BAC Information

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BAC

Clone NameB6Ng01-045P16
Chromosome10 (Build37)
Map Location 21,938,621 - 21,939,780
singlet/doubletsinglet
Overlap geneLOC100040023
Upstream geneLOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e
Downstream geneLOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21, Eya4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045P16.bB6Ng01-045P16.g
ACCDH871276DH871277
length1,2341,134
definitionDH871276|Mus musculus domesticus DNA, BAC clone: B6Ng01-045P16, 5' end.DH871277|Mus musculus domesticus DNA, BAC clone: B6Ng01-045P16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttagggtccaataaagaaacctgtctcagtgggagtccctaact
tttctcatggtaaacttttatttggataagactgtcctttctgtcctagt
aacctctttgctgaattcctactgaatttcacggtcacactaggacattg
gaactctggtgaagacttaactatatcaggatttgatttttaaaagcact
ataataagataacactaaaggagagcgcatggatcctcctctgcattctt
ggatgacaggcgggaaacagggaggaggggatgacgaccgctctgtagta
caaggccaattggctttttagggtgggaggcagtgaagggcttgcccttc
caacggtacggtctccaacctctccccccctaataattaagtttaataag
gccacgctcaactgaggtgattaaatgattttctcatccgtagatgagtg
ggctttaaccatggcttggggggatattgacccgattcctcccgtgggta
ctgtcacgacccacacttgtggttcttggtatcttttggggaggggaggc
agagtcttagaaagatatttttgattgtaactggaactagataccaacct
ccatccaaaccgggtgtatctcacaggcaacccagaaatggtcaagctgg
actttcccctgcattaaatttctgcacccaagcagtacctgtgctgtatt
cgtatgatcacgaatcagtatgcacagttctgagtactgtgcagctccta
aaggagaattgtcaacctcagatttagcaaggcctagacaagaatatgtc
actagtaacaccacaatttgtggctcttaggctatattaggagctggagc
tcaccctcctcatctctgttatcccacagcctgaggactaaggggacctt
gcaataacagcaagggtggaaaccagagccagctaaggactagcccgtct
atcagaataaaaccaatcacttctaatatatgaaatttctgcctttctag
ccctctgtaacctaaatctcaaatcagacctaaagccacattcgtgctga
atgaaatagtagctgcctcctgttacgcttaaggggcgggatgccgccca
cttgcagtcgcttaaggtgtaattgactgtttgaagaccaaatctgaact
gaaatcctcccagctctctttggaagtccgacttatcacgactgatcagt
acctattctgcctcctaggtggaactgctgctcg
gaattctggtcctatggaaagctgccagagcccaggatagatcttaaagt
tgttgaattttcacctgttccttggatctctcattcagggagaaacagaa
caaacacacttggttatacctaaattaggtattctgttacagtcagagtt
ttaggacacagtggcgatgaagactgtaccatgagggataagttagcaga
ggatgaatagatctgggcctgaggaaatactgctagactcaatggaaaac
agttaactagagaagaggagaggagcagactcaggctatgtcacaagctg
ctgtgtagacagcagctcaccaagagagtgggccctgggccctgaggaaa
catcactggggctggggggtcatgccatggaggacactgagcccttgaca
agtttctccctgaaatctctttctgctgttcattgtctagaaaggcaggg
agataggatataaaaatagcagttgtacatcttaattgagagtaaactct
gcaactataaaaagattaacttttgctaaagtgattctaaatcagaaatt
atacccatgcacctctctgcatatcagtctctccatggaaccgtactgag
tgacaataggtcaattcccatggtcagaatttcattctgtcttaagttcc
cttctgtctcattactgctattgactgactaagcccagtcgtttgtaaca
caaactaatattagagacttttatgattatttaacactactgtgggagtt
tttattatacatgaaaagtatttctttaataagatttagaagtctgtgta
aaatgattacctttaacaaaaacgatcaggaagcattgtccaggtggtct
gtcatctctatcttcaagatcttcttataccagcacacaaagtcactttt
cattttatattgcatgacatgtcatcctgtaatgtgtccaaatttgccat
ctgtctgtatttatgagataagtctttctgtagctactcacaggaagtca
aatgtttcatgtataagataacagcgtgattccataagttttggaggttt
attcctactacacttgacctctgaactgctatgaatttatttatcattca
cctcatatcaacattagctactactttgcaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21938621_21939780
seq2: B6Ng01-045P16.g_66_1199

seq1  GAATTCTGGTCCTATGGAAAGCTGCCAGAGCCCAGGATAGATCTTAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCCTATGGAAAGCTGCCAGAGCCCAGGATAGATCTTAAAGT  50

seq1  TGTTGAATTTTCACCTGTTCCTTGGATCTCTCATTCAGGGAGAAACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATTTTCACCTGTTCCTTGGATCTCTCATTCAGGGAGAAACAGAA  100

seq1  CAAACACACTTGGTTATACCTAAATTAGGTATTCTGTTACAGTCAGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACTTGGTTATACCTAAATTAGGTATTCTGTTACAGTCAGAGTT  150

seq1  TTAGGACACAGTGGCGATGAAGACTGTACCATGAGGGATAAGTTAGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACACAGTGGCGATGAAGACTGTACCATGAGGGATAAGTTAGCAGA  200

seq1  GGATGAATAGATCTGGGCCTGAGGAAATACTGCTAGACTCAATGGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATAGATCTGGGCCTGAGGAAATACTGCTAGACTCAATGGAAAAC  250

seq1  AGTTAACTAGAGAAGAGGAGAGGAGCAGACTCAGGCTATGTCACAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTAGAGAAGAGGAGAGGAGCAGACTCAGGCTATGTCACAAGCTG  300

seq1  CTGTGTAGACAGCAGCTCACCAAGAGAGTGGGCCCTGGGCCCTGAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGACAGCAGCTCACCAAGAGAGTGGGCCCTGGGCCCTGAGGAAA  350

seq1  CATCACTGGGGCTGGGGGGTCATGCCATGGAGGACACTGAGCCCTTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGGGGCTGGGGGGTCATGCCATGGAGGACACTGAGCCCTTGACA  400

seq1  AGTTTCTCCCTGAAATCTCTTTCTGCTGTTCATTGTCTAGAAAGGCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCCCTGAAATCTCTTTCTGCTGTTCATTGTCTAGAAAGGCAGGG  450

seq1  AGATAGGATATAAAAATAGCAGTTGTACATCTTAATTGAGAGTAAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGATATAAAAATAGCAGTTGTACATCTTAATTGAGAGTAAACTCT  500

seq1  GCAACTATAAAAAGATTAACTTTTGCTAAAGTGATTCTAAATCAGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTATAAAAAGATTAACTTTTGCTAAAGTGATTCTAAATCAGAAATT  550

seq1  ATACCCATGCACCTCTCTGCATATCAGTCTCTCCATGGAACCGTACTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATGCACCTCTCTGCATATCAGTCTCTCCATGGAACCGTACTGAG  600

seq1  TGACAATAGGTCAATTCCCATGGTCAGAATTTCATTCTGTCTTAAGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAGGTCAATTCCCATGGTCAGAATTTCATTCTGTCTTAAGTTCC  650

seq1  CTTCTGTCTCATTACTGCTATTGACTGACTAAGCCCAGTCGTTTGTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTCATTACTGCTATTGACTGACTAAGCCCAGTCGTTTGTAACA  700

seq1  CAAACTAATATTAGAGACTTTTATGATTATTTAACACTACTGTGGGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAATATTAGAGACTTTTATGATTATTTAACACTACTGTGGGAGTT  750

seq1  TTTATTATACATGAAAAGTATTTCTTTAATAAGATTTAGAAGTCTGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATACATGAAAAGTATTTCTTTAATAAGATTTAGAAGTCTGTGTA  800

seq1  AAATGATTACCTTTAACAAAAACGATCAGGAAGCATTGTCCAGGTGGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTACCTTTAACAAAAACGATCAGGAAGCATTGTCCAGGTGGTCT  850

seq1  GTCATCTCTATCTTCAAGATCTTCTTATACCAGCACACAAAGTCACTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTCTATCTTCAAGATCTTCTTATACCAGCACACAAAGTCACTTTT  900

seq1  CATTTTAATATTGCATGACATGTCATCCTGTAAATGTGTCCAAATTTGCC  950
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  CATTTT-ATATTGCATGACATGTCATCCTGT-AATGTGTCCAAATTTGCC  948

seq1  ATCTGTCCTGTATTTATGAAGATAAAGTCTTTCCTGTTAGCTACTCAACA  1000
      |||||| ||||||||||| |||| |||||||| ||| ||||||||| |||
seq2  ATCTGT-CTGTATTTATG-AGAT-AAGTCTTT-CTG-TAGCTACTC-ACA  992

seq1  GGAAGTCAAAATGTTTCAATGTTATAAAGATAACAGCGTGGATTTCCATA  1050
      ||||||| ||||||||| ||| ||| ||||||||||||||   |||||| 
seq2  GGAAGTC-AAATGTTTC-ATG-TAT-AAGATAACAGCGTG--ATTCCAT-  1035

seq1  AAGTTTTTGGAAGTTTTATTCACTACATACACATGGACTCTGAAAACTGC  1100
      |||||||  | || ||||||| |||| ||||| ||  |||||  ||||||
seq2  AAGTTTT--GGAGGTTTATTC-CTAC-TACACTTGACCTCTG--AACTGC  1079

seq1  TATG-ATTTATATTATCATTTCACCTCATTACAACATTAGCTATCTACTT  1149
      |||| |||||| |||||| ||||||||||  |||||||||||| ||||||
seq2  TATGAATTTAT-TTATCA-TTCACCTCATATCAACATTAGCTA-CTACTT  1126

seq1  TGCGAAAAGAG  1160
      |||   |||||
seq2  TGC---AAGAG  1134