BAC Information

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BAC

Clone NameB6Ng01-047E05
Chromosome10 (Build37)
Map Location 93,996,129 - 94,137,290
singlet/doubletdoublet
Overlap geneTmcc3
Upstream geneAmdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955
Downstream geneEG667315, 4921537D05Rik, Plxnc1, Cradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047E05.bB6Ng01-047E05.g
ACCDH872176DH872177
length1,090322
definitionDH872176|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E05, 5' end.DH872177|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,136,151 - 94,137,290)(93,996,129 - 93,996,450)
sequence
gaattcacccctgttgggatagaccactagctactccaaaatggaaagag
tccatgttattgaccaggtatctgatttgtcttgagtaatactgcagtat
tgagaacacagtgtagtcctctgctcctatcaggttccttagaaacaggt
gtagatatggattggcttttgtagctgggaatttatgttgtgactcacat
atagcctcctgtgcaaacatgacaactcatgtgttgtcttagtgacagtt
ctagagtaggccatgacaaacacttgcttaacaccaactgatagaatcct
ttgtcagtatgaatttttctgtttctctttcatgatggatgttctagtca
gaatgaacctgtcattagccgctaagcaagacaggcaccatcagggacag
aatcctaggttgatgcaccttcagggtatcctttctttatttgcagctaa
ggctctatggcttaagagcattccttggggcgtgtctactcattagtttt
tgctctgcaagctccagaatgtgtctactatagcctcttttaaaactatg
accttaaactgaatctgctcagggatgtactccttaactaagcctgcccc
ttgctcagtcctgggccaatccttacgtgaatgtgtataggctctcggaa
tacaattcccatgcttgctttattggaagatgtttggaaagaacaccttt
gttcgcccttatctattgcaagtaatctttctctactctttttatatatt
gactgtgattattttggcttgcactcaatgatatgtgaccccattatatt
tgactacatatataaaaaagatcctcactccatgtgaccacatatctcat
ttctatacctctcttccttacctcatgtctctgacctttcagtcttctct
gctgagaagtctatacaggatgatcatgcatcaacactgactacacagta
catgagactgaagtgaattagctcttgagtcatctgtgtgatgtgttgct
ggcagaacctgcagtacattctctgaaccgacaggagagagatgctctgc
tagcagacctgacggactgatgatcttagccactacacac
ctcatggtaactaaatccttccgattcggaagcggggagggtcatttggg
gaaaagttaagatccctaacttcccatggaacctctaccaatctccctcc
ttgtttgcatcagattctggttaccgccccaggtgcagctgtgtgggtgt
ggtctctcctctgcttactcccagctctccatccctcaagcacggcttta
cccactggtaaaccaatccaatccaatgtgtttgcatcatactattggtc
atacaagtagtatctctagaaacttgccctttctcatcattgtggagtgt
gtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_94136151_94137290
seq2: B6Ng01-047E05.b_44_1133 (reverse)

seq1  GTGTGTAGTTGGCTAAGAATCCATCACGTGTCTGTTCACGTGCTTGCTTT  50
      |||||||| |||||||||   |||||   ||| | ||| ||   |||  |
seq2  GTGTGTAG-TGGCTAAGA--TCATCA---GTCCG-TCAGGT--CTGC--T  39

seq1  AGCAGAGCATCCTCTCTCCTGGGTCCGCTTCAGGAGAATGGTACTGCACG  100
      |||||||||| ||||||||||    || |||| |||||| |||||||| |
seq2  AGCAGAGCAT-CTCTCTCCTG---TCGGTTCA-GAGAAT-GTACTGCAGG  83

seq1  TGTCTGCCCCAGCAAAACACCATCAACACAGATGACTTTCCAAAGAGCCC  150
      | ||||  ||||||| ||| |    ||||||||||||     ||||||  
seq2  T-TCTG--CCAGCAACACATC----ACACAGATGACT----CAAGAGC--  120

seq1  TTAAATTTCCACTTCAGTTTCTCATTGTTACTGTTGTTAGTTTCAAGTGT  200
       |||   | ||||||||  ||||||   ||||||   ||||    |||| 
seq2  -TAA---TTCACTTCAG--TCTCAT--GTACTGT--GTAGT---CAGTG-  156

seq1  TTGATGGCATGATCATCCTGTATAGACTTTCTCAGCAGAGAAGACTGGAA  250
      ||||| ||||||||||||||||||||| ||||||||||||||||||| ||
seq2  TTGAT-GCATGATCATCCTGTATAGAC-TTCTCAGCAGAGAAGACTGAAA  204

seq1  GGTCAGAGACAATGAGGTAAGGAAGAGAGGTATAGAAATGGAGATATGTG  300
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  GGTCAGAGAC-ATGAGGTAAGGAAGAGAGGTATAGAAAT-GAGATATGTG  252

seq1  GTCACATGGAGTGAGGATCTTTTTTATTATATTGTAGTCAAATATAATGG  350
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  GTCACATGGAGTGAGGATCTTTTTTA-TATA-TGTAGTCAAATATAATGG  300

seq1  GGTCACATATCATTGAGTGCAAGCCAAAATAATCACAGTCAATATATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATATCATTGAGTGCAAGCCAAAATAATCACAGTCAATATATAAA  350

seq1  AAGAGTAGAGAAAGATTACTTGCAATAGATAAGGGCGAACAAAGGTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGAGAAAGATTACTTGCAATAGATAAGGGCGAACAAAGGTGTTC  400

seq1  TTTCCAAACATCTTCCAATAAAGCAAGCATGGGAATTGTATTCCGAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAACATCTTCCAATAAAGCAAGCATGGGAATTGTATTCCGAGAGC  450

seq1  CTATACACATTCACGTAAGGATTGGCCCAGGACTGAGCAAGGGGCAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACACATTCACGTAAGGATTGGCCCAGGACTGAGCAAGGGGCAGGCT  500

seq1  TAGTTAAGGAGTACATCCCTGAGCAGATTCAGTTTAAGGTCATAGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAGGAGTACATCCCTGAGCAGATTCAGTTTAAGGTCATAGTTTTA  550

seq1  AAAGAGGCTATAGTAGACACATTCTGGAGCTTGCAGAGCAAAAACTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCTATAGTAGACACATTCTGGAGCTTGCAGAGCAAAAACTAATG  600

seq1  AGTAGACACGCCCCAAGGAATGCTCTTAAGCCATAGAGCCTTAGCTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACACGCCCCAAGGAATGCTCTTAAGCCATAGAGCCTTAGCTGCAA  650

seq1  ATAAAGAAAGGATACCCTGAAGGTGCATCAACCTAGGATTCTGTCCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAGGATACCCTGAAGGTGCATCAACCTAGGATTCTGTCCCTGA  700

seq1  TGGTGCCTGTCTTGCTTAGCGGCTAATGACAGGTTCATTCTGACTAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTGTCTTGCTTAGCGGCTAATGACAGGTTCATTCTGACTAGAAC  750

seq1  ATCCATCATGAAAGAGAAACAGAAAAATTCATACTGACAAAGGATTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCATGAAAGAGAAACAGAAAAATTCATACTGACAAAGGATTCTAT  800

seq1  CAGTTGGTGTTAAGCAAGTGTTTGTCATGGCCTACTCTAGAACTGTCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTGTTAAGCAAGTGTTTGTCATGGCCTACTCTAGAACTGTCACT  850

seq1  AAGACAACACATGAGTTGTCATGTTTGCACAGGAGGCTATATGTGAGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACACATGAGTTGTCATGTTTGCACAGGAGGCTATATGTGAGTCA  900

seq1  CAACATAAATTCCCAGCTACAAAAGCCAATCCATATCTACACCTGTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAAATTCCCAGCTACAAAAGCCAATCCATATCTACACCTGTTTCT  950

seq1  AAGGAACCTGATAGGAGCAGAGGACTACACTGTGTTCTCAATACTGCAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCTGATAGGAGCAGAGGACTACACTGTGTTCTCAATACTGCAGT  1000

seq1  ATTACTCAAGACAAATCAGATACCTGGTCAATAACATGGACTCTTTCCAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCAAGACAAATCAGATACCTGGTCAATAACATGGACTCTTTCCAT  1050

seq1  TTTGGAGTAGCTAGTGGTCTATCCCAACAGGGGTGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTAGCTAGTGGTCTATCCCAACAGGGGTGAATTC  1090

seq1: chr10_93996129_93996450
seq2: B6Ng01-047E05.g_72_393

seq1  CTCATGGTAACTAAATCCTTCCGATTCGGAAGCGGGGAGGGTCATTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTAACTAAATCCTTCCGATTCGGAAGCGGGGAGGGTCATTTGGG  50

seq1  GAAAAGTTAAGATCCCTAACTTCCCATGGAACCTCTACCAATCTCCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTAAGATCCCTAACTTCCCATGGAACCTCTACCAATCTCCCTCC  100

seq1  TTGTTTGCATCAGATTCTGGTTACCGCCCCAGGTGCAGCTGTGTGGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCATCAGATTCTGGTTACCGCCCCAGGTGCAGCTGTGTGGGTGT  150

seq1  GGTCTCTCCTCTGCTTACTCCCAGCTCTCCATCCCTCAAGCACGGCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCCTCTGCTTACTCCCAGCTCTCCATCCCTCAAGCACGGCTTTA  200

seq1  CCCACTGGTAAACCAATCCAATCCAATGTGTTTGCATCATACTATTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGGTAAACCAATCCAATCCAATGTGTTTGCATCATACTATTGGTC  250

seq1  ATACAAGTAGTATCTCTAGAAACTTGCCCTTTCTCATCATTGTGGAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTAGTATCTCTAGAAACTTGCCCTTTCTCATCATTGTGGAGTGT  300

seq1  GTGTGTGTGTGTGTGTGTGTGT  322
      ||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGT  322