BAC Information

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BAC

Clone NameB6Ng01-046L18
Chromosome10 (Build37)14 (Build37)
Map Location 104,053,903 - 104,054,3639,840,538 - 9,841,585
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046L18.bB6Ng01-046L18.g
ACCDH871808DH871809
length9461,030
definitionDH871808|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L18, 5' end.DH871809|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(9,840,538 - 9,841,585)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacaaagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatacaccccataatc
agcatccaaactctgacaccattgcatatactagcaagattttaatgaaa
ggatccagatgtagctgtctcttgtgagactattccggggctagcaaaca
cagaagtgatgctcacagtcagctaatgatgatcacaggctccatg
gaattcaagacccatacctaaacatagtaaaagtcatatgcagcaaacca
gtagctgacagcaaactgaatggaaagaaacttaacgcaatcccactaaa
atcagggactagacaaggctgcccactctctctttatctattcaacacaa
tacttgaagttccagctagagcaattagacattaggtagcacactgtcta
tcttgggtgacttgcagcagcagtcttctcttctccctgcaatacattct
gcaagctgagccacgtgaagcttagccacatgattttctaacttagaata
aattctgagatttgactgtgcatggtacaatcactacacagtgttcttct
tccatcttctatgcatggaagatgcatagattcatagaagatacatatgc
tcacagaccttcacactcttcacaaatatacaaagctccatcctgatttt
tctatgctgctcttatgagcacttggcattttttttttaatgacagctct
catttcaagtatgatccctccagacaacttctattaaacatgcttctttg
caacccacttccactgttactttctaagacttctgttcaagtctcttcgt
atttcttttctgatacgctaattttgacttacttatgaagtatatttgtt
attgtttcttccactggaatgtaaatgcaaggagaacagaagccaggttt
ggctattgtaccaaatagttccatgagatacattgtctaggatccattat
acctttaggtccccataaaatattttatttatgtttacatgatatatggt
gctcattatttcgtagtatgataaacatcttgaacatttaggtataaaga
tttatatctcaatataacgaggtcatatgtggcaaaggcaaaccacatta
ggctaagggaaacatttctttaattgaggaaaaatatgggcactatctct
atctctcatacattccagtagtttagatagaacagttgggcaagacaagg
aataaagacagcaagtatgtgtgtttagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-046L18.b_47_517 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCCTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  |||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGAACATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471

seq1: chr14_9840538_9841585
seq2: B6Ng01-046L18.g_68_1097 (reverse)

seq1  ATCTATACACACATACTTTGCTGTCTTTTATTTCTTTGTCTTGCCCAACT  50
      ||||| |||||||||| |||||||||||   ||| |||||||||||||||
seq2  ATCTAAACACACATAC-TTGCTGTCTTT--ATTCCTTGTCTTGCCCAACT  47

seq1  GTTCTATCTAAAACTACTGGGATTGTATTGAAGAGATAGAGATAGTGCCC  100
      ||||||||| |||||||| ||| |||||   |||||||||||||||||||
seq2  GTTCTATCT-AAACTACT-GGAATGTAT--GAGAGATAGAGATAGTGCCC  93

seq1  ATTATTTTTCCTCAATTTAAAGGAAATGTTTTCACCTTAGCCTTAATGTT  150
      | |||||||||||||||  || |||||||||   |||||||| |||||| 
seq2  A-TATTTTTCCTCAATT--AAAGAAATGTTT--CCCTTAGCC-TAATGT-  136

seq1  GGTTTTGCCTTTGCCACATATGACCTTCGTTATATTGAGATATAAATCTT  200
       | |||||||||||||||||||||| |||||||||||||||||||||| |
seq2  -GGTTTGCCTTTGCCACATATGACC-TCGTTATATTGAGATATAAATC-T  183

seq1  TTATACCTAAATTGTTCAAGATGTTTATCATACTACGAAATAATGAGCAC  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTAAA-TGTTCAAGATGTTTATCATACTACGAAATAATGAGCAC  232

seq1  CATATATCATGTAAACATAAATAAAATATTTTATGGGGACCTAAAGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATCATGTAAACATAAATAAAATATTTTATGGGGACCTAAAGGTAT  282

seq1  AATGGATCCTAGACAATGTATCTCATGGAACTATTTGGTACAATAGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATCCTAGACAATGTATCTCATGGAACTATTTGGTACAATAGCCAA  332

seq1  ACCTGGCTTCTGTTCTCCTTGCATTTACATTCCAGTGGAAGAAACAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTTCTGTTCTCCTTGCATTTACATTCCAGTGGAAGAAACAATAA  382

seq1  CAAATATACTTCATAAGTAAGTCAAAATTAGCGTATCAGAAAAGAAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATACTTCATAAGTAAGTCAAAATTAGCGTATCAGAAAAGAAATAC  432

seq1  GAAGAGACTTGAACAGAAGTCTTAGAAAGTAACAGTGGAAGTGGGTTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACTTGAACAGAAGTCTTAGAAAGTAACAGTGGAAGTGGGTTGCA  482

seq1  AAGAAGCATGTTTAATAGAAGTTGTCTGGAGGGATCATACTTGAAATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCATGTTTAATAGAAGTTGTCTGGAGGGATCATACTTGAAATGAG  532

seq1  AGCTGTCATTAAAAAAAAAATGCCAAGTGCTCATAAGAGCAGCATAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCATTAAAAAAAAAATGCCAAGTGCTCATAAGAGCAGCATAGAAA  582

seq1  AATCAGGATGGAGCTTTGTATATTTGTGAAGAGTGTGAAGGTCTGTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGATGGAGCTTTGTATATTTGTGAAGAGTGTGAAGGTCTGTGAGC  632

seq1  ATATGTATCTTCTATGAATCTATGCATCTTCCATGCATAGAAGATGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCTTCTATGAATCTATGCATCTTCCATGCATAGAAGATGGAAG  682

seq1  AAGAACACTGTGTAGTGATTGTACCATGCACAGTCAAATCTCAGAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACTGTGTAGTGATTGTACCATGCACAGTCAAATCTCAGAATTTA  732

seq1  TTCTAAGTTAGAAAATCATGTGGCTAAGCTTCACGTGGCTCAGCTTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTTAGAAAATCATGTGGCTAAGCTTCACGTGGCTCAGCTTGCAG  782

seq1  AATGTATTGCAGGGAGAAGAGAAGACTGCTGCTGCAAGTCACCCAAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTGCAGGGAGAAGAGAAGACTGCTGCTGCAAGTCACCCAAGATA  832

seq1  GACAGTGTGCTACCTAATGTCTAATTGCTCTAGCTGGAACTTCAAGTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGTGCTACCTAATGTCTAATTGCTCTAGCTGGAACTTCAAGTATT  882

seq1  GTGTTGAATAGATAAAGAGAGAGTGGGCAGCCTTGTCTAGTCCCTGATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAATAGATAAAGAGAGAGTGGGCAGCCTTGTCTAGTCCCTGATTT  932

seq1  TAGTGGGATTGCGTTAAGTTTCTTTCCATTCAGTTTGCTGTCAGCTACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGATTGCGTTAAGTTTCTTTCCATTCAGTTTGCTGTCAGCTACTG  982

seq1  GTTTGCTGCATATGACTTTTACTATGTTTAGGTATGGGTCTTGAATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGCATATGACTTTTACTATGTTTAGGTATGGGTCTTGAATTC  1030