BAC Information

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BAC

Clone NameB6Ng01-046L15
Chromosome1 (Build37)10 (Build37)
Map Location 14,889,333 - 14,890,405104,053,636 - 104,054,601
singlet/doubletsingletsinglet
Overlap geneTrpa1
Upstream geneLOC100039869, Eya1, LOC665391, Msc, Smt3h2-ps4, EG665407
Downstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046L15.bB6Ng01-046L15.g
ACCDH871802DH871803
length1,0841,132
definitionDH871802|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L15, 5' end.DH871803|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,889,333 - 14,890,405)(104,053,636 - 104,054,601)
sequence
gaattctaaaatgagctctcataatataagtgacaacgaaaccagcttat
tcttattgaatatgacttagtttacaattcatgggcatagaatacctgca
taaactcaggccgcaaatttcttagtccataaggctgctgcacagtcaaa
tgcaaaaagttacgtccaagatgatcttttatgtctactttggcacctga
aaaaaagcacaatagaaaaataaaatctgctcatgggtttataacatggt
ctttggtgatccttcccaaatctttaccttacagtcaactatagttaggt
ggaaaaaatggacatttttaaaatgagtttactttactctgtgtgtgtgt
gacagagagagagagagagagagagagagagagagacagagacagagaga
gacagagagacagagagacagagagacagagagacagagagagagagcga
gagagacagagagagagactgtgatgctttatatttctaagtgaatcctc
aagttttaaacataaaatgaacaaagagcatgcccttttgtccccatggc
accaggctagcctgaaatggagacagtgttgcatctacacacatgtctac
tatgacagaaagctcctaacatcttcagccagctcctggtgtttaccagc
tgccttatacatgtgatatgttattgctatgaattatctttcaatatttt
tttactggactgacattattaaaaaatcctttattaacctttgtgtgcac
agagtatgtcccagtgcctgacatgagatagcgggttaacatgattatct
gagcagatgggtctgcttctgagcggtacctttacagaggagcaaattca
caatgttccaggatgcagaagctgttgctaaaataagtggagagcgtcct
tcagaatcagtgctgttgatgtctgctccctaaaacaaagcaagtcactt
ggcgggggagaacgggactacagaaagcagcagctgactttgcatgccta
actagaatacaatgttcattactccagcactcatctcactaatcatggaa
tacatgacatttctataaattcaataccattaga
gaattcaacactggtgaacataaaaaagaaatagtacacattcgccaggc
cccaccccgagatgactagctataggcaatcaatgtctacagagggcgag
tatcagacttctccaggaaggagttcttgacaggttgtccaattccaagt
ggtcatcccaaaaccaaaatgtttatgtatatatgaacattgctaaatgg
gcccagcagatgtcatatattttcatatgtagattaatgtgatagaaaaa
gagaccataaactttagaggaacagaaagaagagagggtgcttcacataa
aaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaa
gatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgc
tgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttct
gcaaggcaaaagacaccgtcaataagacaaagagaccaccaacagattgg
gaaaggatctttacctatcctaaatcagataggggactaatatccaacat
atataaagaactcaagaaggtggacttcagaaaatcaaataaccccatta
aaaaatggggctcagaactgaacaaagaattctcacctgaggaataccga
atggcagagaagcacctgaaaaaatgttcaacatccttaatcatcaggga
aatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatgg
ctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaa
agaggaacactcctccattgttggtgggattgcaggcttgtacaaccact
ctggaaatcagtctggcggttcctcagaaaactggatatagtactaccgg
agatccagcaatacctctcctgggcatatatccagaagatgcccaactgg
tagaaggacacatgctccactatgttcatagcagccttatttatatagcc
agaagctggaaggaacccagatgctcctcaacaagaatggaatcagaaaa
atgtggtacatcctcacatagagtctactcagctattaaaagaatgaatt
tatgaaatttctagcaaatgatggacctggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14889333_14890405
seq2: B6Ng01-046L15.b_45_1128

seq1  GAATTCTAAAATGAGCTCTCATAATATAAGTGACAACGAAACCAGCTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAATGAGCTCTCATAATATAAGTGACAACGAAACCAGCTTAT  50

seq1  TCTTATTGAATATGACTTAGTTTACAATTCATGGGCATAGAATACCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGAATATGACTTAGTTTACAATTCATGGGCATAGAATACCTGCA  100

seq1  TAAACTCAGGCCGCAAATTTCTTAGTCCATAAGGCTGCTGCACAGTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCAGGCCGCAAATTTCTTAGTCCATAAGGCTGCTGCACAGTCAAA  150

seq1  TGCAAAAAGTTACGTCCAAGATGATCTTTTATGTCTACTTTGGCACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAAGTTACGTCCAAGATGATCTTTTATGTCTACTTTGGCACCTGA  200

seq1  AAAAAAGCACAATAGAAAAATAAAATCTGCTCATGGGTTTATAACATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCACAATAGAAAAATAAAATCTGCTCATGGGTTTATAACATGGT  250

seq1  CTTTGGTGATCCTTCCCAAATCTTTACCTTACAGTCAACTATAGTTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGATCCTTCCCAAATCTTTACCTTACAGTCAACTATAGTTAGGT  300

seq1  GGAAAAAATGGACATTTTTAAAATGAGTTTACTTTACTCTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATGGACATTTTTAAAATGAGTTTACTTTACTCTGTGTGTGTGT  350

seq1  GAC----------------AGAGAGAGAGAGAGAGACAGAGACAGAGAGA  384
      |||                |||||||||||||||||||||||||||||||
seq2  GACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGAGA  400

seq1  GACAGAGAGACAGAGAGACAGAGAGACAGAGAGACAGAGAGAGAGAGCGA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGACAGAGAGACAGAGAGACAGAGAGACAGAGAGAGAGAGCGA  450

seq1  GAGAGACAGAGAGAGAGACTGTGATGCTTTATATTTCTAAGTGAATCCTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAGAGAGAGACTGTGATGCTTTATATTTCTAAGTGAATCCTC  500

seq1  AAGTTTTAAACATAAAATGAACAAAGAGCATGCCCTTTTGTCCCCATGGC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAAACATAAAATGAACAAAGAGCATGCCCTTTTGTCCCCATGGC  550

seq1  ACCAGGCTAGCCTGAAATGGAGACAGTGTTGCATCTACACACATGTCTAC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTAGCCTGAAATGGAGACAGTGTTGCATCTACACACATGTCTAC  600

seq1  TATGACAGAAAGCTCCTAACATCTTCAGCCAGCTCCTGGTGTTTACCAGC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGAAAGCTCCTAACATCTTCAGCCAGCTCCTGGTGTTTACCAGC  650

seq1  TGCCTTATACATGTGATATGTTATTGCTATGAATTATCTTTCAATATTTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATACATGTGATATGTTATTGCTATGAATTATCTTTCAATATTTT  700

seq1  TTTACTGGACTGACATTATTAAAAAATCCTTTATTAACCTTTGTGTGCAC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGGACTGACATTATTAAAAAATCCTTTATTAACCTTTGTGTGCAC  750

seq1  AGAGTATGTCCCAGTGCCTGACATGAGATAGCGGGTTAACATGATTATCT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGTCCCAGTGCCTGACATGAGATAGCGGGTTAACATGATTATCT  800

seq1  GAGCAGATGGGTCTGCTTCTGAGCGGTACCTTTACAGAGGAGCAAATTCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATGGGTCTGCTTCTGAGCGGTACCTTTACAGAGGAGCAAATTCA  850

seq1  CAATGTTCCAGGATGCAGAAGCTGTTGCTAAAATAAGTGGAGAGCGTCCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCCAGGATGCAGAAGCTGTTGCTAAAATAAGTGGAGAGCGTCCT  900

seq1  TCAGAATCAGTGCTGTTGATGTCTGCTCCCTAAAACAAAGCAAGTCACTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCAGTGCTGTTGATGTCTGCTCCCTAAAACAAAGCAAGTCACTT  950

seq1  GGC-GGGGAGAACGGGACTACAGAAAGCAGCAGCTGACTTTGCAATGCCT  983
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGCGGGGGAGAACGGGACTACAGAAAGCAGCAGCTGACTTTGC-ATGCCT  999

seq1  AACTAGAATACAATGTCCATTACTCCAGCACTCAATCTCAACTAATCATG  1033
      |||||||||||||||| |||||||||||||||| ||||| ||||||||||
seq2  AACTAGAATACAATGTTCATTACTCCAGCACTC-ATCTC-ACTAATCATG  1047

seq1  GAATTACATGACATTTCTATAAAATTCAAATACCATTAGA  1073
      ||| |||||||||||||||| |||||| ||||||||||||
seq2  GAA-TACATGACATTTCTAT-AAATTC-AATACCATTAGA  1084

seq1: chr10_104053636_104054601
seq2: B6Ng01-046L15.g_454_1197 (reverse)

seq1  CTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCTCCATTTACATTTAATTTAATTAATGTAATTACAATTAATTAATTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTAATTAAATAATTTAATAATTTAATTGATAAATTAATTTAATTAATTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTAATTAATTAAATTAAATAATAATTTAATAATAAATTAAATATTTTA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAATTAATAATAATTTTATAAGTAAATAATTTAATTAATGTAATTTAATT  250
                      |  | ||  || ||||  |    | ||||| |  
seq2  ---------------CTCCAGGTCCATCATTTGCT---AGAAATTTCA--  30

seq1  AATGTAATTACATTACATTTAATAGCT--------CCATTGTGTAAATGT  292
          ||| | |||| | ||||||||||         |  ||||   ||||
seq2  ----TAAATTCATT-CTTTTAATAGCTGAGTAGACTCTATGTGAGGATGT  75

seq1  ACCACA-TTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTT  341
      |||||| |||||||  || ||||   |||||||| |||||||||||| ||
seq2  ACCACATTTTTCTGATTCCATTC--TTGTTGAGGAGCATCTGGGTTCCTT  123

seq1  CCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCATG  391
      |||||| ||||||| ||||||||||||||||||||| |||||||||||||
seq2  CCAGCTTCTGGCTA-TATAAATAAGGCTGCTATGAACATAGTGGAGCATG  172

seq1  TGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGGT  441
      |||||||| |||| ||| ||||||||||||||||||||||||| ||||||
seq2  TGTCCTTC-TACCAGTT-GGGCATCTTCTGGATATATGCCCAGGAGAGGT  220

seq1  ATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCCA  491
      |||||||||| ||||||||||||||| |||| |||||||| |||||||||
seq2  ATTGCTGGAT-CTCCGGTAGTACTATATCCAGTTTTCTGAGGAACCGCCA  269

seq1  GACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGA  541
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGA  319

seq1  GGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAA  591
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAGTGTTCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCACCTGAA  369

seq1  TTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGT  419

seq1  TTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGT  469

seq1  GCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCT  519

seq1  GAGCCCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCACCTTCTT  791
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTT  569

seq1  GAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAGGATAGG  841
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGG  619

seq1  TAAAGATCCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTG  891
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  TAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTG  669

seq1  TCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAAC  941
      ||||||||||||||||| ||||| | ||| || ||||||||||| |||| 
seq2  TCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAAT  719

seq1  TCTCTATCTTACAGCACAAGCCATT  966
      |||| ||||||||||||||||||||
seq2  TCTCGATCTTACAGCACAAGCCATT  744