BAC Information

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BAC

Clone NameB6Ng01-046E04
Chromosome10 (Build37)
Map Location 61,743,649 - 61,886,311
singlet/doubletdoublet
Overlap geneHk1, 2210417K05Rik, Hkdc1
Upstream genePrf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2
Downstream geneSupv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046E04.bB6Ng01-046E04.g
ACCDH871480DH871481
length9291,099
definitionDH871480|Mus musculus domesticus DNA, BAC clone: B6Ng01-046E04, 5' end.DH871481|Mus musculus domesticus DNA, BAC clone: B6Ng01-046E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,885,379 - 61,886,311)(61,743,649 - 61,744,770)
sequence
gaattcactaaccagccagtggctgggaggactgcaaaaggttgtgttcc
catgtggcagatccttctcataccacgcatggtgagagcagagggcaaga
aaccaggtgtctcaatggtagtacatccttcctgcgcagcactccagcag
ggcctggtggcttccattcttaatgcccccacctcccaacacacacacac
acacacacacacacacacacacagagagagagagagagagagagcagccc
caagctactaaaggctgtctggcttaccactgtggagtattgattacttc
tcattagcttatctgccacagtagaggaattgtctcagcatttttttttt
tttttgaatctgcaggaccaggacactgcttagccttagttaagatggtg
cctcagaagccaggcagcagtggcacacagctttaatcccagtactcggg
aggcagaggcaggtggatctctgagttcgaggccagcctggtccacagcc
agagcagccagttttacacagtactccttataacacgaactccctctcaa
cagcaaaaggaattaaggcactggggcaggggtggggagggcagctctag
agtgcttacctagcttctatgacgtcctgggttcaagccccagcaggaaa
ggaaaaagtatttaagagacttttattggaaaagatacagggagccaata
ccagttgaaacccatctggaaaacaaaaaaacaaaacctaagacgctgcc
taagataccaggagtctacagtcctgtggcctcgctgagaagagggattc
aggaactgggatttagttctaaattggctctgttttgctccccccacccc
accccccacttctacaagcttttcttaactgagtggtcttagagcacagg
ccttaatgtgcactagcacagatttctcg
gaattctagaggaggtaaaaatggtacccaagatcaaccattcccccact
aaagactgagctgttgggtttgtaccacagagggaacgccaacatcccct
tcctggagaagagacccttttacggtacttacccacgatgagtccaatct
cacaagaaggttcttcataagcacaagtcatcatggtgcccacggtgtcg
ttgaccacagccaccacatccaggtcaaattcctttgaaaagaaggggac
agggatgtagggaagggtcagctgggcctggcttgaatccggctagtcca
ggctgtggactggacacttctgggaagcagggttggtttcctgactgagt
tcgataacttgacacagagtagcaatactgtctataagtctattccagcc
aacagggccatccatgcccgacggtgcttgcactctgaaatgcctggcag
ttcccggctgtatgggccctcaggaactttccattgttccatccctatga
gtcatgattttacctctctttgggtgtaccatccttttcacatgtgcaca
cacacacacacacacacacacacacacacacacagcacatgtgtgtaggt
caaatgataaaccacaggaaaggattctctcactccaccacatgggtcct
agaaactaaactcaggccctcgggcttggtggcaggctgtcaagccagct
caccagcccatattaccatcccttaatgatacaaaactgacaaatgtcac
ttgaccgcctggcagtgactggggcgggcgtggggacagggacacttcca
aatcgcatgctcctgtggtgttccaattcttcacaaaaaaagcaagctta
atttttgtaccctcccccgccccacgcaaggcaaaaatatctaaaaggat
aaagttactctctccttttacagcatccctcagtaagtgctacatcggac
caacacagtcgtgcttgaatccctttgtccacgtgatcaagattcctaaa
acagaaagcaccaagagtttaggtgagtactcagtccactttcagtagaa
aaattgtacacctactccggcaataaaccacagaggctgtaaagcaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61885379_61886311
seq2: B6Ng01-046E04.b_45_973 (reverse)

seq1  CGAGAAAATCTTGTTGCTAAGTGACACACTAAGGCCTGTGCTCTAAGACC  50
      |||| ||||||   |||| |||| |||| |||||||||||||||||||||
seq2  CGAG-AAATCT--GTGCT-AGTG-CACATTAAGGCCTGTGCTCTAAGACC  45

seq1  ACTCAGCTAAGGAAAAGCTTGTGAGAAGTTGGGGGTGGGGTGGGGGGAGC  100
      |||||| ||| ||||||||||| |||||| ||||||||||||||||||||
seq2  ACTCAGTTAA-GAAAAGCTTGT-AGAAGTGGGGGGTGGGGTGGGGGGAGC  93

seq1  AAAACAGAGCCAATTTATGAACTAAATCCCAGTTCCAGAATTCCTCTTCT  150
      ||||||||||||||||| |||||||||||||||||| |||| ||||||||
seq2  AAAACAGAGCCAATTTA-GAACTAAATCCCAGTTCCTGAATCCCTCTTCT  142

seq1  CAGCGAGGCAACAGGACTGTAGACTCCTGGTATCCTAGGCAGCGTCTTTG  200
      ||||||||| |||||||||||||||||||||||| ||||||||||||| |
seq2  CAGCGAGGCCACAGGACTGTAGACTCCTGGTATCTTAGGCAGCGTCTTAG  192

seq1  GTTTTGTTTTTT--GTTTCCAGATGGGTTTC-ACTGGTATTGGCTCCCTG  247
      ||||||||||||   |||||||||||||||| ||||||||||||||||||
seq2  GTTTTGTTTTTTTGTTTTCCAGATGGGTTTCAACTGGTATTGGCTCCCTG  242

seq1  TATCTTTTCCAAT-AAAGTCTCTTAAATACTTTTTCCTTTCCTGCTGGGG  296
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTCCAATAAAAGTCTCTTAAATACTTTTTCCTTTCCTGCTGGGG  292

seq1  CTTGAACCCAGGACGTCATAGAAGCTAGGTAAGCACTCTAGAGCTGCCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCCAGGACGTCATAGAAGCTAGGTAAGCACTCTAGAGCTGCCCT  342

seq1  CCCCACCCCTGCCCCAGTGCCTTAATTCCTTTTGCTGTTGAGAGGGAGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCTGCCCCAGTGCCTTAATTCCTTTTGCTGTTGAGAGGGAGTT  392

seq1  CGTGTTATAAGGAGTACTGTGTAAAACTGGCTGCTCTGGCTGTGGACCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTATAAGGAGTACTGTGTAAAACTGGCTGCTCTGGCTGTGGACCAG  442

seq1  GCTGGCCTCGAACTCAGAGATCCACCTGCCTCTGCCTCCCGAGTACTGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCGAACTCAGAGATCCACCTGCCTCTGCCTCCCGAGTACTGGG  492

seq1  ATTAAAGCTGTGTGCCACTGCTGCCTGGCTTCTGAGGCACCATCTTAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCTGTGTGCCACTGCTGCCTGGCTTCTGAGGCACCATCTTAACT  542

seq1  AAGGCTAAGCAGTGTCCTGGTCCTGCAGATTCAAAAAAAAAAAAAAATGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAAGCAGTGTCCTGGTCCTGCAGATTCAAAAAAAAAAAAAAATGC  592

seq1  TGAGACAATTCCTCTACTGTGGCAGATAAGCTAATGAGAAGTAATCAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAATTCCTCTACTGTGGCAGATAAGCTAATGAGAAGTAATCAATA  642

seq1  CTCCACAGTGGTAAGCCAGACAGCCTTTAGTAGCTTGGGGCTGCTCTCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGTGGTAAGCCAGACAGCCTTTAGTAGCTTGGGGCTGCTCTCTC  692

seq1  TCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT  742

seq1  GGGAGGTGGGGGCATTAAGAATGGAAGCCACCAGGCCCTGCTGGAGTGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGGGGGCATTAAGAATGGAAGCCACCAGGCCCTGCTGGAGTGCT  792

seq1  GCGCAGGAAGGATGTACTACCATTGAGACACCTGGTTTCTTGCCCTCTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGAAGGATGTACTACCATTGAGACACCTGGTTTCTTGCCCTCTGC  842

seq1  TCTCACCATGCGTGGTATGAGAAGGATCTGCCACATGGGAACACAACCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCATGCGTGGTATGAGAAGGATCTGCCACATGGGAACACAACCTT  892

seq1  TTGCAGTCCTCCCAGCCACTGGCTGGTTAGTGAATTC  933
      |||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTCCTCCCAGCCACTGGCTGGTTAGTGAATTC  929

seq1: chr10_61743649_61744770
seq2: B6Ng01-046E04.g_66_1164

seq1  GAATTCTAGAGGAGGTAAAAATGGTACCCAAGATCAACCATTCCCCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGGAGGTAAAAATGGTACCCAAGATCAACCATTCCCCCACT  50

seq1  AAAGACTGAGCTGTTGGGTTTGTACCACAGAGGGAACGCCAACATCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGAGCTGTTGGGTTTGTACCACAGAGGGAACGCCAACATCCCCT  100

seq1  TCCTGGAGAAGAGACCCTTTTACGGTACTTACCCACGATGAGTCCAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGAAGAGACCCTTTTACGGTACTTACCCACGATGAGTCCAATCT  150

seq1  CACAAGAAGGTTCTTCATAAGCACAAGTCATCATGGTGCCCACGGTGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAGGTTCTTCATAAGCACAAGTCATCATGGTGCCCACGGTGTCG  200

seq1  TTGACCACAGCCACCACATCCAGGTCAAATTCCTTTGAAAAGAAGGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCACAGCCACCACATCCAGGTCAAATTCCTTTGAAAAGAAGGGGAC  250

seq1  AGGGATGTAGGGAAGGGTCAGCTGGGCCTGGCTTGAATCCGGCTAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTAGGGAAGGGTCAGCTGGGCCTGGCTTGAATCCGGCTAGTCCA  300

seq1  GGCTGTGGACTGGACACTTCTGGGAAGCAGGGTTGGTTTCCTGACTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGACTGGACACTTCTGGGAAGCAGGGTTGGTTTCCTGACTGAGT  350

seq1  TCGATAACTTGACACAGAGTAGCAATACTGTCTATAAGTCTATTCCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATAACTTGACACAGAGTAGCAATACTGTCTATAAGTCTATTCCAGCC  400

seq1  AACAGGGCCATCCATGCCCGACGGTGCTTGCACTCTGAAATGCCTGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCCATCCATGCCCGACGGTGCTTGCACTCTGAAATGCCTGGCAG  450

seq1  TTCCCGGCTGTATGGGCCCTCAGGAACTTTCCATTGTTCCATCCCTATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGGCTGTATGGGCCCTCAGGAACTTTCCATTGTTCCATCCCTATGA  500

seq1  GTCATGATTTTACCTCTCTTTGGGTGTACCATCCTTTTCACATGTGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGATTTTACCTCTCTTTGGGTGTACCATCCTTTTCACATGTGCACA  550

seq1  CACACACACACACACACACACACACACACACACAGCACATGTGTGTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAGCACATGTGTGTAGGT  600

seq1  CAAATGATAAACCACAGGAAAGGATTCTCTCACTCCACCACATGGGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATAAACCACAGGAAAGGATTCTCTCACTCCACCACATGGGTCCT  650

seq1  AGAAACTAAACTCAGGCCCTCGGGCTTGGTGGCAGGCTGTCAAGCCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAAACTCAGGCCCTCGGGCTTGGTGGCAGGCTGTCAAGCCAGCT  700

seq1  CACCAGCCCATATTACCATCCCTTAATGATACAAAACTGACAAATGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCCATATTACCATCCCTTAATGATACAAAACTGACAAATGTCAC  750

seq1  TTGACCGCCTGGCAGTGACTGGGGCGGGCGTGGGGACAGGGACACTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCGCCTGGCAGTGACTGGGGCGGGCGTGGGGACAGGGACACTTCCA  800

seq1  AATCGCATGCTCCTGTGGTGTTCCAATTCTTCACAAAAAAAGCAAGCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCATGCTCCTGTGGTGTTCCAATTCTTCACAAAAAAAGCAAGCTTA  850

seq1  ATTTTTGTACCCTCCCCCGCCCCACGCAAGGCAAAAATTATCTTAAAAGG  900
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  ATTTTTGTACCCTCCCCCGCCCCACGCAAGGCAAAAA-TATC-TAAAAGG  898

seq1  ATTAAGTTACCTCTCTCCTTTTTACAGCATCCCTCAGTAAAGTGGCTACA  950
      || |||||| |||||||| ||||||||||||||||||| |||| ||||||
seq2  ATAAAGTTA-CTCTCTCC-TTTTACAGCATCCCTCAGT-AAGT-GCTACA  944

seq1  TCGTGACCCACACAGTCGGTGGCTTTGAATCCCTTTGTCCACGTGATCAA  1000
      ||| |||| |||||||| |||   ||||||||||||||||||||||||||
seq2  TCG-GACCAACACAGTC-GTG--CTTGAATCCCTTTGTCCACGTGATCAA  990

seq1  GATTCCCTAAAACAGGAAAGGCACCCAAAGAGTTTAGGTGAGTAACCTTC  1050
      |||| ||||||||||  || |||||  |||||||||||||||||    ||
seq2  GATT-CCTAAAACAG--AAAGCACC--AAGAGTTTAGGTGAGTA---CTC  1032

seq1  AGGTCACTTTTCAGTCAGGAGAATGTGACACCCTACCTCCCGGGCAAT-A  1099
      ||  ||| ||||||| || | |||   ||| |||| ||||  |||||| |
seq2  AGTCCAC-TTTCAGT-AGAAAAATTGTACA-CCTA-CTCC--GGCAATAA  1076

seq1  ACCACAGAGGCTGTAAAGCAAGA  1122
      |||||||||||||||||||||||
seq2  ACCACAGAGGCTGTAAAGCAAGA  1099