BAC Information

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BAC

Clone NameB6Ng01-047I09
Chromosome10 (Build37)
Map Location 103,824,308 - 103,967,780
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047I09.bB6Ng01-047I09.g
ACCDH872360DH872361
length1,0461,095
definitionDH872360|Mus musculus domesticus DNA, BAC clone: B6Ng01-047I09, 5' end.DH872361|Mus musculus domesticus DNA, BAC clone: B6Ng01-047I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,824,308 - 103,825,358)(103,966,681 - 103,967,780)
sequence
gaattccagatcatcataaagcgatggcaagatctataaatgctgcacac
ttgtgagcagtgtatttgcaaatctgtctgtctaacaaccccctccccac
ccctagctactcacacattcatgcccagactaagtgaaatgctgctttgg
aagaataattttgcagctatcatcctttagaaccaaaaccaagctataat
attagcttgcttgtgctcccacaaaatcaccacaggttgtgtaacataaa
caaaagaaatctagacctaagttctggatctggggatctaaactcagggc
atcagcattatcagttttgggcaagaaatgttcttgttctctcctcaaca
cccatcatttgttgaggacttagaagttcccatgcattactgatcctttg
ggaacaaggccctgcacttatgacttcttatccctttaattactcctgct
gtacgcgaaacatacccacattagttatggtttccatacaaatttgacat
atgggcacaaaagcttattctcttgatatagatgatgaacccgttgtgtc
agagtttagaaagcagagacaggaaagtcagtcagtccggtcaacatggt
tggctaccctgatctacacagtggcatctcgagtgtcaagacaataacaa
ttcaaagagtaggatgtgagatttgagaggaatggtgcgggagggttaag
aattttcttttagatatggcttaaagtatgcaagtttgcaaatgcaaata
caatacattctagtaccataaaggaaaaaaagtaaaaatagcaggcaagt
gttgaatatggaaacagtttacttaacaaaccttgtgtgccagggttttt
ataacatatggagggacagattgaatttcagccaaattataccttttcag
cttcaacatatgggttcaaccattggtttttgtgtcttttttttttttgc
aaattcaaaaaactcgcttaagaaaacaccctagcaaaataaaaatcacc
cgaacctttaattcaggtttaatatatttatattagcaatatcaga
gaattcactttcttaattgcttctcagaaatactgtttgttatgttcaac
gcatataaattatgttttaacttaactatttttaccccagtcccatgaag
aaacatgggtaaaatcatgacaaggaagtttgcctgtatgtcatcatatg
atccatatattgatttctgatattatttcaataaaaatacgctactcaaa
tgaaggtttggggtgcaattcatacttactagacttttacaagtcccttt
ctcacccatggccaagcagtgcaaagttactgttctatcagattctctgc
ttttatatttttgtttatttccaagtcatattgtaaaaaaggttttgata
ttcatttttattattccaattatgtgtgtgtatgtgaagatgcatgcaga
ttcccaaggatgtaagacctaacattctttcacctggatctgtagctaca
ggtggttgtgagcagcccaatgagagtgctggagactgaccccaggttcc
ctgtaagaaaggtaggtagatactgtgattcactgagccatttctacagc
tctctaggctatttcttgtatgtaaggtgatcgttttctaactaccctgc
cataagagaagaaaccaatattgttctgttgctctatacttctaaaacct
acaggtaaaaaaaggtacagtggttatatatgaaaaaattgggacaataa
agatttgggtttcaggaatggaatccagccatgtttcctaacctaaaaat
atggcagtgaatttgagatttcacaattggtagagatcaaaagaactttg
acaaataagataaatataatagctttctcttagtataaaagtattaaatc
acaaaaaatttatttgaactacagaggctaataactatgctagtaaagac
tccagaaagtaattaaagaataatattcttgtcccattcccttattgtag
agtttggataacacagaattgtcttttaaatattgatgatatttgaaaat
attactctcttacttgtttcttctctgtctcctgaagagttgactatcct
tctaggggctcttttttataatcagtttccactgtatgggtgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103824308_103825358
seq2: B6Ng01-047I09.b_44_1088

seq1  GAATTCCAGATCATCATAAAGCGATGGCAAGATCTATAAATGCTGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATCATCATAAAGCGATGGCAAGATCTATAAATGCTGCACAC  50

seq1  TTGTGAGCAGTGTATTTGCAAATCTGTCTGTCTAACAACCCCCTCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCAGTGTATTTGCAAATCTGTCTGTCTAACAACCCCCTCCCCAC  100

seq1  CCCTAGCTACTCACACATTCATGCCCAGACTAAGTGAAATGCTGCTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCTACTCACACATTCATGCCCAGACTAAGTGAAATGCTGCTTTGG  150

seq1  AAGAATAATTTTGCAGCTATCATCCTTTAGAACCAAAACCAAGCTATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAATTTTGCAGCTATCATCCTTTAGAACCAAAACCAAGCTATAAT  200

seq1  ATTAGCTTGCTTGTGCTCCCACAAAATCACCACAGGTTGTGTAACATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTTGCTTGTGCTCCCACAAAATCACCACAGGTTGTGTAACATAAA  250

seq1  CAAAAGAAATCTAGACCTAAGTTCTGGATCTGGGGATCTAAACTCAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAATCTAGACCTAAGTTCTGGATCTGGGGATCTAAACTCAGGGC  300

seq1  ATCAGCATTATCAGTTTTGGGCAAGAAATGTTCTTGTTCTCTCCTCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATTATCAGTTTTGGGCAAGAAATGTTCTTGTTCTCTCCTCAACA  350

seq1  CCCATCATTTGTTGAGGACTTAGAAGTTCCCATGCATTACTGATCCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATTTGTTGAGGACTTAGAAGTTCCCATGCATTACTGATCCTTTG  400

seq1  GGAACAAGGCCCTGCACTTATGACTTCTTATCCCTTTAATTACTCCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAGGCCCTGCACTTATGACTTCTTATCCCTTTAATTACTCCTGCT  450

seq1  GTACGCGAAACATACCCACATTAGTTATGGTTTCCATACAAATTTGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCGAAACATACCCACATTAGTTATGGTTTCCATACAAATTTGACAT  500

seq1  ATGGGCACAAAAGCTTATTCTCTTGATATAGATGATGAACCCGTTGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCACAAAAGCTTATTCTCTTGATATAGATGATGAACCCGTTGTGTC  550

seq1  AGAGTTTAGAAAGCAGAGACAGGAAAGTCAGTCAGTCCGGTCAACATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTAGAAAGCAGAGACAGGAAAGTCAGTCAGTCCGGTCAACATGGT  600

seq1  TGGCTACCCTGATCTACACAGTGGCATCTCGAGTGTCAAGACAATAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACCCTGATCTACACAGTGGCATCTCGAGTGTCAAGACAATAACAA  650

seq1  TTCAAAGAGTAGGATGTGAGATTTGAGAGGAATGGTGCGGGAGGGTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAGTAGGATGTGAGATTTGAGAGGAATGGTGCGGGAGGGTTAAG  700

seq1  AATTTTCTTTTAGATATGGCTTAAAGTATGCAAGTTTGCAAATGCAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTTTAGATATGGCTTAAAGTATGCAAGTTTGCAAATGCAAATA  750

seq1  CAATACATTCTAGTACCAATAAAGGAAAAAAAGTAAAAATAGCAGGCAAG  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAATACATTCTAGTACC-ATAAAGGAAAAAAAGTAAAAATAGCAGGCAAG  799

seq1  TGTTGAATATGGAAACAGTTTACTTAACAAACCTTGTGTGCCAAGTGTTT  850
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  TGTTGAATATGGAAACAGTTTACTTAACAAACCTTGTGTGCC-AGGGTTT  848

seq1  TTATAACATATGTA-GGACAGAATGAATTTCAGCAAAATATATA-CTTTT  898
      |||||||||||| | ||||||| ||||||||||| |||| |||| |||||
seq2  TTATAACATATGGAGGGACAGATTGAATTTCAGCCAAAT-TATACCTTTT  897

seq1  CAGCTTCAACATATGGGTTCAACATTTGTTTTTTGTGTCTTTTTTTTTTT  948
      |||||||||||||||||||||||  ||| ||||||||||  |||||||||
seq2  CAGCTTCAACATATGGGTTCAACCATTGGTTTTTGTGTC--TTTTTTTTT  945

seq1  TTTGTAAATTCTATAATACTTGTTTAAGTAAAACACACTAGCAAAAT-AA  997
      |||| |||||| | || ||| | ||||| ||||||| |||||||||| ||
seq2  TTTGCAAATTC-AAAAAACTCGCTTAAG-AAAACACCCTAGCAAAATAAA  993

seq1  AATCACAACAGAGCATTAATATCATGTTTTAATATATTTATA-TAGCAAT  1046
      ||||||  | || | || |  ||| | ||||||||||||||| |||||||
seq2  AATCAC--CCGAACCTTTAATTCA-GGTTTAATATATTTATATTAGCAAT  1040

seq1  ATCAG  1051
      |||||
seq2  ATCAG  1045

seq1: chr10_103966681_103967780
seq2: B6Ng01-047I09.g_69_1163 (reverse)

seq1  GTTCACACAATACAAGTGGAAAACTGATATAAAAAAAAGAGCCCCAAGAA  50
      |||||| | |||| ||||| |||||||| || ||||||||||||| ||||
seq2  GTTCAC-CCATAC-AGTGG-AAACTGAT-TATAAAAAAGAGCCCCTAGAA  46

seq1  GGTATAGTCAAACTCTTTCAGGAAGACAGAGAAGAAACAAAGTTAAGAGA  100
      || |||||| ||||| |||||| |||||||||||||||||   |||||||
seq2  GG-ATAGTC-AACTC-TTCAGG-AGACAGAGAAGAAACAA--GTAAGAGA  90

seq1  GTAAATATTTTCAAATATCATCAATATTTAAAAGACAATTCTGTGTTAT-  149
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GT-AATATTTTCAAATATCATCAATATTTAAAAGACAATTCTGTGTTATC  139

seq1  CAAACTCTACAAT-AGGAAATGGGACAAGAATATGTATCTTTAATTAC-T  197
      ||||||||||||| ||| ||||||||||||||||   ||||||||||| |
seq2  CAAACTCTACAATAAGGGAATGGGACAAGAATATTATTCTTTAATTACTT  189

seq1  TCT-GAGTCTTTACTAGCATAGTTATTAGCCTCTGTAGTTC-AATACATT  245
      ||| ||||||||||||||||||||||||||||||||||||| |||| |||
seq2  TCTGGAGTCTTTACTAGCATAGTTATTAGCCTCTGTAGTTCAAATAAATT  239

seq1  TTTTGTGATTTAATAC-TTTATACTAAGAGAAAGCTATTATATTTATCTT  294
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTGTGATTTAATACTTTTATACTAAGAGAAAGCTATTATATTTATCTT  289

seq1  ATTTGTCAAAGTTCTTTTGATCTCTACCAATTGTGAAATCTCAAATTCAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCAAAGTTCTTTTGATCTCTACCAATTGTGAAATCTCAAATTCAC  339

seq1  TGCCATATTTTTAGGTTAGGAAACATGGCTGGATTCCATTCCTGAAACCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATTTTTAGGTTAGGAAACATGGCTGGATTCCATTCCTGAAACCC  389

seq1  AAATCTTTATTGTCCCAATTTTTTCATATATAACCACTGTACCTTTTTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTATTGTCCCAATTTTTTCATATATAACCACTGTACCTTTTTTT  439

seq1  ACCTGTAGGTTTTAGAAGTATAGAGCAACAGAACAATATTGGTTTCTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGGTTTTAGAAGTATAGAGCAACAGAACAATATTGGTTTCTTCT  489

seq1  CTTATGGCAGGGTAGTTAGAAAACGATCACCTTACATACAAGAAATAGCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGCAGGGTAGTTAGAAAACGATCACCTTACATACAAGAAATAGCC  539

seq1  TAGAGAGCTGTAGAAATGGCTCAGTGAATCACAGTATCTACCTACCTTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCTGTAGAAATGGCTCAGTGAATCACAGTATCTACCTACCTTTC  589

seq1  TTACAGGGAACCTGGGGTCAGTCTCCAGCACTCTCATTGGGCTGCTCACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGAACCTGGGGTCAGTCTCCAGCACTCTCATTGGGCTGCTCACA  639

seq1  ACCACCTGTAGCTACAGATCCAGGTGAAAGAATGTTAGGTCTTACATCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGTAGCTACAGATCCAGGTGAAAGAATGTTAGGTCTTACATCCT  689

seq1  TGGGAATCTGCATGCATCTTCACATACACACACATAATTGGAATAATAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCTGCATGCATCTTCACATACACACACATAATTGGAATAATAAA  739

seq1  AATGAATATCAAAACCTTTTTTACAATATGACTTGGAAATAAACAAAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATCAAAACCTTTTTTACAATATGACTTGGAAATAAACAAAAAT  789

seq1  ATAAAAGCAGAGAATCTGATAGAACAGTAACTTTGCACTGCTTGGCCATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCAGAGAATCTGATAGAACAGTAACTTTGCACTGCTTGGCCATG  839

seq1  GGTGAGAAAGGGACTTGTAAAAGTCTAGTAAGTATGAATTGCACCCCAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAAAGGGACTTGTAAAAGTCTAGTAAGTATGAATTGCACCCCAAA  889

seq1  CCTTCATTTGAGTAGCGTATTTTTATTGAAATAATATCAGAAATCAATAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTTGAGTAGCGTATTTTTATTGAAATAATATCAGAAATCAATAT  939

seq1  ATGGATCATATGATGACATACAGGCAAACTTCCTTGTCATGATTTTACCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCATATGATGACATACAGGCAAACTTCCTTGTCATGATTTTACCC  989

seq1  ATGTTTCTTCATGGGACTGGGGTAAAAATAGTTAAGTTAAAACATAATTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTCATGGGACTGGGGTAAAAATAGTTAAGTTAAAACATAATTT  1039

seq1  ATATGCGTTGAACATAACAAACAGTATTTCTGAGAAGCAATTAAGAAAGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCGTTGAACATAACAAACAGTATTTCTGAGAAGCAATTAAGAAAGT  1089

seq1  GAATTC  1100
      ||||||
seq2  GAATTC  1095