BAC Information

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BAC

Clone NameB6Ng01-046H08
Chromosome10 (Build37)
Map Location 66,915,307 - 67,050,598
singlet/doubletdoublet
Overlap geneEgr2, Gm237, LOC100040081
Upstream geneReep3, Jmjd1c, Nrbf2
Downstream geneLOC100039618, Zfp365, Plekhk1, Arid5b, LOC100040136, 1700040L02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046H08.bB6Ng01-046H08.g
ACCDH871618DH871619
length1,0761,067
definitionDH871618|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H08, 5' end.DH871619|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,049,499 - 67,050,598)(66,915,307 - 66,916,388)
sequence
gaattctacgtgcaccagctttcaactctgtctccaaccttgcttctcct
cagctctctcctagtgatgagacaatcacacagatcaatatgaagacaga
ccctctgccccaaatctctgtgttactattccaggtctcaacacacgggg
gcaatggaaattgccctggaagatatgccagtatataactagagataaca
tggaattgaccagacccataaactcacatcccattatctccatactaaac
ggaccctgagttgtgctcccgtacggcagacgaaggccaagccagtgagt
gcaggcttccttacaccacctgacgtggagattggtactgcgggaagcca
atgaagctgtgaccttagctacccccagctaaagcatccagaagctttct
taaaggctaaagttttgctaagcctagactggccccttaagtccacagga
tcatggtttggggggtcagattgcaaacttcatcaggaaaccctgaattg
gcttcatgattatttctgttggggaaaaaaatcaacttttaataatgctt
tcatcggggggaaaaaaatcttgaactgattccaataatctcagtgaatc
accatgaatccctccgtctctccctgaatgtttctctccccccctcttta
ctcccccatctctgtatatttgtgtgtgtgtgtgattgtccacaggaggc
aagtctgcaccagctactctgaggttcataagaaatacaggccaatcgcc
aataagcccagcagggcctcaaacaggaacattaaattgacatatgaaac
ttggaattttgaaacaattcagatgtactaaacagaaaaagaatgtggga
gactatcattttgaagggctagaacgcaaataaaagtgtcccggggtgag
tccacatgtaagaaatgggatgcacaaacctcaaacgaggacagaggtct
gtctactgtcagctcagtcccatcgcgtagctcactggcacatagcagca
ctacatctgggctgatgaaaacagcagaagtaggagaagagatgtttgct
gttccttgcctggtaccacaggtcag
gaattcaaccttgggtgtcatttctcagaagtcatcctccttgttttctg
gaggcaggattttttactgggacctggagttttatttgttagcctattct
ggctggccagaggttcctggcatctacctgtctccactctcccagcactg
ggatcataggcatgtgctaccacacttatggaattcagagtcccacacag
tctgttccaaaagaagccagctttggccacccaccctcaataagctaaaa
gagtcaagtgaataataaaacgctgaaaagaatttatttaaccgtgccac
atcgggaaggcagacagagacccagtgacccccctagttcattttttgag
gtcctgaagtaaagttaaaacattgagagaggactaggaatacaagtgtt
ccctgtcaaggtgtggttctacccaccattaacccatgattgtctctgca
aggttatgtctcaatcctgattgaagagtttctgagaggagttctttgag
cccgttgttctaatggtctgacagccataaagcctcttcatgacacatgc
ctctctgccaggcagggtggatacagcattggacattttccatgggcgct
aactctcagacacagctcatatgcctgcaaagttgcacttcactacctga
gccttttcctcagaccccgtagaccgtattttcttccattcttcaattgt
tggacactctgtgaaccgtgtgacagtaaacactcctcaaagatcactga
gatccgttcacttggagtcctttcagtggcacccagaagtggtagagtta
ggtcctgtagttacagttatgtttagtttgtgggtttgttttgttatgag
aacctgaggtctcacagcttcctaactttccaggaagctttcctgaacca
gtataatttttgccttcattaaattgaaatgataggttgtaatgacatcg
taggaacaatgtttattcatttgtttatgtgtgagtatatgcatgactgt
gcacataggtggtgtgtcattcagggagctggctgaacctgaagaccctc
cacttcccagtgctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_67049499_67050598
seq2: B6Ng01-046H08.b_47_1122 (reverse)

seq1  CTGACCTGTGGTTTACCCAAGGCAAAGGGAAACCAGGCAAACCATCCTCC  50
      |||||||||||  ||||  ||||||  ||||  || ||||| ||| ||| 
seq2  CTGACCTGTGG--TACC--AGGCAA--GGAA--CA-GCAAA-CAT-CTC-  38

seq1  TTTCTCCCTACTTCCTGCCTTGTTTTCATTCAAGCCCCAGATGTTAGTGC  100
       |||| ||||||| ||||  |||||||| |||   |||||||| ||||||
seq2  -TTCT-CCTACTT-CTGC--TGTTTTCA-TCA--GCCCAGATG-TAGTGC  79

seq1  TTGCTATGTGCCCAGTGAGCTACGCGATGGGACTGGAGCTGACAGTAGAC  150
       ||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  -TGCTATGTG-CCAGTGAGCTACGCGATGGGACT-GAGCTGACAGTAGAC  126

seq1  AGAACCTCTGTCCTCGTTTGAGGTTTGTGCATCCCATTTCTTACATGTGG  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-ACCTCTGTCCTCGTTTGAGGTTTGTGCATCCCATTTCTTACATGTGG  175

seq1  ACTCACCCC-GGACACTTTTATTTGCGTTCTAGCCCTTCAAAATGATAGT  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCCCGGGACACTTTTATTTGCGTTCTAGCCCTTCAAAATGATAGT  225

seq1  CTCCCACATTCTTTTTCTGTTTAGTACATCTGAATTGTTTCAAAATTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACATTCTTTTTCTGTTTAGTACATCTGAATTGTTTCAAAATTCCA  275

seq1  AGTTTCATATGTCAATTTAATGTTCCTGTTTGAGGCCCTGCTGGGCTTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATATGTCAATTTAATGTTCCTGTTTGAGGCCCTGCTGGGCTTAT  325

seq1  TGGCGATTGGCCTGTATTTCTTATGAACCTCAGAGTAGCTGGTGCAGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGATTGGCCTGTATTTCTTATGAACCTCAGAGTAGCTGGTGCAGACT  375

seq1  TGCCTCCTGTGGACAATCACACACACACACAAATATACAGAGATGGGGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTGTGGACAATCACACACACACACAAATATACAGAGATGGGGGA  425

seq1  GTAAAGAGGGGGGGAGAGAAACATTCAGGGAGAGACGGAGGGATTCATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGGGGGGGAGAGAAACATTCAGGGAGAGACGGAGGGATTCATGG  475

seq1  TGATTCACTGAGATTATTGGAATCAGTTCAAGATTTTTTTCCCCCCGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACTGAGATTATTGGAATCAGTTCAAGATTTTTTTCCCCCCGATG  525

seq1  AAAGCATTATTAAAAGTTGATTTTTTTCCCCAACAGAAATAATCATGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTATTAAAAGTTGATTTTTTTCCCCAACAGAAATAATCATGAAG  575

seq1  CCAATTCAGGGTTTCCTGATGAAGTTTGCAATCTGACCCCCCAAACCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCAGGGTTTCCTGATGAAGTTTGCAATCTGACCCCCCAAACCATG  625

seq1  ATCCTGTGGACTTAAGGGGCCAGTCTAGGCTTAGCAAAACTTTAGCCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGGACTTAAGGGGCCAGTCTAGGCTTAGCAAAACTTTAGCCTTT  675

seq1  AAGAAAGCTTCTGGATGCTTTAGCTGGGGGTAGCTAAGGTCACAGCTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCTTCTGGATGCTTTAGCTGGGGGTAGCTAAGGTCACAGCTTCA  725

seq1  TTGGCTTCCCGCAGTACCAATCTCCACGTCAGGTGGTGTAAGGAAGCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCCCGCAGTACCAATCTCCACGTCAGGTGGTGTAAGGAAGCCTG  775

seq1  CACTCACTGGCTTGGCCTTCGTCTGCCGTACGGGAGCACAACTCAGGGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTGGCTTGGCCTTCGTCTGCCGTACGGGAGCACAACTCAGGGTC  825

seq1  CGTTTAGTATGGAGATAATGGGATGTGAGTTTATGGGTCTGGTCAATTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAGTATGGAGATAATGGGATGTGAGTTTATGGGTCTGGTCAATTCC  875

seq1  ATGTTATCTCTAGTTATATACTGGCATATCTTCCAGGGCAATTTCCATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATCTCTAGTTATATACTGGCATATCTTCCAGGGCAATTTCCATTG  925

seq1  CCCCCGTGTGTTGAGACCTGGAATAGTAACACAGAGATTTGGGGCAGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGTGTGTTGAGACCTGGAATAGTAACACAGAGATTTGGGGCAGAGG  975

seq1  GTCTGTCTTCATATTGATCTGTGTGATTGTCTCATCACTAGGAGAGAGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTTCATATTGATCTGTGTGATTGTCTCATCACTAGGAGAGAGCT  1025

seq1  GAGGAGAAGCAAGGTTGGAGACAGAGTTGAAAGCTGGTGCACGTAGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAGCAAGGTTGGAGACAGAGTTGAAAGCTGGTGCACGTAGAATT  1075

seq1  C  1100
      |
seq2  C  1076

seq1: chr10_66915307_66916388
seq2: B6Ng01-046H08.g_65_1131

seq1  GAATTCAACCTTGGGTGTCATTTCTCAGAAGTCATCCTCCTTGTTTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTGGGTGTCATTTCTCAGAAGTCATCCTCCTTGTTTTCTG  50

seq1  GAGGCAGGATTTTTTACTGGGACCTGGAGTTTTATTTGTTAGCCTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGATTTTTTACTGGGACCTGGAGTTTTATTTGTTAGCCTATTCT  100

seq1  GGCTGGCCAGAGGTTCCTGGCATCTACCTGTCTCCACTCTCCCAGCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCAGAGGTTCCTGGCATCTACCTGTCTCCACTCTCCCAGCACTG  150

seq1  GGATCATAGGCATGTGCTACCACACTTATGGAATTCAGAGTCCCACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATAGGCATGTGCTACCACACTTATGGAATTCAGAGTCCCACACAG  200

seq1  TCTGTTCCAAAAGAAGCCAGCTTTGGCCACCCACCCTCAATAAGCTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCAAAAGAAGCCAGCTTTGGCCACCCACCCTCAATAAGCTAAAA  250

seq1  GAGTCAAGTGAATAATAAAACGCTGAAAAGAATTTATTTAACCGTGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGTGAATAATAAAACGCTGAAAAGAATTTATTTAACCGTGCCAC  300

seq1  ATCGGGAAGGCAGACAGAGACCCAGTGACCCCCCTAGTTCATTTTTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGAAGGCAGACAGAGACCCAGTGACCCCCCTAGTTCATTTTTTGAG  350

seq1  GTCCTGAAGTAAAGTTAAAACATTGAGAGAGGACTAGGAATACAAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAAGTAAAGTTAAAACATTGAGAGAGGACTAGGAATACAAGTGTT  400

seq1  CCCTGTCAAGGTGTGGTTCTACCCACCATTAACCCATGATTGTCTCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCAAGGTGTGGTTCTACCCACCATTAACCCATGATTGTCTCTGCA  450

seq1  AGGTTATGTCTCAATCCTGATTGAAGAGTTTCTGAGAGGAGTTCTTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGTCTCAATCCTGATTGAAGAGTTTCTGAGAGGAGTTCTTTGAG  500

seq1  CCCGTTGTTCTAATGGTCTGACAGCCATAAAGCCTCTTCATGACACATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTGTTCTAATGGTCTGACAGCCATAAAGCCTCTTCATGACACATGC  550

seq1  CTCTCTGCCAGGCAGGGTGGATACAGCATTGGACATTTTCCATGGGCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCCAGGCAGGGTGGATACAGCATTGGACATTTTCCATGGGCGCT  600

seq1  AACTCTCAGACACAGCTCATATGCCTGCAAAGTTGCACTTCACTACCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAGACACAGCTCATATGCCTGCAAAGTTGCACTTCACTACCTGA  650

seq1  GCCTTTTCCTCAGACCCCGTAGACCGTATTTTCTTCCATTCTTCAATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCCTCAGACCCCGTAGACCGTATTTTCTTCCATTCTTCAATTGT  700

seq1  TGGACACTCTGTGAACCGTGTGACAGTAAACACTCCTCAAAGATCACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTCTGTGAACCGTGTGACAGTAAACACTCCTCAAAGATCACTGA  750

seq1  GATCCGTTCACTTGGAGTCCTTTCAGTGGCACCCAGAAGTGGTAGAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCGTTCACTTGGAGTCCTTTCAGTGGCACCCAGAAGTGGTAGAGTTA  800

seq1  GGTCCTGTAGTTACAGTTATGTTTAGTTTGTGGGTTTGTTTTGTTATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTCCTGTAGTTACAGTTATGTTTAGTTTGTGGGTTTGTTTTGTTATGA-  849

seq1  GAACCTGAGGTCTCACAGCTTCCTAACTTCCCAGGAAGCCTTCCTGAACC  900
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  GAACCTGAGGTCTCACAGCTTCCTAACTTTCCAGGAAGCTTTCCTGAACC  899

seq1  AGTTATAATTTTTGCCTTCATTAAATTGAAATGATAAGGTTGTTAATGAC  950
      || |||||||||||||||||||||||||||||||| |||||| |||||||
seq2  AG-TATAATTTTTGCCTTCATTAAATTGAAATGAT-AGGTTG-TAATGAC  946

seq1  ATCGTAGGAACAAATGTTTATTCATTTGTTTATGTGTGAGTTATATGCAT  1000
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  ATCGTAGGAAC-AATGTTTATTCATTTGTTTATGTGTGAG-TATATGCAT  994

seq1  GACTGTGCACATAGGTGTGTGTGTCCATTTCAGTGAGCCTGGCTGAACAC  1050
      ||||||||||||||||| |||||||   ||||| ||| |||||||||| |
seq2  GACTGTGCACATAGGTG-GTGTGTC--ATTCAGGGAG-CTGGCTGAAC-C  1039

seq1  TGAGCCCCCCTCCCACTTCCCCCAGTGCTGGG  1082
      |||   |||   ||||||  ||||||||||||
seq2  TGAAGACCC--TCCACTT--CCCAGTGCTGGG  1067