BAC Information

Click to search

BAC

Clone NameB6Ng01-047K17
Chromosome10 (Build37)
Map Location 47,350,159 - 47,351,122
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041632, LOC668252, LOC100042387
Downstream geneLOC100041663, LOC100042398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047K17.bB6Ng01-047K17.g
ACCDH872469DH872470
length1,210948
definitionDH872469|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K17, 5' end.DH872470|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcaggttcaagacccttggaaaggcctg
tatacttattttgtgcaccatgttttctctttgctcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcctctagaatcctccctgc
cttaaccacttgataacatgtgaaaaggaacaaaagggcttctaacacta
gaaaaagttcaaggccaaacataccttataaagctattttccactttact
tctgatagactgtcttgaatttccttagaaagttcaaggccaggcttacc
tcgtaaagctatactcactggtactctcgttccccagctgaaaagttctg
aattcatacagttgaatccttcttaacagtctgctttacgggaaccttta
ttaccgcgacccgcagttctggttctggaatgagggatcttccttgcgcc
agtcccgagttttttctcgtattttttcgtcccggattttttctcgtccc
gtcccgggtttcggcaccaattgttattagacgcgttctcacgaccggcc
aggaaagacgcaacaaaccagaatcttctgtggcaaagctttattgctta
catcttcaggagccagagtgcagagagcaagcccgcagagcagagagcaa
gcccgcaagaagcagagagcaagcccgcaatggcgaaaccccatcccttt
ttaagagattatcctccacctaggatgtatactccctgattggctgcagc
ccatcgcccagttgtcatcacgggaaaggcagacacatggtgggaaaact
gctcctgcatgtgtgcagactatgttacactagaacacagctgtcagtgc
atcttatatgcaatgggaggcgctcctccaccctgagagacaggatcaga
aattgtacatataacattaaattgttatgaggtgctacatgtgttgattt
gcttgaagtttctatagcgacggctttcggtgctctggtgcgcgtatatg
tccagttacgaactggattagctagcgattaccgttctgtgtacactcga
catcttcgat
gaattcctaagtatagaaataagtgagttactgattctttggccatctca
tgggatcttttcatttttttgattgtttgtttggttttttgggggtccag
tttgaatgtggcaagctaccgttttatcctattttattatatcattagac
acatgattgatctctagtgagacaggaagggagtggatccaaatggaagg
ggatataaggaggaagaagtgtaattagttgaaggaggggaaattgtaat
cagaatatatcatgtgaaaaaaaaaaagaatatttgtaataaaagaaaaa
agaaagaaatctttaaaaaaataattttaatgaaatacaatgtaaaatgc
tataaatatctaaggtttaaaaaattccattactaattcttaaacatgca
ttgaaaagattatattaaattttgattatgtaaatgactaaaattatgaa
actagttattatgtagaataattataaaatgtagatttacaaaataagaa
gcaatataatattgcatataaggaaacttaattggatggtgtttttgatt
atttgctttaatatactataaagtacttaaaggagtatcatataagtcat
aatttatataagtttattttatgatattttaatatttctatcatatgcta
cgcccactccagtgaaatttgccagtccgggttgaaaagcctggaggtag
tcaagaggcaaagagttcaagcaaactcaacctcctggaacctttggcat
tctcatagcccatatactcaaaccctatccctgcattagtaaggtgtacg
tgtctttcatattgttttattataagtgcctttaagattgattttttttc
catttttattaggtatttagctcattacatttccatgctataccaaaggt
cccatatccacccacctcactcccttgccaccatcccctttcgccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_47350159_47351122
seq2: B6Ng01-047K17.g_67_1014

seq1  GAATTCCTAAGTATAGAAATAAGTGAGTTACTGATTCTTTGGCCATCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGTATAGAAATAAGTGAGTTACTGATTCTTTGGCCATCTCA  50

seq1  TGGGATCTTTTCATTTTTTTGATTGTTTGTTTGGTTTTTTGGGGGTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTTTTCATTTTTTTGATTGTTTGTTTGGTTTTTTGGGGGTCCAG  100

seq1  TTTGAATGTGGCAAGCTACCGTTTTATCCTATTTTATTATATCATTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGTGGCAAGCTACCGTTTTATCCTATTTTATTATATCATTAGAC  150

seq1  ACATGATTGATCTCTAGTGAGACAGGAAGGGAGTGGATCCAAATGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTGATCTCTAGTGAGACAGGAAGGGAGTGGATCCAAATGGAAGG  200

seq1  GGATATAAGGAGGAAGAAGTGTAATTAGTTGAAGGAGGGGAAATTGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAAGGAGGAAGAAGTGTAATTAGTTGAAGGAGGGGAAATTGTAAT  250

seq1  CAGAATATATCATGTGAAAAAAAAAAAGAATATTTGTAATAAAAGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATATCATGTGAAAAAAAAAAAGAATATTTGTAATAAAAGAAAAA  300

seq1  AGAAAGAAATCTTTAAAAAAATAATTTTAATGAAATACAATGTAAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAATCTTTAAAAAAATAATTTTAATGAAATACAATGTAAAATGC  350

seq1  TATAAATATCTAAGGTTTAAAAAATTCCATTACTAATTCTTAAACATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATCTAAGGTTTAAAAAATTCCATTACTAATTCTTAAACATGCA  400

seq1  TTGAAAAGATTATATTAAATTTTGATTATGTAAATGACTAAAATTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGATTATATTAAATTTTGATTATGTAAATGACTAAAATTATGAA  450

seq1  ACTAGTTATTATGTAGAATAATTATAAAATGTAGATTTACAAAATAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTATTATGTAGAATAATTATAAAATGTAGATTTACAAAATAAGAA  500

seq1  GCAATATAATATTGCATATAAGGAAACTTAATTGGATGGTGTTTTTGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATAATATTGCATATAAGGAAACTTAATTGGATGGTGTTTTTGATT  550

seq1  ATTTGCTTTAATATACTATAAAGTACTTAAAGGAGTATCATATAAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTTAATATACTATAAAGTACTTAAAGGAGTATCATATAAGTCAT  600

seq1  AATTTATATAAGTTTATTTTATGATATTTTAATATTTCTATCATATGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATAAGTTTATTTTATGATATTTTAATATTTCTATCATATGCTA  650

seq1  CGCCCACTCCAGTGAAATTTGCCAGTCCGGGTTGAAAAGCCTGGAGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACTCCAGTGAAATTTGCCAGTCCGGGTTGAAAAGCCTGGAGGTAG  700

seq1  TCAAGAGGCAAAGAGTTTCAAGCAAACTCAACCTCCTGGAACC-TTGGCA  749
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  TCAAGAGGCAAAGAG-TTCAAGCAAACTCAACCTCCTGGAACCTTTGGCA  749

seq1  TTCTCATAGCCAATATACTCAAACCCTATCCCTGCATTAGTAAGGTGTAC  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATAGCCCATATACTCAAACCCTATCCCTGCATTAGTAAGGTGTAC  799

seq1  GGTGTCTTTCAATATTGTTTTATTATAAGTGCCTTTAAAGATTGAATTTT  849
       ||||||||| ||||||||||||||||||||||||| ||||||| |||||
seq2  -GTGTCTTTC-ATATTGTTTTATTATAAGTGCCTTT-AAGATTG-ATTTT  845

seq1  TTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATA  899
      ||||||| |||||||||||||||||||||| |||||||||| ||||||||
seq2  TTTTCCA-TTTTTATTAGGTATTTAGCTCA-TTACATTTCC-ATGCTATA  892

seq1  CCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCC  949
      ||||| ||  |||||||||||||| || ||||||| || |||||   |||
seq2  CCAAAGGT--CCCATATCCACCCA-CCTCACTCCCTTG-CCACC--ATCC  936

seq1  CCCTTTTTGGCCCTG  964
      ||   ||| ||||||
seq2  CC---TTTCGCCCTG  948