BAC Information

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BAC

Clone NameB6Ng01-046L14
Chromosome10 (Build37)
Map Location 52,118,078 - 52,287,557
singlet/doubletdoublet
Overlap geneNepn, D10Ertd438e, EG629689, Zfa
Upstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294
Downstream geneSlc35f1, Pln, EG432460, Mcm9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046L14.bB6Ng01-046L14.g
ACCDH871800DH871801
length1,0331,101
definitionDH871800|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L14, 5' end.DH871801|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,286,516 - 52,287,557)(52,118,078 - 52,119,192)
sequence
gaattcacatattttggacaatggctcgcttacccatttttctcttcaaa
gagggctaaaaccagtccacatattccatcttctgccactggctaccccg
aactcttttttattgaaaagaactgtgtgattacttggactcatccagat
aattcagagtaattctcttattttaagtcctgttgataagtcactatgat
tcccatgtgacctcaatctcccttatcaatcacctttgtcaaggaccagt
agtaggttctgtagatcaagacaaaggcatctgtaggtgtccaccacatt
ttgtacaaattttacttcaaaagaacagaggtttcagaagctattgatac
ctgatgcataccatacactattttatgtgcttaagtatgcagttatgtct
ttactaggttgttggtttttttcactagcttcttagattcagggaaattg
atctgtgttagttcctgtgattacaacagtatctggtatataaggggctc
tttacaagagaagattattgactgaataaatatgagacaaacaataggtg
ttatacttttgttgattttactgacagtgttgaattcatttgttggcaga
gctttctgtaggcaaaaatcgcagacactgagaagtcatattcataaatg
aaaagaaagaaacctactttttaaccattaaatgtttgttttgaacagca
tcctcttatattaacaccaagagaacagagccattccttgataaactcag
ctttctactaggaaatagagactacctcaaaggctagagacatgactcaa
aggttaagagcactatttgttcttccagaggtcctgagttcaattcctac
caacaacatggtggctcataaccatctataatgagacctggtgcactctt
ctggcctgcagacatacatgcagacagaacactgtatacttaataaataa
atcagagagaggggggagaaagagagagagagaggaaaaacccctcaaat
agcttggtgagacggcctcagggttcttccagt
gaattctacattccatccttaaatgtatgttacagccataaggttcatag
aaatatatacttgagtgggaaacatgtgctggttactgttttacttgctg
gcaacctatggtggggcaggcaattttattttattattttattttactca
tttgtttattttgagacagggtttctctatgtagctctggctgtcctaga
actcactttgttaaccaggctggcctcaaaatgcacagagatccacctgc
ctctgccttcctagtgctgggattaaagacatacatcaccgtcacctgga
aatttcaacttcttaagccttggctttcctcactgaagggtcagtaatca
ttctttgtagaaaaaaattaagcagcaaatttttagaaaattgtgactac
tttaattgacagacatcaaaaccaatccctgctgactctggcaaagagag
taagaaaatattttccatgcttaatagaaatattaagattctagctacta
gattcagctaggaccaggcagaatctctctgttatgtaggccactctctg
cactccatatgtagaaatgaaaacaaattgaaacctgataatgtgctttg
tctcatccccaaatgaatcacgtatctggatctatgccatcttttagaca
agcctttcagagttatcagggcttgtggccattctagataagtgaaagtt
ttagtgacaccaggttcttcttttggggattcttgacttctttaacaagt
caagaagtgagggtcggtgtctatttccaactctgtataaaaggtaaata
cataggacaggtcatttcagaatgtcacagacaaatgaaatggactgctt
cccttttggtggaggggagactgaagttcatcactaaatgggagatctgg
acagatcatctatatatacccattttttaaaaaaaaagtgtatggttatg
tgttcaggtcttgagtctttttgaattacagccagtcatgaaaaaaaaaa
aatattgtagccaggaaggcagctttgaagccatagaacctgggtgaact
tcactttctacttccagttctcacaattgtaaaccaacatgggcatccca
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_52286516_52287557
seq2: B6Ng01-046L14.b_47_1079 (reverse)

seq1  ACTGGAAGAAACCCCTGAGGGCCTGTCTTCAACCAAGCTATTTTGAGTGT  50
      ||||||||||  |||||||| | | ||    ||||||||| |||||| | 
seq2  ACTGGAAGAA--CCCTGAGGCCGTCTC----ACCAAGCTA-TTTGAGGGG  43

seq1  TTTTTCCTCTCTCTCTCTCTTTCTCCCCCCCTCTCTCTTGATTTATTTAT  100
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  TTTTTCCTCTCTCTCTCTCTTTCT-CCCCCCTCTCTC-TGATTTATTTAT  91

seq1  TAAGTATACAGTGTTCTGTCTGCATGTATGTCTGCAGGCCAGAAGAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATACAGTGTTCTGTCTGCATGTATGTCTGCAGGCCAGAAGAGTGC  141

seq1  ACCAGGTCTCATTATAGATGGTTATGAGCCACCATGTTGTTGGTAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTCTCATTATAGATGGTTATGAGCCACCATGTTGTTGGTAGGAAT  191

seq1  TGAACTCAGGACCTCTGGAAGAACAAATAGTGCTCTTAACCTTTGAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGACCTCTGGAAGAACAAATAGTGCTCTTAACCTTTGAGTCA  241

seq1  TGTCTCTAGCCTTTGAGGTAGTCTCTATTTCCTAGTAGAAAGCTGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAGCCTTTGAGGTAGTCTCTATTTCCTAGTAGAAAGCTGAGTTT  291

seq1  ATCAAGGAATGGCTCTGTTCTCTTGGTGTTAATATAAGAGGATGCTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAATGGCTCTGTTCTCTTGGTGTTAATATAAGAGGATGCTGTTC  341

seq1  AAAACAAACATTTAATGGTTAAAAAGTAGGTTTCTTTCTTTTCATTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACATTTAATGGTTAAAAAGTAGGTTTCTTTCTTTTCATTTATG  391

seq1  AATATGACTTCTCAGTGTCTGCGATTTTTGCCTACAGAAAGCTCTGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGACTTCTCAGTGTCTGCGATTTTTGCCTACAGAAAGCTCTGCCAA  441

seq1  CAAATGAATTCAACACTGTCAGTAAAATCAACAAAAGTATAACACCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAATTCAACACTGTCAGTAAAATCAACAAAAGTATAACACCTATT  491

seq1  GTTTGTCTCATATTTATTCAGTCAATAATCTTCTCTTGTAAAGAGCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTCATATTTATTCAGTCAATAATCTTCTCTTGTAAAGAGCCCCT  541

seq1  TATATACCAGATACTGTTGTAATCACAGGAACTAACACAGATCAATTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACCAGATACTGTTGTAATCACAGGAACTAACACAGATCAATTTCC  591

seq1  CTGAATCTAAGAAGCTAGTGAAAAAAACCAACAACCTAGTAAAGACATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTAAGAAGCTAGTGAAAAAAACCAACAACCTAGTAAAGACATAA  641

seq1  CTGCATACTTAAGCACATAAAATAGTGTATGGTATGCATCAGGTATCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATACTTAAGCACATAAAATAGTGTATGGTATGCATCAGGTATCAAT  691

seq1  AGCTTCTGAAACCTCTGTTCTTTTGAAGTAAAATTTGTACAAAATGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGAAACCTCTGTTCTTTTGAAGTAAAATTTGTACAAAATGTGGT  741

seq1  GGACACCTACAGATGCCTTTGTCTTGATCTACAGAACCTACTACTGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCTACAGATGCCTTTGTCTTGATCTACAGAACCTACTACTGGTCC  791

seq1  TTGACAAAGGTGATTGATAAGGGAGATTGAGGTCACATGGGAATCATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAAGGTGATTGATAAGGGAGATTGAGGTCACATGGGAATCATAGT  841

seq1  GACTTATCAACAGGACTTAAAATAAGAGAATTACTCTGAATTATCTGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATCAACAGGACTTAAAATAAGAGAATTACTCTGAATTATCTGGAT  891

seq1  GAGTCCAAGTAATCACACAGTTCTTTTCAATAAAAAAGAGTTCGGGGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAAGTAATCACACAGTTCTTTTCAATAAAAAAGAGTTCGGGGTAG  941

seq1  CCAGTGGCAGAAGATGGAATATGTGGACTGGTTTTAGCCCTCTTTGAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGCAGAAGATGGAATATGTGGACTGGTTTTAGCCCTCTTTGAAGA  991

seq1  GAAAAATGGGTAAGCGAGCCATTGTCCAAAATATGTGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGGGTAAGCGAGCCATTGTCCAAAATATGTGAATTC  1033

seq1: chr10_52118078_52119192
seq2: B6Ng01-046L14.g_66_1166

seq1  GAATTCTACATTCCATCCTTAAATGTATGTTACAGCCATAAGGTTCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTCCATCCTTAAATGTATGTTACAGCCATAAGGTTCATAG  50

seq1  AAATATATACTTGAGTGGGAAACATGTGCTGGTTACTGTTTTACTTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATACTTGAGTGGGAAACATGTGCTGGTTACTGTTTTACTTGCTG  100

seq1  GCAACCTATGGTGGGGCAGGCAATTTTATTTTATTATTTTATTTTACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTATGGTGGGGCAGGCAATTTTATTTTATTATTTTATTTTACTCA  150

seq1  TTTGTTTATTTTGAGACAGGGTTTCTCTATGTAGCTCTGGCTGTCCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATTTTGAGACAGGGTTTCTCTATGTAGCTCTGGCTGTCCTAGA  200

seq1  ACTCACTTTGTTAACCAGGCTGGCCTCAAAATGCACAGAGATCCACCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTTGTTAACCAGGCTGGCCTCAAAATGCACAGAGATCCACCTGC  250

seq1  CTCTGCCTTCCTAGTGCTGGGATTAAAGACATACATCACCGTCACCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTCCTAGTGCTGGGATTAAAGACATACATCACCGTCACCTGGA  300

seq1  AATTTCAACTTCTTAAGCCTTGGCTTTCCTCACTGAAGGGTCAGTAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAACTTCTTAAGCCTTGGCTTTCCTCACTGAAGGGTCAGTAATCA  350

seq1  TTCTTTGTAGAAAAAAATTAAGCAGCAAATTTTTAGAAAATTGTGACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTAGAAAAAAATTAAGCAGCAAATTTTTAGAAAATTGTGACTAC  400

seq1  TTTAATTGACAGACATCAAAACCAATCCCTGCTGACTCTGGCAAAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGACAGACATCAAAACCAATCCCTGCTGACTCTGGCAAAGAGAG  450

seq1  TAAGAAAATATTTTCCATGCTTAATAGAAATATTAAGATTCTAGCTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATATTTTCCATGCTTAATAGAAATATTAAGATTCTAGCTACTA  500

seq1  GATTCAGCTAGGACCAGGCAGAATCTCTCTGTTATGTAGGCCACTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGCTAGGACCAGGCAGAATCTCTCTGTTATGTAGGCCACTCTCTG  550

seq1  CACTCCATATGTAGAAATGAAAACAAATTGAAACCTGATAATGTGCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATATGTAGAAATGAAAACAAATTGAAACCTGATAATGTGCTTTG  600

seq1  TCTCATCCCCAAATGAATCACGTATCTGGATCTATGCCATCTTTTAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCCCAAATGAATCACGTATCTGGATCTATGCCATCTTTTAGACA  650

seq1  AGCCTTTCAGAGTTATCAGGGCTTGTGGCCATTCTAGATAAGTGAAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCAGAGTTATCAGGGCTTGTGGCCATTCTAGATAAGTGAAAGTT  700

seq1  TTAGTGACACCAGGTTCTTCTTTTGGGGATTCTTGACTTCTTTAACAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGACACCAGGTTCTTCTTTTGGGGATTCTTGACTTCTTTAACAAGT  750

seq1  CAAGAAGTGAGGGTCGGTGTCTATTTCCAACTCTGTATAAAAGGTAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTGAGGGTCGGTGTCTATTTCCAACTCTGTATAAAAGGTAAATA  800

seq1  CATAGGACAGGTCATTTCAGAATGTCACAGACAAATGAAATGGACTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGACAGGTCATTTCAGAATGTCACAGACAAATGAAATGGACTGCTT  850

seq1  CCCTTTTGGTGGAGGGGGAGACTGAAGTTCATCACTAAAATGGGAGATCT  900
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  CCCTTTTGGTGGA-GGGGAGACTGAAGTTCATCACT-AAATGGGAGATCT  898

seq1  GGACAAGATCATCTATATAATACCCATTTTTTTAAAAAAAAAAGTGTATG  950
      |||| ||||||||||||| |||||||||||||  ||||||||||||||||
seq2  GGAC-AGATCATCTATAT-ATACCCATTTTTT--AAAAAAAAAGTGTATG  944

seq1  GTTATGTGTCCAGGTCTTGAGTTCTTTTTGAAATACAGGCCAGTCATGAA  1000
      ||||||||| ||||||||||| |||||||||| |||| ||||||||||||
seq2  GTTATGTGTTCAGGTCTTGAG-TCTTTTTGAATTACA-GCCAGTCATGAA  992

seq1  AAAAAAAAAATAATGTAGCCAAGGAAGGGCAGGCTTTTGAAGCCATAGAA  1050
      |||||||||||| ||||||| ||||| |||||   |||||||||||||||
seq2  AAAAAAAAAATATTGTAGCC-AGGAA-GGCAG--CTTTGAAGCCATAGAA  1038

seq1  CCT-GGTGAACTTTCACTTTCTACTTCCCAGTTTTCTCACATTG-ATACC  1098
      ||| ||||||| |||||||||||||| |||||| || || |||| | |||
seq2  CCTGGGTGAAC-TTCACTTTCTACTT-CCAGTTCTCACA-ATTGTAAACC  1085

seq1  AACATTGGCAATCCCAA  1115
      ||||| ||| |||||||
seq2  AACATGGGC-ATCCCAA  1101