BAC Information

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BAC

Clone NameB6Ng01-047H14
Chromosome10 (Build37)
Map Location 99,274,815 - 99,387,373
singlet/doubletdoublet
Overlap geneLOC100042246
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl
Downstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047H14.bB6Ng01-047H14.g
ACCDH872322DH872323
length728663
definitionDH872322|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H14, 5' end.DH872323|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,274,815 - 99,275,542)(99,386,711 - 99,387,373)
sequence
gaattcaaagagttggataaagcaactcaatgtctgttataaacacaggt
tgctaaagggagaggcattagtaataatggcatgcgcagcgggaacccct
gcacacagcaccataaatctgaccaactaatgtcagccagacacaaaaca
gcagcagaaacaaaggacttaaaaaaaaacttgctgaaaaagggtcagtg
gggaaccatgaatatttcgaaggaatagtaatggacggggccagacagtc
tttctacatgaccagaacattacagtatggaagcactcaaataaaaatga
aatagtagatgttaaaatgcattctgggtgtttactggaaggtggttgat
gttaatccttttaaatctctgttcagcattaaagctcaagagaacccctt
catgtggcggcaaggagtcatttttcaaaggcggtgtaatggaaggataa
tcctaatatttgttgcttgatttttgagtctccattcagcccacgtgaaa
ttgggactcactttgcaggttgattatgaaacattataaacctcaaattt
tagtctaagcgtacataaacacaattcccaattacccatcacgtggggct
gaacagcaggaatgtgaagcaaggttcaactccaattataatgtcgccgt
ttccttgcagttgtggtgctttctgggtgtctttgaactttgaagtttct
ttctccttccttccttccttccttcctt
gaattccagaactcttggactgaggcctggctgaataaagcagcagaagg
actctgaagattttgtctggatgtactgggatgaaacagaggaaaggaaa
tacaacacacgattgggaagggattaagagaattgttagacaatatttgt
cagcaatatatttgaaagccaaaagaactgagttccttcccatgagaaat
tgaatgattttctaggaagttttgttttgtttgttttgttattccagaca
cggcttccctgtgcaacgtaactgaaataggcaacctaagctaacagtaa
tcagaacacgttaggacagtactataaagacaaatcgttaaatggtaaaa
tccttaagcaacggcaattattcttttatttaaaccacttttaattcttg
ggaaagatgtgacattcattagactggtaggagactacagtaacacaaag
taaatgaattcaataatataaagtttaaaaataaatgtagttggcaacta
aatagtatatcattaaatgttcttctagctgggctgccttgtcaggtctc
agtgggaggggaagcacctatcctcctacagaattgaaatgccaaggtgg
aggagatactcagagggcccccacccactcagaggagaagtggggagaag
ggggaggattgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99274815_99275542
seq2: B6Ng01-047H14.b_47_774

seq1  GAATTCAAAGAGTTGGATAAAGCAACTCAATGTCTGTTATAAACACAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGTTGGATAAAGCAACTCAATGTCTGTTATAAACACAGGT  50

seq1  TGCTAAAGGGAGAGGCATTAGTAATAATGGCATGCGCAGCGGGAACCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGGGAGAGGCATTAGTAATAATGGCATGCGCAGCGGGAACCCCT  100

seq1  GCACACAGCACCATAAATCTGACCAACTAATGTCAGCCAGACACAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGCACCATAAATCTGACCAACTAATGTCAGCCAGACACAAAACA  150

seq1  GCAGCAGAAACAAAGGACTTAAAAAAAAACTTGCTGAAAAAGGGTCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAAACAAAGGACTTAAAAAAAAACTTGCTGAAAAAGGGTCAGTG  200

seq1  GGGAACCATGAATATTTCGAAGGAATAGTAATGGACGGGGCCAGACAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCATGAATATTTCGAAGGAATAGTAATGGACGGGGCCAGACAGTC  250

seq1  TTTCTACATGACCAGAACATTACAGTATGGAAGCACTCAAATAAAAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACATGACCAGAACATTACAGTATGGAAGCACTCAAATAAAAATGA  300

seq1  AATAGTAGATGTTAAAATGCATTCTGGGTGTTTACTGGAAGGTGGTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGATGTTAAAATGCATTCTGGGTGTTTACTGGAAGGTGGTTGAT  350

seq1  GTTAATCCTTTTAAATCTCTGTTCAGCATTAAAGCTCAAGAGAACCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCCTTTTAAATCTCTGTTCAGCATTAAAGCTCAAGAGAACCCCTT  400

seq1  CATGTGGCGGCAAGGAGTCATTTTTCAAAGGCGGTGTAATGGAAGGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGCGGCAAGGAGTCATTTTTCAAAGGCGGTGTAATGGAAGGATAA  450

seq1  TCCTAATATTTGTTGCTTGATTTTTGAGTCTCCATTCAGCCCACGTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATATTTGTTGCTTGATTTTTGAGTCTCCATTCAGCCCACGTGAAA  500

seq1  TTGGGACTCACTTTGCAGGTTGATTATGAAACATTATAAACCTCAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTCACTTTGCAGGTTGATTATGAAACATTATAAACCTCAAATTT  550

seq1  TAGTCTAAGCGTACATAAACACAATTCCCAATTACCCATCACGTGGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAAGCGTACATAAACACAATTCCCAATTACCCATCACGTGGGGCT  600

seq1  GAACAGCAGGAATGTGAAGCAAGGTTCAACTCCAATTATAATGTCGCCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAGGAATGTGAAGCAAGGTTCAACTCCAATTATAATGTCGCCGT  650

seq1  TTCCTTGCAGTTGTGGTGCTTTCTGGGTGTCTTTGAACTTTGAAGTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCAGTTGTGGTGCTTTCTGGGTGTCTTTGAACTTTGAAGTTTCT  700

seq1  TTCTCCTTCCTTCCTTCCTTCCTTCCTT  728
      ||||||||||||||||||||||||||||
seq2  TTCTCCTTCCTTCCTTCCTTCCTTCCTT  728

seq1: chr10_99386711_99387373
seq2: B6Ng01-047H14.g_67_729 (reverse)

seq1  TACAATCCTCCCCCTTCTCCCCACTTCTCCTCTGAGTGGGTGGGGGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCCTCCCCCTTCTCCCCACTTCTCCTCTGAGTGGGTGGGGGCCCT  50

seq1  CTGAGTATCTCCTCCACCTTGGCATTTCAATTCTGTAGGAGGATAGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATCTCCTCCACCTTGGCATTTCAATTCTGTAGGAGGATAGGTGC  100

seq1  TTCCCCTCCCACTGAGACCTGACAAGGCAGCCCAGCTAGAAGAACATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCCCACTGAGACCTGACAAGGCAGCCCAGCTAGAAGAACATTTA  150

seq1  ATGATATACTATTTAGTTGCCAACTACATTTATTTTTAAACTTTATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATACTATTTAGTTGCCAACTACATTTATTTTTAAACTTTATATTA  200

seq1  TTGAATTCATTTACTTTGTGTTACTGTAGTCTCCTACCAGTCTAATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCATTTACTTTGTGTTACTGTAGTCTCCTACCAGTCTAATGAAT  250

seq1  GTCACATCTTTCCCAAGAATTAAAAGTGGTTTAAATAAAAGAATAATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATCTTTCCCAAGAATTAAAAGTGGTTTAAATAAAAGAATAATTGC  300

seq1  CGTTGCTTAAGGATTTTACCATTTAACGATTTGTCTTTATAGTACTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCTTAAGGATTTTACCATTTAACGATTTGTCTTTATAGTACTGTCC  350

seq1  TAACGTGTTCTGATTACTGTTAGCTTAGGTTGCCTATTTCAGTTACGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTGTTCTGATTACTGTTAGCTTAGGTTGCCTATTTCAGTTACGTTG  400

seq1  CACAGGGAAGCCGTGTCTGGAATAACAAAACAAACAAAACAAAACTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAAGCCGTGTCTGGAATAACAAAACAAACAAAACAAAACTTCCT  450

seq1  AGAAAATCATTCAATTTCTCATGGGAAGGAACTCAGTTCTTTTGGCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCATTCAATTTCTCATGGGAAGGAACTCAGTTCTTTTGGCTTTC  500

seq1  AAATATATTGCTGACAAATATTGTCTAACAATTCTCTTAATCCCTTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTGCTGACAAATATTGTCTAACAATTCTCTTAATCCCTTCCCA  550

seq1  ATCGTGTGTTGTATTTCCTTTCCTCTGTTTCATCCCAGTACATCCAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTGTTGTATTTCCTTTCCTCTGTTTCATCCCAGTACATCCAGACA  600

seq1  AAATCTTCAGAGTCCTTCTGCTGCTTTATTCAGCCAGGCCTCAGTCCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCAGAGTCCTTCTGCTGCTTTATTCAGCCAGGCCTCAGTCCAAG  650

seq1  AGTTCTGGAATTC  663
      |||||||||||||
seq2  AGTTCTGGAATTC  663