BAC Information

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BAC

Clone NameB6Ng01-047P23
Chromosome10 (Build37)3 (Build37)
Map Location 37,116,468 - 37,117,27241,059,356 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047P23.bB6Ng01-047P23.g
ACCDH872701DH872702
length805378
definitionDH872701|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P23, 5' end.DH872702|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,116,468 - 37,117,272)(41,059,356 - 41,059,737)
sequence
gaattcataggtggtaggtttgaaagaaagaaattacatgcattgtaagc
ttagttgtgtctatggagacgtagttttatttatttgtttaaataaaaga
gacttacgcagataaagggaaacagggtgatttgaagtgatgtcagtgga
caactcctttccttactaagaaaacaccaagaatgtagaaactacagcac
agcagtgctttaatatatatgaccagaaacatcagacaacaagaaaaaag
accgcaacaatagggtcaaatttccaatatggacaagatatttggggact
ttctaatgcctagaatcttttgacatggttcgttctctctttataaaaat
caaagtttaacgcgtagcttttggtcgagctggagaagcgaatggaaatc
acacttataacctcggtgtcctttgaacttcgggttatacttttctcttc
caggtccactttttatctagctctccgctcccatttctcactagtgatta
tgagatgttgtgttaagtcagttcctttcccagaactaaaacaggaagac
aaccggcttttctatctgtgtggaataaatatcataaaagaaatctagca
aactgcacctcctttcgtggagctgggttggggatccagccagggcgggg
cgggttagacatggcttaggaaggacatggctgagcccaaggctgtcgcg
ggtctgctaaactgcacagagtgccacttgcaaagtccctctctgcccca
tggcgacagatggtctttcttctgcctgtgtgtgtgaagggggtggggag
tggtc
tttgttcagctctgagccccattttttaatgaggttatttgattttctgg
agtccaccttcttgagttctttatatatattggatattagtcccctatcc
gatttgggataggtaaagatcctttcccaatctgttggtggtctttttgt
cttatcgacagtgtcttttgccttgcagaagctttgcagttttatgaggt
tccatttatcaattctcaatcttacagaacaagccattgctgttctattc
aggactttttcccctgtacccatatcttcaaggctttttcctactttctc
ctctataagtttcagtgtctctggttttatgtggagttccttaatccact
tagatttgaccttagtacaaggagatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_37116468_37117272
seq2: B6Ng01-047P23.b_49_853

seq1  GAATTCATAGGTGGTAGGTTTGAAAGAAAGAAATTACATGCATTGTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGTGGTAGGTTTGAAAGAAAGAAATTACATGCATTGTAAGC  50

seq1  TTAGTTGTGTCTATGGAGACGTAGTTTTATTTATTTGTTTAAATAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTGTCTATGGAGACGTAGTTTTATTTATTTGTTTAAATAAAAGA  100

seq1  GACTTACGCAGATAAAGGGAAACAGGGTGATTTGAAGTGATGTCAGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACGCAGATAAAGGGAAACAGGGTGATTTGAAGTGATGTCAGTGGA  150

seq1  CAACTCCTTTCCTTACTAAGAAAACACCAAGAATGTAGAAACTACAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTTTCCTTACTAAGAAAACACCAAGAATGTAGAAACTACAGCAC  200

seq1  AGCAGTGCTTTAATATATATGACCAGAAACATCAGACAACAAGAAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCTTTAATATATATGACCAGAAACATCAGACAACAAGAAAAAAG  250

seq1  ACCGCAACAATAGGGTCAAATTTCCAATATGGACAAGATATTTGGGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAACAATAGGGTCAAATTTCCAATATGGACAAGATATTTGGGGACT  300

seq1  TTCTAATGCCTAGAATCTTTTGACATGGTTCGTTCTCTCTTTATAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGCCTAGAATCTTTTGACATGGTTCGTTCTCTCTTTATAAAAAT  350

seq1  CAAAGTTTAACGCGTAGCTTTTGGTCGAGCTGGAGAAGCGAATGGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTAACGCGTAGCTTTTGGTCGAGCTGGAGAAGCGAATGGAAATC  400

seq1  ACACTTATAACCTCGGTGTCCTTTGAACTTCGGGTTATACTTTTCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATAACCTCGGTGTCCTTTGAACTTCGGGTTATACTTTTCTCTTC  450

seq1  CAGGTCCACTTTTTATCTAGCTCTCCGCTCCCATTTCTCACTAGTGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCACTTTTTATCTAGCTCTCCGCTCCCATTTCTCACTAGTGATTA  500

seq1  TGAGATGTTGTGTTAAGTCAGTTCCTTTCCCAGAACTAAAACAGGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTTGTGTTAAGTCAGTTCCTTTCCCAGAACTAAAACAGGAAGAC  550

seq1  AACCGGCTTTTCTATCTGTGTGGAATAAATATCATAAAAGAAATCTAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGCTTTTCTATCTGTGTGGAATAAATATCATAAAAGAAATCTAGCA  600

seq1  AACTGCACCTCCTTTCGTGGAGCTGGGTTGGGGATCCAGCCAGGGCGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCACCTCCTTTCGTGGAGCTGGGTTGGGGATCCAGCCAGGGCGGGG  650

seq1  CGGGTTAGACATGGCTTAGGAAGGACATGGCTGAGCCCAAGGCTGTCGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTAGACATGGCTTAGGAAGGACATGGCTGAGCCCAAGGCTGTCGCG  700

seq1  GGTCTGCTAAACTGCACAGAGTGCCACTTGCAAAGTCCCTCTCTGCCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCTAAACTGCACAGAGTGCCACTTGCAAAGTCCCTCTCTGCCCCA  750

seq1  TGGCGACAGATGGTCTTTCTTCTGCCTGTGTGTGTGAAGGGGGTGGGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGACAGATGGTCTTTCTTCTGCCTGTGTGTGTGAAGGGGGTGGGGAG  800

seq1  TGGTC  805
      |||||
seq2  TGGTC  805

seq1: chr3_41059356_41059737
seq2: B6Ng01-047P23.g_69_451 (reverse)

seq1  CTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACAT  50
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  CTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACAT  50

seq1  AAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTG  100
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  AAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTAGGAAAAAGCCTTG  100

seq1  AAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGT  150
      |||||||||  |||||||||||| ||||| ||||||||||||||||||||
seq2  AAGATATGGGTACAGGGGAAAAAGTCCTGAATAGAACAGCAATGGCTTGT  150

seq1  GCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTT  200
       |||||||||||||||| || |||||| ||||||| ||||||||||||||
seq2  TCTGTAAGATTGAGAATTGATAAATGGAACCTCATAAAACTGCAAAGCTT  200

seq1  CTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG-GCACCAACAGATT  249
      |||||||||||||||||| ||| |||||||||||||  ||||||||||||
seq2  CTGCAAGGCAAAAGACACTGTCGATAAGACAAAAAGACCACCAACAGATT  250

seq1  GGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAAT  299
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GGGAAAGGATCTTTACCTATCCCAAATCGGATAGGGGACTAATATCCAAT  300

seq1  ATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCAT  349
      |||||| ||||||||||||||||||| ||||||||||||||||||| |||
seq2  ATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCTCAT  350

seq1  TAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  382
      ||||||||||||||||||||| |||||||||||
seq2  TAAAAAATGGGGCTCAGAGCTGAACAAAGAATT  383