGTACTATGTCCAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAGTGG  50

seq1  TTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTC  100
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  TTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTTTTTCTC  100

seq1  CACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATT  150
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTTATCTTAGCCATT  150

seq1  CTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCT  200
      ||||||||||||||||||||||| ||||||||||||| |    |||||||
seq2  CTGACTGGTGTGAGGTGGAATCTAAGGGTTGTTTTGAGT----TTTCCCT  196

seq1: chr3_16962540_16963600
seq2: B6Ng01-045M18.g_68_1096

seq1  GAATTCCACGTGATTCAGGCTCACATTGCAGGAAGGACTTATTTACATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGTGATTCAGGCTCACATTGCAGGAAGGACTTATTTACATGA  50

seq1  ATTTTATCATTTTTGTACAGGGCATTTTAATAATTGAAATGATACAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCATTTTTGTACAGGGCATTTTAATAATTGAAATGATACAAGAC  100

seq1  AAAGAGATGCTATTTGCAAAGGCTGGAAAACAGCAAGTGAGACATGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATGCTATTTGCAAAGGCTGGAAAACAGCAAGTGAGACATGACAG  150

seq1  TTCAGGACAACCTGATGGCAGATGAAGCTGAGGACTCAAGATAAGCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACAACCTGATGGCAGATGAAGCTGAGGACTCAAGATAAGCTATT  200

seq1  AAAATTAATTTGAGGATTTAGCGAAGCTGCTAGGCACAAATTTAATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATTTGAGGATTTAGCGAAGCTGCTAGGCACAAATTTAATATAT  250

seq1  AAAGTAAAATGTGTTCTACATACTTGAAATAAGCAATAATAGATATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAATGTGTTCTACATACTTGAAATAAGCAATAATAGATATGAAG  300

seq1  TTTAAAATGATGCTTAGGAAAGATTAAAAAAAACATTTTCTTGGCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGATGCTTAGGAAAGATTAAAAAAAACATTTTCTTGGCTGAAA  350

seq1  CTAATAAAATGCCACTAAAAGAAATGAGGACATGTAAAAATAAAGAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAATGCCACTAAAAGAAATGAGGACATGTAAAAATAAAGAAAAC  400

seq1  TCCCATTGCTGTGTAGTCAGAAGTCTTGCAGAGCAGTGTTTCAAAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGCTGTGTAGTCAGAAGTCTTGCAGAGCAGTGTTTCAAAGATGG  450

seq1  TGATTATTTCTTTCCAAAAAGCACTGTGGTGGACAGCTTTTATTCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTTCTTTCCAAAAAGCACTGTGGTGGACAGCTTTTATTCTTTTT  500

seq1  TCAGGTTATGCAAAAAGAATGCACTGGAAGTTTAGAAAAGGCTGTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTATGCAAAAAGAATGCACTGGAAGTTTAGAAAAGGCTGTTTTCT  550

seq1  TCTAAACAAATGAAGCTGATAAAGTAGCGTCCCATCAAATTCCAGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACAAATGAAGCTGATAAAGTAGCGTCCCATCAAATTCCAGTTAAA  600

seq1  GAGGCAGCTCAGGCAAATGTAGCCTCTACTCACACTGCCATAAATGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCTCAGGCAAATGTAGCCTCTACTCACACTGCCATAAATGAGTT  650

seq1  CTAACTCATTTTTGGTGTACAAATGGAAGAAGGGAGAAGCAGTTTTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCATTTTTGGTGTACAAATGGAAGAAGGGAGAAGCAGTTTTGGTA  700

seq1  GGTAAGTGGCAGATTATCCCCACTTGTGAATAGTACAGTCAGTGGCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGGCAGATTATCCCCACTTGTGAATAGTACAGTCAGTGGCTATT  750

seq1  TAGGCAACCTCTTCAGACTGTTGTGAAAGATGGGTAG-AAATAAATTGTA  799
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  TAGGCAACCTTTTCAGACTGTTGTGAAAGATGGGTAGAAAATAAATTGTA  800

seq1  GAGCTATCAGCC-TTCCACTAAGAATTATCATTTTTAATTCTCTGGAATA  848
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  GAGCTATCAGCCTTTCCACTAAGAATTATCATTTTTAATTCTCTGGGATA  850

seq1  GGAAAGAATTCTCTAAGATTGAGTTGTAGTTTCATCTTAGTTTTTCTCGC  898
      |||||| |||||||||||||||| |||||||||||||||| |||||||||
seq2  GGAAAG-ATTCTCTAAGATTGAG-TGTAGTTTCATCTTAG-TTTTCTCGC  897

seq1  AGTTTAATTACATATGTGCTAATAATAACATACATTCAAATTTCCTGAAT  948
      ||||||  |||||||||||| |||   |||||||||||||||| ||| ||
seq2  AGTTTA--TACATATGTGCT-ATA--TACATACATTCAAATTT-CTG-AT  940

seq1  AAATTGCTGAGGTAAAATTAAGGGTCCAAAATTTTCTATAATGTGACTAA  998
      |   |||||| |||| |     ||||  ||||||||||| |||||||| |
seq2  A---TGCTGA-GTAATA-----GGTC--AAATTTTCTAT-ATGTGACT-A  977

seq1  CTACTCTCATATAGAAGCCCCCAAATACCAAAATTCGTCTATTGGTTTTA  1048
      |||||||||||||| ||||||   ||||   || |||||||    | |||
seq2  CTACTCTCATATAG-AGCCCC---ATAC---AAATCGTCTA----TGTTA  1016

seq1  CTTCAGTTAACAC  1061
      |||||||||||||
seq2  CTTCAGTTAACAC  1029