BAC Information

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BAC

Clone NameB6Ng01-046H12
Chromosome10 (Build37)
Map Location 103,115,576 - 103,235,018
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046H12.bB6Ng01-046H12.g
ACCDH871626DH871627
length1,0551,106
definitionDH871626|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H12, 5' end.DH871627|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,233,950 - 103,235,018)(103,115,576 - 103,116,534)
sequence
gaattcttaggtctatctctggaggatgcttcaattttttttttgctcct
ttaatttgtttgtttgtttgtttgttttagttttttgtttgtttactttt
ggggttttggttttctttattgtttattgttttgttttatcttatgttct
taggaaagattttttttttttaaagcacaggctatttgtcttccacattg
tttttatctctctgtctcttttcctcttcctcttcctctccctccccttc
cctcctcaccagtgggcatagtcatatgtctgtttatagaggtatgagtt
tggaactttgagtgatgacattagtattattggttttgtttgttttttgc
tggcttttttttctttttctttttttttttttttttttgacagggcctca
gtatataactccaactgtcctggaacttgctatgaaaaccatattgattg
aaggccagaatttgctcactagaatccacactgtggaaggagggaactga
cctctgtatcaagttctccaatgttcatacatatgccaagatatgtacac
gtaaggacacccacgaataaatgtaataactgttttcttccaaaaagtgg
atagtcaattttattattctgtcttaaatggaaatataccctattttctt
cactgatggtgatactattttggggtctttcataaatgattcttattata
ctctagatatttcattctgtattttcattattgtgaaaaatcattatgaa
agtgtgttgaactctgccaagagttttgtttaattttcttatatatgcta
aagtgttttttaaatttttttattttcattctgttgctgcaatataccac
agcttcattctggctaacttgttcatattagcaaactggtatctcaggaa
aaaaaaaaaagcttacttagtgatgcctacttagatttgaatagagattc
aatatcttatcaatgttttttacaatcccccactaagggttgtactcagt
gtaagtgaaatctgtgcctcttgatatagggttaataacttctctgaggc
ttagt
gaattcatttgttcaacttctctggtgtgtccataagatactattttctt
ctggccattcactgcctttgaatcttacagtaattctcctgaaatgattc
ctgaccctttcagtaaagtgctataatacttatgttacctttgaagctgg
gaattctcccatttcttattcttatattaccttctattgttactactgat
taacagggttaatcagtatctgttacaagcagaaggctctctggtaaatt
ttgagaaatgctctgatcaatgggagtaaaataaattattaggagttggt
ttaatactgtatcattttgtcattataatagtaatattatgacctataac
ttattcgaccataggttcttaatctgatcatggtgttaggtattgggttc
attgtttgagggaggagttacatataacccaaaagtgattggttactccc
aagatgtctacactactatgtaccagtggccatgtactggcaggcaagtc
atcatgaaaccctgcagaatccacttttcccttaactgtgaaaatgtgtc
agtaggaatagagctttcaggtgtataccagtttaattttgccatgttat
atgaccagagtatgtgctgtcttcagtaacagggtcttactgccacattc
tgggatgatatccaaccatactgaaatttccttgtgcgactcaagttctg
tgagatattattgtcgaaaaccttcaaactaagtagtaatgcctttttaa
caaaattgtgcgtgtctgtgcatatatatatatatatatatatgatatat
agatctcttttatctttaaacccatatagttgaatgaaatgtattagaaa
atacatttttgctttacatcatgaatctttaatttgttttcaatgatcaa
tttcagtatttatacagcaagcttctctttataaataaaaagtgaacatg
ttatttagaagaaactagttaacgtggagtttcgtgttaagaagaagttt
aaggacgttattcttgtaagtacttatttttcataaccttattaacttcc
gcctgagggaagtgaaatggaaatggattatttccggtattgtgcagata
cttagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103233950_103235018
seq2: B6Ng01-046H12.b_45_1099 (reverse)

seq1  ACTAAGCCTCAGAGATGTTAATTAACACCTATATCAAAGAGGCACAGATT  50
      ||||||||||||||| ||| |||||| |||||||| ||||||||||||||
seq2  ACTAAGCCTCAGAGAAGTT-ATTAAC-CCTATATC-AAGAGGCACAGATT  47

seq1  TCACTTACACTGAGTACAAACCCTAGTGGTGGAATTGTAGAAAACATTTT  100
      ||||||||||||||||||| || |||||| || |||||| ||||||  ||
seq2  TCACTTACACTGAGTACAACCCTTAGTGG-GGGATTGTAAAAAACA--TT  94

seq1  GATAGGATATTTGAAATCTCTATTCAAATCTAAGTAGGCATTCACTAAAG  150
      |||| ||||||   |||||||||||||||||||||||||| ||||| |||
seq2  GATAAGATATT--GAATCTCTATTCAAATCTAAGTAGGCA-TCACT-AAG  140

seq1  TAAGCTTTTTTTTTTTTTTCCCTGAGATACCAGTTTTGCTAATATGAACA  200
      |||||||||||||||||   ||||||||||||| ||||||||||||||||
seq2  TAAGCTTTTTTTTTTTT---CCTGAGATACCAG-TTTGCTAATATGAACA  186

seq1  AGTTAGCCAGAATGAAGCTGTGGTATATTGCAGCAACAGAATGAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCCAGAATGAAGCTGTGGTATATTGCAGCAACAGAATGAAAATAA  236

seq1  AAAAATTTAAAAAACACTTTAGCATATATAAGAAAATTAAACAAAACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAAAAAACACTTTAGCATATATAAGAAAATTAAACAAAACTCT  286

seq1  TGGCAGAGTTCAACACACTTTCATAATGATTTTTCACAATAATGAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGTTCAACACACTTTCATAATGATTTTTCACAATAATGAAAATA  336

seq1  CAGAATGAAATATCTAGAGTATAATAAGAATCATTTATGAAAGACCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAAATATCTAGAGTATAATAAGAATCATTTATGAAAGACCCCAA  386

seq1  AATAGTATCACCATCAGTGAAGAAAATAGGGTATATTTCCATTTAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATCACCATCAGTGAAGAAAATAGGGTATATTTCCATTTAAGACA  436

seq1  GAATAATAAAATTGACTATCCACTTTTTGGAAGAAAACAGTTATTACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATAAAATTGACTATCCACTTTTTGGAAGAAAACAGTTATTACATT  486

seq1  TATTCGTGGGTGTCCTTACGTGTACATATCTTGGCATATGTATGAACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGTGGGTGTCCTTACGTGTACATATCTTGGCATATGTATGAACATT  536

seq1  GGAGAACTTGATACAGAGGTCAGTTCCCTCCTTCCACAGTGTGGATTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACTTGATACAGAGGTCAGTTCCCTCCTTCCACAGTGTGGATTCTA  586

seq1  GTGAGCAAATTCTGGCCTTCAATCAATATGGTTTTCATAGCAAGTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAATTCTGGCCTTCAATCAATATGGTTTTCATAGCAAGTTCCAG  636

seq1  GACAGTTGGAGTTATATACTGAGGCCCTGTCAAAAAAAAAAAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTGGAGTTATATACTGAGGCCCTGTCAAAAAAAAAAAAAAAAAAA  686

seq1  GAAAAAGAAAAAAAAGCCAGCAAAAAACAAACAAAACCAATAATACTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAAAAAAGCCAGCAAAAAACAAACAAAACCAATAATACTAAT  736

seq1  GTCATCACTCAAAGTTCCAAACTCATACCTCTATAAACAGACATATGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCACTCAAAGTTCCAAACTCATACCTCTATAAACAGACATATGACT  786

seq1  ATGCCCACTGGTGAGGAGGGAAGGGGAGGGAGAGGAAGAGGAAGAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCACTGGTGAGGAGGGAAGGGGAGGGAGAGGAAGAGGAAGAGGAAA  836

seq1  AGAGACAGAGAGATAAAAACAATGTGGAAGACAAATAGCCTGTGCTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGAGATAAAAACAATGTGGAAGACAAATAGCCTGTGCTTTAA  886

seq1  AAAAAAAAAATCTTTCCTAAGAACATAAGATAAAACAAAACAATAAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCTTTCCTAAGAACATAAGATAAAACAAAACAATAAACAA  936

seq1  TAAAGAAAACCAAAACCCCAAAAGTAAACAAACAAAAAACTAAAACAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAACCAAAACCCCAAAAGTAAACAAACAAAAAACTAAAACAAAC  986

seq1  AAACAAACAAACAAATTAAAGGAGCAAAAAAAAAATTGAAGCATCCTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAATTAAAGGAGCAAAAAAAAAATTGAAGCATCCTCCA  1036

seq1  GAGATAGACCTAAGAATTC  1069
      |||||||||||||||||||
seq2  GAGATAGACCTAAGAATTC  1055

seq1: chr10_103115576_103116534
seq2: B6Ng01-046H12.g_222_1171

seq1  TCCCATTTCTTATTCTTATATTACCTTCTATTGTTACTACTGATTAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTCTTATTCTTATATTACCTTCTATTGTTACTACTGATTAACAG  50

seq1  GGTTAATCAGTATCTGTTACAAGCAGAAGGCTCTCTGGTAAATTTTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATCAGTATCTGTTACAAGCAGAAGGCTCTCTGGTAAATTTTGAGA  100

seq1  AATGCTCTGATCAATGGGAGTAAAATAAATTATTAGGAGTTGGTTTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTGATCAATGGGAGTAAAATAAATTATTAGGAGTTGGTTTAATA  150

seq1  CTGTATCATTTTGTCATTATAATAGTAATATTATGACCTATAACTTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCATTTTGTCATTATAATAGTAATATTATGACCTATAACTTATTC  200

seq1  GACCATAGGTTCTTAATCTGATCATGGTGTTAGGTATTGGGTTCATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAGGTTCTTAATCTGATCATGGTGTTAGGTATTGGGTTCATTGTT  250

seq1  TGAGGGAGGAGTTACATATAACCCAAAAGTGATTGGTTACTCCCAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGGAGTTACATATAACCCAAAAGTGATTGGTTACTCCCAAGATG  300

seq1  TCTACACTACTATGTACCAGTGGCCATGTACTGGCAGGCAAGTCATCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTACTATGTACCAGTGGCCATGTACTGGCAGGCAAGTCATCATG  350

seq1  AAACCCTGCAGAATCCACTTTTCCCTTAACTGTGAAAATGTGTCAGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGCAGAATCCACTTTTCCCTTAACTGTGAAAATGTGTCAGTAGG  400

seq1  AATAGAGCTTTCAGGTGTATACCAGTTTAATTTTGCCATGTTATATGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGCTTTCAGGTGTATACCAGTTTAATTTTGCCATGTTATATGACC  450

seq1  AGAGTATGTGCTGTCTTCAGTAACAGGGTCTTACTGCCACATTCTGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGTGCTGTCTTCAGTAACAGGGTCTTACTGCCACATTCTGGGAT  500

seq1  GATATCCAACCATACTGAAATTTCCTTGTGCGACTCAAGTTCTGTGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCAACCATACTGAAATTTCCTTGTGCGACTCAAGTTCTGTGAGAT  550

seq1  ATTATTGTCGAAAACCTTCAAACTAAGTAGTAATGCCTTTTTAACAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTCGAAAACCTTCAAACTAAGTAGTAATGCCTTTTTAACAAAAT  600

seq1  TGTGCGTGTCTGTGCATATATATATATATATATATATGATATATAGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGTCTGTGCATATATATATATATATATATATGATATATAGATCT  650

seq1  CTTTTATCTTTAAACCCATATAGTTGAATGAAATGTATTAGAAAATACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTTTAAACCCATATAGTTGAATGAAATGTATTAGAAAATACAT  700

seq1  TTTTGCTTTACATCATGAATCTTTAATTTGTTTTCAAATGATCAATTTCA  750
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTGCTTTACATCATGAATCTTTAATTTGTTTTC-AATGATCAATTTCA  749

seq1  GTATTTTATACAGCAAGCTTCTCTTTATAAATAAAAAGTGAACATGTTAT  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTA-TTTATACAGCAAGCTTCTCTTTATAAATAAAAAGTGAACATGTTAT  798

seq1  TTAGAGAAAACTAGTTAACGTGGAGTTTCGTGTTAGGAAAGTAGTTTTAG  850
      |||||  |||||||||||||||||||||||||||| | ||| ||||| ||
seq2  TTAGAAGAAACTAGTTAACGTGGAGTTTCGTGTTAAG-AAGAAGTTTAAG  847

seq1  GTACGTTATTCTTGTAAAGTTACTTATTATCCTATACCTATATT-ACTTC  899
      | |||||||||||||||   |||||||| | | ||| |  |||| |||||
seq2  G-ACGTTATTCTTGTAA--GTACTTATTTTTC-ATAACCTTATTAACTTC  893

seq1  AGCTGAAGGGAAAGTGAAAATGGAAAATGGATTATTTCTGGTATTTGTCA  949
       ||   |||| ||||| |||||| |||||||||||||| ||||||   ||
seq2  CGCCTGAGGG-AAGTG-AAATGG-AAATGGATTATTTCCGGTATTGTGCA  940

seq1  GATACTTAGT  959
      ||||||||||
seq2  GATACTTAGT  950