BAC Information

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BAC

Clone NameB6Ng01-047H15
Chromosome17 (Build37)10 (Build37)
Map Location 79,168,333 - 79,169,288104,054,043 - 104,054,698
singlet/doubletsingletsinglet
Overlap geneHeatr5b
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn
Downstream gene2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047H15.bB6Ng01-047H15.g
ACCDH872324DH872325
length946880
definitionDH872324|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H15, 5' end.DH872325|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,168,333 - 79,169,288)(104,054,043 - 104,054,698)
sequence
gaattcttccttgtgtttagtgtttattggacacttacttcaaatgtcgg
tttaataacattgaagtgatgggggccgggccaagcttgggaaatgattg
gaaaatgtgggtatgtgatacatgcctttcattgcaacactcaggagaca
gacacaggccgatctagatgagtttgaggccaacctggtctacatagtga
gttctaggctgtccagagtaacagtgagaccctgtctcaaacacaaaaca
acccctagcccctaaaaaaaaaccccttgggaacatgaatgtggtgttta
taacccaagctgtaatttgcctactctagagttgtgctctagtgtcttgt
cacgtgtgaatgaggtagacgggccctgcctgtcaggagctctccctgta
caggcaagtgcatcagcttctcagtaggcacaaaggggcggtgcctgctg
aggaaagaggagagaatgctttcacaactttagtagtgcagttgtttttc
ttgcttgttttcttccttttccctgttttaattaatgttttcagaactgt
gttatcacttgtacagagcctaaatataagtgttaaaaaaacaaacaaac
tcaacaaggaattaccctgacatgctttaggaaagttgatattacatgtc
tttttaaaaatgtcacaaactacaaaggacacagataaaacatgtggcaa
gtacattttatttttagattggctatctgttgtaattgtgagattgctaa
gtatcacttaaagcccgtgtaggagtagattgggggatatttatggatat
cctttctctggccacctccctgctctcagtcctttcctttgaatgctgtt
tgattgtgtctagtagcctgggaaagagtcactagacaggagtgctctgt
gctgcagagactttgtgaagagtgccagagtactcaggaagctact
gaattccacataaaaccagagacactgaaacttacagaggagaaagtggg
gaagagccttgaagatatgggcacaggggaaagattcctgaacagaatag
caatggcttgtgctgtaagatcaagaatcgacaaatgggacctcataaaa
ctgcaaagcttctgtaaggcaaaggacatcgtcaataagacaaaacggca
atcaacaaacagattgtgaaaagatctttacctatcctatatccgatagg
gggctaatatccaatatacacaaaaaactcaagaagttggactccaggaa
accaaataatcctattaaaaatggagtactgggctaaacaaagaattctc
aactgaggaataccgaagggctgagaagcacctaaaaaaatgttcaacat
ccttaatcatcagggaaacgcaaatcaaaacaaccctgagatcccacctc
acacctgtcagaatggctaagatcaaaaattcagatgacagcagtactgg
cgtggatgtggagaaagaggaacactcctccattgctggtgggattgcaa
gcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattgg
acacagttctactggaagatccaccaataccactcctgggcatataccca
gaagatgctccaacttgtaataaggacacatgctccactatgttcatagc
agccttatttataatagccagaagctggaaagaacccagatgtcactcaa
cagaggaatggatacagaaaatgtggtacatttatacaatggagtactat
gcagccattaaaaagaatgaatttatgaaattcttaggcaatggatggac
ctgaagggtatcatcctgagtgaggaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79168333_79169288
seq2: B6Ng01-047H15.b_45_990 (reverse)

seq1  AGTAGGCTTCCCTGAGTTACTCTGGCACCTCTTTCACAAAGTCTCTCGCA  50
      |||| |||| |||||| |||||||||| ||| |||||||||||||| |||
seq2  AGTA-GCTT-CCTGAG-TACTCTGGCA-CTC-TTCACAAAGTCTCT-GCA  44

seq1  GCACAGAGCACCTTCCTGTCTAGTGACTCTTTCCCAGGCTTACTAGACAC  100
      |||||||||||  |||||||||||||||||||||||||| ||||||||||
seq2  GCACAGAGCAC--TCCTGTCTAGTGACTCTTTCCCAGGC-TACTAGACAC  91

seq1  AATCAAACAGCATTCAAAGGAAAGGACTGAGAGCAGGGAGGTGGCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACAGCATTCAAAGGAAAGGACTGAGAGCAGGGAGGTGGCCAGAG  141

seq1  AAAGGATATCCATAAATATCCCCCAATCTACCTCCTACACGGGCCTTAAG  200
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  AAAGGATATCCATAAATATCCCCCAATCTA-CTCCTACACGGGCTTTAAG  190

seq1  TGATACTTAGCAATCTCACAATTACAACAGATAGCCAATCTAAAAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTAGCAATCTCACAATTACAACAGATAGCCAATCTAAAAATAAA  240

seq1  ATGTACTTGCCACATGTTTTATCTGTGTCCTTTGTAGTTTGTGACATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTGCCACATGTTTTATCTGTGTCCTTTGTAGTTTGTGACATTTT  290

seq1  TAAAAAGACATGTAATATCAACTTTCCTAAAGCATGTCAGGGTAATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGACATGTAATATCAACTTTCCTAAAGCATGTCAGGGTAATTCCT  340

seq1  TGTTGAGTTTGTTTGTTTTTTTAACACTTATATTTAGGCTCTGTACAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTTTGTTTGTTTTTTTAACACTTATATTTAGGCTCTGTACAAGT  390

seq1  GATAACACAGTTCTGAAAACATTAATTAAAACAGGGAAAAGGAAGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACACAGTTCTGAAAACATTAATTAAAACAGGGAAAAGGAAGAAAAC  440

seq1  AAGCAAGAAAAACAACTGCACTACTAAAGTTGTGAAAGCATTCTCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAAAAACAACTGCACTACTAAAGTTGTGAAAGCATTCTCTCCTC  490

seq1  TTTCCTCAGCAGGCACCGCCCCTTTGTGCCTACTGAGAAGCTGATGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCAGCAGGCACCGCCCCTTTGTGCCTACTGAGAAGCTGATGCACT  540

seq1  TGCCTGTACAGGGAGAGCTCCTGACAGGCAGGGCCCGTCTACCTCATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTACAGGGAGAGCTCCTGACAGGCAGGGCCCGTCTACCTCATTCA  590

seq1  CACGTGACAAGACACTAGAGCACAACTCTAGAGTAGGCAAATTACAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGACAAGACACTAGAGCACAACTCTAGAGTAGGCAAATTACAGCTT  640

seq1  GGGTTATAAACACCACATTCATGTTCCCAAGGGGTTTTTTTTTAGGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATAAACACCACATTCATGTTCCCAAGGGGTTTTTTTTTAGGGGCT  690

seq1  AGGGGTTGTTTTGTGTTTGAGACAGGGTCTCACTGTTACTCTGGACAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGTTTTGTGTTTGAGACAGGGTCTCACTGTTACTCTGGACAGCC  740

seq1  TAGAACTCACTATGTAGACCAGGTTGGCCTCAAACTCATCTAGATCGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCACTATGTAGACCAGGTTGGCCTCAAACTCATCTAGATCGGCC  790

seq1  TGTGTCTGTCTCCTGAGTGTTGCAATGAAAGGCATGTATCACATACCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTCTCCTGAGTGTTGCAATGAAAGGCATGTATCACATACCCAC  840

seq1  ATTTTCCAATCATTTCCCAAGCTTGGCCCGGCCCCCATCACTTCAATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAATCATTTCCCAAGCTTGGCCCGGCCCCCATCACTTCAATGTT  890

seq1  ATTAAACCGACATTTGAAGTAAGTGTCCAATAAACACTAAACACAAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACCGACATTTGAAGTAAGTGTCCAATAAACACTAAACACAAGGAA  940

seq1  GAATTC  956
      ||||||
seq2  GAATTC  946

seq1: chr10_104054043_104054698
seq2: B6Ng01-047H15.g_70_727 (reverse)

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  50
      ||| ||||||||||| ||||||||||| || ||||||| |||||| ||| 
seq2  TGGAGCATCTTCTGGGTATATGCCCAGGAGTGGTATTGGTGGATCTTCCA  50

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  100
      |||| ||| ||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGAACTGTGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  100

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  150
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAGCAATGGAGGAGTGTTCCTCTTTC  150

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  200
      ||||||||| |||||| | ||||||||| |||||||||||||||||||||
seq2  TCCACATCCACGCCAGTA-CTGCTGTCATCTGAATTTTTGATCTTAGCCA  199

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  250
      ||||||| |||||||||||| ||||||||||||||||||||||| |||||
seq2  TTCTGACAGGTGTGAGGTGGGATCTCAGGGTTGTTTTGATTTGCGTTTCC  249

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  300
      ||||||||||||||||||||||||||||| ||||||||||| ||| ||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTTAGGTGCTTCTCAGCCCTTCG  299

seq1  GTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAA  350
      ||||||||||| ||||||||||||||| ||  | |  | ||| |||||||
seq2  GTATTCCTCAGTTGAGAATTCTTTGTTTAGCCCAGTACTCCA-TTTTTAA  348

seq1  TAGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATG  400
      |||| ||||||| ||| ||| |||||| ||||||||||| ||| | ||| 
seq2  TAGGATTATTTGGTTTCCTGGAGTCCAACTTCTTGAGTTTTTTGTGTATA  398

seq1  TTGGATATTAGTCCCCTATCTGAATTAGGATAGGTAAAGATCCTTTCTCA  450
      ||||||||||| |||||||| ||  ||||||||||||||||| |||| ||
seq2  TTGGATATTAGCCCCCTATCGGATATAGGATAGGTAAAGATCTTTTCACA  448

seq1  ATC----TGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTG  496
      |||    ||||| | | | |||||||||||||||| |||| |||||||| 
seq2  ATCTGTTTGTTGATTGCCGTTTTGTCTTATTGACGATGTCCTTTGCCTTA  498

seq1  CAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAACTCTCTATCTTAC  546
      ||||||||||||| |||||||||||||||||| || | |||  |||||||
seq2  CAGAAGCTTTGCAGTTTTATGAGGTCCCATTTGTCGATTCTTGATCTTAC  548

seq1  AGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATAT  596
      |||||||||||||||| |||| ||||||||| |||||||||| |||||||
seq2  AGCACAAGCCATTGCTATTCTGTTCAGGAATCTTTCCCCTGTGCCCATAT  598

seq1  CTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTTTCAGTGTCTCTGGT  646
      |||| ||||| ||||| ||||| |||||| ||||||||||||||||||||
seq2  CTTCAAGGCTCTTCCCCACTTTCTCCTCTGTAAGTTTCAGTGTCTCTGGT  648

seq1  TTTATGTGGA  656
      ||||||||||
seq2  TTTATGTGGA  658