BAC Information

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BAC

Clone NameB6Ng01-046N19
Chromosome10 (Build37)
Map Location 99,287,350 - 99,303,936
singlet/doubletdoublet
Overlap genenone
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl
Downstream geneLOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046N19.bB6Ng01-046N19.g
ACCDH871895DH871896
length1,1481,060
definitionDH871895|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N19, 5' end.DH871896|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,302,767 - 99,303,936)(99,287,350 - 99,288,446)
sequence
gaattcctttccttctttcgtcacttaaacccttctacccttctgagttc
cattctgtcgtcccgtctctaagaaaacctgtgctataagtcgtcttaca
caggaggacttagcttccttaataatcgtacttgggacattggctacaag
tagttctgctgtgccagaccataaagccacgtgcctaccatattacctat
ggctgcagtatttacattagagagaagctcagtcaataagcagagagggc
atgaggtcagaaggggatagttaccacacagaaactgactgggatcactt
gactgaacggttgacaaagagagagaccactcacaaaggggatttcctag
atttgcctcaaaatattgagtgggacaaacagagagaatgcaagacagag
atcagttttgaagcagttgtggaaatgactttgatcatgtcatgtctccc
aaatgatacttgaggaggttcatcagtagactggtatctgtttcccacca
cgagaacacaagtcctgacactggcagacgcaacagcacacattcataac
ttgacctcctgctttgaactctttccaggaagcacgtgccccaagagtca
gaattcccttccagaaatacccttttccttgtgtgttctgcctgcttcca
atactgaagaaaacatctgtgctctccacttaaaccgctagcctagccgc
tttttgctaattcaccacttttcccatagcccctgacttcccgccatgaa
tattctctgatccaaatagcacctcatttttcgttcatttccactgtttt
gttccttttctacatgcttttctaccctgcttcccgttttcttttttggc
atgcccaaagctcatcttcctgtagaagccaatttaatgtcatcttcttc
ctcagtacttcctgaagcctagtacataatcctttgtccccttccttgat
tgtcttacccgcatggacctgtgctctgatatatacttcctctgctctgg
gatgtagctcagtcacagccttacatagagcccatagattgatcctagat
acgtttcatagcatgtgcttataaattttatacccagaaccattgtttaa
atatggattatggactgagctaaaggtaagttccaacctctttgtact
gaattctctagtgaaaccatctgggcccagggatttatttgagagaagtt
tttaaactaccagagcaatttccataactgttgtagggatattcaaatga
tttagttcatactgtattcagtttatgcatttaaaggaacatatgttttc
aaataatgtaggcaaaattgtgtgtaggatctcactctctttctctcttt
ctccttaatatcaacagggactatgacaataagacccactttcataccaa
gtattaacaactggcatatttctctttgcaatttttgccagttttcttgt
ttttttttttttttttgctctttccatagaaattcttggtttgcttttct
cttgttgtttaacgtgtttccaatatcacattttatttctacagtacaat
ttattttctttgttgtttttttctgtgtgcatacacactatagttgagag
tgttttgcatattaagaaagcattcactcactgaactgcactgccagccc
taattagattcttggtacataatttaaaacatctatgtacgaggctagaa
tctgttaattagagtaaagctggattgcaggtaccacagtagtttgaatt
ttggtaaaatatgttaattcacagttctatcctgctctaggaccacaact
tttggtgaccatctcaccttcctgatatctgttctctagttctccttgaa
tcaagcatccatgagagtttgggcattttcattttgctgaaatggattct
ttacaaatgtgctaaccaaaaaaaaaagttctggtatgttctacatagag
aaacttaactgatgacaaggggtctagttataaggacaaagcattgttca
gtcagttgcacagagacgacatccatgcctctgtggcttccacgaggctg
atcaggtagtagctggcatgtatattcggttcttcatgctgactgaggag
tttttagctgtgtcacagtctttaggatactcagcataaattctaggcat
ttgtgagttcgcatcggggcacattctgtcaccccactgggttaagtgat
gcatcatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99302767_99303936
seq2: B6Ng01-046N19.b_44_1191 (reverse)

seq1  AGTACAAAGAGTTTGAAACTTACTTTTAGCTCAGTCAATAATTCATAATT  50
      ||||||||||| ||| ||||||| |||||||||||| ||||| |||| ||
seq2  AGTACAAAGAGGTTGGAACTTACCTTTAGCTCAGTCCATAATCCATATTT  50

seq1  GTAAAACAATGGTTCTGGGTATAATATTTTATAAAGCCCACATGCTATGA  100
         ||||||||||||||||||||| | |||||||    ||||||||||||
seq2  ---AAACAATGGTTCTGGGTATAA-AATTTATAA---GCACATGCTATGA  93

seq1  TACCGTAATCCTAGGGATCAAATCTATGGGCTCCTTATGTAAGGCCTGTG  150
       | ||||   ||| ||||| |||||||||||||  ||||||||| |||||
seq2  -AACGTA--TCTA-GGATC-AATCTATGGGCTC--TATGTAAGG-CTGTG  135

seq1  ACTGAGCTACATCCCCAGAGCAGAAGGAAGTATTATTATCAGAGCAACAG  200
      |||||||||||| |||||||||| |||||||||   ||||||||| ||||
seq2  ACTGAGCTACAT-CCCAGAGCAG-AGGAAGTAT--ATATCAGAGC-ACAG  180

seq1  GTCCATGCGGGTTAAGACAATTCAAGGAAGGGGACAAAGGATTATGTACT  250
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  GTCCATGCGGG-TAAGACAA-TCAAGGAAGGGGACAAAGGATTATGTACT  228

seq1  AGGCCTCAGGAAGTACTGAGGAAG-AGATGGACATTAAATTGGCTTCTAC  299
      |||| ||||||||||||||||||| |||| ||||||||||||||||||||
seq2  AGGCTTCAGGAAGTACTGAGGAAGAAGAT-GACATTAAATTGGCTTCTAC  277

seq1  AGGAAGATGAGCTTTGGGCATGCCAAAAAAGAAAACGGGAAGCAGGGTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATGAGCTTTGGGCATGCCAAAAAAGAAAACGGGAAGCAGGGTAG  327

seq1  AAAAGCATGTAGAAAAGGAACAAAACAGTGGAAATGAACGAAAAATGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATGTAGAAAAGGAACAAAACAGTGGAAATGAACGAAAAATGAGG  377

seq1  TGCTATTTGGATCAGAGAATATTCATGGCGGGAAGTCAGGGGCTATGGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTGGATCAGAGAATATTCATGGCGGGAAGTCAGGGGCTATGGGA  427

seq1  AAAGTGGTGAATTAGCAAAAAGCGGCTAGGCTAGCGGTTTAAGTGGAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGTGAATTAGCAAAAAGCGGCTAGGCTAGCGGTTTAAGTGGAGAG  477

seq1  CACAGATGTTTTCTTCAGTATTGGAAGCAGGCAGAACACACAAGGAAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGTTTTCTTCAGTATTGGAAGCAGGCAGAACACACAAGGAAAAG  527

seq1  GGTATTTCTGGAAGGGAATTCTGACTCTTGGGGCACGTGCTTCCTGGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCTGGAAGGGAATTCTGACTCTTGGGGCACGTGCTTCCTGGAAA  577

seq1  GAGTTCAAAGCAGGAGGTCAAGTTATGAATGTGTGCTGTTGCGTCTGCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAAGCAGGAGGTCAAGTTATGAATGTGTGCTGTTGCGTCTGCCA  627

seq1  GTGTCAGGACTTGTGTTCTCGTGGTGGGAAACAGATACCAGTCTACTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGACTTGTGTTCTCGTGGTGGGAAACAGATACCAGTCTACTGAT  677

seq1  GAACCTCCTCAAGTATCATTTGGGAGACATGACATGATCAAAGTCATTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCTCAAGTATCATTTGGGAGACATGACATGATCAAAGTCATTTC  727

seq1  CACAACTGCTTCAAAACTGATCTCTGTCTTGCATTCTCTCTGTTTGTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGCTTCAAAACTGATCTCTGTCTTGCATTCTCTCTGTTTGTCCC  777

seq1  ACTCAATATTTTGAGGCAAATCTAGGAAATCCCCTTTGTGAGTGGTCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATATTTTGAGGCAAATCTAGGAAATCCCCTTTGTGAGTGGTCTCT  827

seq1  CTCTTTGTCAACCGTTCAGTCAAGTGATCCCAGTCAGTTTCTGTGTGGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTCAACCGTTCAGTCAAGTGATCCCAGTCAGTTTCTGTGTGGTA  877

seq1  ACTATCCCCTTCTGACCTCATGCCCTCTCTGCTTATTGACTGAGCTTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCCCTTCTGACCTCATGCCCTCTCTGCTTATTGACTGAGCTTCTC  927

seq1  TCTAATGTAAATACTGCAGCCATAGGTAATATGGTAGGCACGTGGCTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTAAATACTGCAGCCATAGGTAATATGGTAGGCACGTGGCTTTA  977

seq1  TGGTCTGGCACAGCAGAACTACTTGTAGCCAATGTCCCAAGTACGATTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGCACAGCAGAACTACTTGTAGCCAATGTCCCAAGTACGATTAT  1027

seq1  TAAGGAAGCTAAGTCCTCCTGTGTAAGACGACTTATAGCACAGGTTTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGCTAAGTCCTCCTGTGTAAGACGACTTATAGCACAGGTTTTCT  1077

seq1  TAGAGACGGGACGACAGAATGGAACTCAGAAGGGTAGAAGGGTTTAAGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACGGGACGACAGAATGGAACTCAGAAGGGTAGAAGGGTTTAAGTG  1127

seq1  ACGAAAGAAGGAAAGGAATTC  1170
      |||||||||||||||||||||
seq2  ACGAAAGAAGGAAAGGAATTC  1148

seq1: chr10_99287350_99288446
seq2: B6Ng01-046N19.g_66_1125

seq1  GAATTCTCTAGTGAAACCATCTGGGCCCAGGGATTTATTTGAGAGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGTGAAACCATCTGGGCCCAGGGATTTATTTGAGAGAAGTT  50

seq1  TTTAAACTACCAGAGCAATTTCCATAACTGTTGTAGGGATATTCAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTACCAGAGCAATTTCCATAACTGTTGTAGGGATATTCAAATGA  100

seq1  TTTAGTTCATACTGTATTCAGTTTATGCATTTAAAGGAACATATGTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCATACTGTATTCAGTTTATGCATTTAAAGGAACATATGTTTTC  150

seq1  AAATAATGTAGGCAAAATTGTGTGTAGGATCTCACTCTCTTTCTCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTAGGCAAAATTGTGTGTAGGATCTCACTCTCTTTCTCTCTTT  200

seq1  CTCCTTAATATCAACAGGGACTATGACAATAAGACCCACTTTCATACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAATATCAACAGGGACTATGACAATAAGACCCACTTTCATACCAA  250

seq1  GTATTAACAACTGGCATATTTCTCTTTGCAATTTTTGCCAGTTTTCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAACAACTGGCATATTTCTCTTTGCAATTTTTGCCAGTTTTCTTGT  300

seq1  TTTTTTTTTTTTTTTTGCTCTTTCCATAGAAATTCTTGGTTTGCTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTGCTCTTTCCATAGAAATTCTTGGTTTGCTTTTCT  350

seq1  CTTGTTGTTTAACGTGTTTCCAATATCACATTTTATTTCTACAGTACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTTTAACGTGTTTCCAATATCACATTTTATTTCTACAGTACAAT  400

seq1  TTATTTTCTTTGTTGTTTTTTTCTGTGTGCATACACACTATAGTTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTTTGTTGTTTTTTTCTGTGTGCATACACACTATAGTTGAGAG  450

seq1  TGTTTTGCATATTAAGAAAGCATTCACTCACTGAACTGCACTGCCAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCATATTAAGAAAGCATTCACTCACTGAACTGCACTGCCAGCCC  500

seq1  TAATTAGATTCTTGGTACATAATTTAAAACATCTATGTACGAGGCTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGATTCTTGGTACATAATTTAAAACATCTATGTACGAGGCTAGAA  550

seq1  TCTGTTAATTAGAGTAAAGCTGGATTGCAGGTACCACAGTAGTTTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAATTAGAGTAAAGCTGGATTGCAGGTACCACAGTAGTTTGAATT  600

seq1  TTGGTAAAATATGTTAATTCACAGTTCTATCCTGCTCTAGGACCACAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAATATGTTAATTCACAGTTCTATCCTGCTCTAGGACCACAACT  650

seq1  TTTGGTGACCATCTCACCTTCCTGATATCTGTTCTCTAGTTCTCCTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGACCATCTCACCTTCCTGATATCTGTTCTCTAGTTCTCCTTGAA  700

seq1  TCAAGCATCCATGAGAGTTTGGGCATTTTCATTTTGCTGAAATGGATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCATCCATGAGAGTTTGGGCATTTTCATTTTGCTGAAATGGATTCT  750

seq1  TTACAAATGTGCTAACCAAAAAAAAAAGTTCTGGTATGTTCTACATAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGTGCTAACCAAAAAAAAAAGTTCTGGTATGTTCTACATAGAG  800

seq1  AAACTTAACTGATGACAAGGGGTCTAGTTATAAGGACAAAGCATTGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAACTGATGACAAGGGGTCTAGTTATAAGGACAAAGCATTGTTCA  850

seq1  GTCAGTTGCAACAGAAGAACGACATCCATGCCTCTGTGGCTTCCACGAGG  900
      ||||||||| |||||   ||||||||||||||||||||||||||||||||
seq2  GTCAGTTGC-ACAGA--GACGACATCCATGCCTCTGTGGCTTCCACGAGG  897

seq1  CTGATCAGGGTAGTAGCTGGCATGGTTATAATTTTCGGTTTCCTTCCATG  950
      ||||||| ||||||||||||||||  ||||   |||||||  ||| ||||
seq2  CTGATCA-GGTAGTAGCTGGCATG--TATA---TTCGGTT--CTT-CATG  938

seq1  CTGACTGAAGGAGTTTTTTAAGCTGTGGTTCAACAGTCTTTAAGAATAAC  1000
      ||||||| ||||||||||  |||||||  || ||||||||| || |||  
seq2  CTGACTG-AGGAGTTTTT--AGCTGTG--TC-ACAGTCTTT-AGGATA--  979

seq1  TTCAGCAATAAAATTCCTAGGCATTTTGTGAAGTTTCGGCATCTGTGTGC  1050
       ||||| |||||  | ||||||| |||||| ||||   |||||   | | 
seq2  CTCAGC-ATAAA--TTCTAGGCA-TTTGTG-AGTT--CGCATC---GGGG  1019

seq1  CACCATTCTGTCACCCCAACTGGGTTTATAGTAGATGCAATCATCTC  1097
      || |||||||||||||| ||||||||   ||| ||||| ||||||||
seq2  CA-CATTCTGTCACCCC-ACTGGGTT--AAGT-GATGC-ATCATCTC  1060