BAC Information

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BAC

Clone NameB6Ng01-048A21
Chromosome4 (Build37)10 (Build37)
Map Location 59,054,865 - 59,055,895104,053,521 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSvep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10
Downstream geneAI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048A21.bB6Ng01-048A21.g
ACCDH872731DH872732
length1,029928
definitionDH872731|Mus musculus domesticus DNA, BAC clone: B6Ng01-048A21, 5' end.DH872732|Mus musculus domesticus DNA, BAC clone: B6Ng01-048A21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,054,865 - 59,055,895)(104,053,521 - 104,054,363)
sequence
gaattctgttattatcttcacacgtagatgtaagcataacatgaaaacca
accctcagtccccagccacagtgctctctgacctagccccgcatggcagt
cactactgatgcgttctcaggaatacaaaagtggagaaaatgaagccatc
agaggggcctccctgattccaagcatcattcagatatcagtaaatgggat
tccgagttaatcgtggatttaggagtccttttcgtgtttctattatccgt
ttaacctagcttgtagccaaggatcaccgcgtttgactttggcaggcccg
ggttatgatctgctgggaaccaaacccagacctctgtgtgggcagtctcc
accactcagctacttcctagctccactccaacgaatgcccatgcatcaca
aagtgtggaactcacgcttgctcagatatccccatatgtactaaaccatt
ttgagcaaattggaactgtccattttcactatggtcagggcacacttatt
tcttcataaagtttcatggtatactctaaatgtttactttgttctggtag
caagtgtctataaattttacctattacacacaagctgtacttaaaatagg
tttcatgttacagttaatatttatttaagataaattcttagtaatataat
tcccgagtcaaactatctagtcatcttacattttgttagctgttgcctgg
agtggggtctaaaaggatgtacagacaatacaggaaagtactcttctctg
acatgctgaccctaggaatctgtattttcaatcttttgtcaatgtgatag
gtgaaaaacagtgatttatttagtagacagtacctctgtaacaaacaacg
aagttgcttatcctaaatatttacaagtttgtcttgttctgagatatctg
tttagatacttgacttattctattatgtttcctttttccctccggtgtga
aaggtgtttttatattaagaatgggaactcttgctggatagtggtggtga
cggcccacacctttagtcgcagcctcttg
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcattctggccgttcctca
aaaaattggacatagtactcccggaggatcccgcaatacctcttctgggt
atatatccagaagacgttccaactggtaagaaggacacatgctccactat
gttcagagcagccttatttataatagccagaagctggaaagaacccagat
gccctcaacagaggaatggatacaaaaaatgtggtacatttacgcaatgg
agtactactcagctattaaaaggaatgaatttatgaaattcctaggcaaa
tggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaaa
gaactcaaatgatatgtactcactgataagtggatattagcctagaaact
tagtatacccgagatataagatacaatttgtcgtttcactcttaacatga
cttcgttggttttgcagaatgggtggatggcaccaataaaccacccttaa
ttttctcaaataagccctgagattgacaggaactgaaatgacttgatggt
cacctaagaggctggtttatttcaaaagttctttgacacatgtatttggc
acaggcaagggatgcttccagctgcttgtcttctgtcagatattgatgag
gcacatgcatatcactcaggccatgagagacatcactgcctgaaactaca
tactgttccctctgatctgagagacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_59054865_59055895
seq2: B6Ng01-048A21.b_44_1072

seq1  GAATTCTGTTATTATCTTCACACGTAGATGTAAGCATAACATGAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATTATCTTCACACGTAGATGTAAGCATAACATGAAAACCA  50

seq1  ACCCTCAGTCCCCAGCCACAGTGCTCTCTGACCTAGCCCCGCATGGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGTCCCCAGCCACAGTGCTCTCTGACCTAGCCCCGCATGGCAGT  100

seq1  CACTACTGATGCGTTCTCAGGAATACAAAAGTGGAGAAAATGAAGCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTGATGCGTTCTCAGGAATACAAAAGTGGAGAAAATGAAGCCATC  150

seq1  AGAGGGGCCTCCCTGATTCCAAGCATCATTCAGATATCAGTAAATGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCCTCCCTGATTCCAAGCATCATTCAGATATCAGTAAATGGGAT  200

seq1  TCCGAGTTAATCGTGGATTTAGGAGTCCTTTTCGTGTTTCTATTATCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGTTAATCGTGGATTTAGGAGTCCTTTTCGTGTTTCTATTATCCGT  250

seq1  TTAACCTAGCTTGTAGCCAAGGATCACCGCGTTTGACTTTGGCAGGCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTAGCTTGTAGCCAAGGATCACCGCGTTTGACTTTGGCAGGCCCG  300

seq1  GGTTATGATCTGCTGGGAACCAAACCCAGACCTCTGTGTGGGCAGTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGATCTGCTGGGAACCAAACCCAGACCTCTGTGTGGGCAGTCTCC  350

seq1  ACCACTCAGCTACTTCCTAGCTCCACTCCAACGAATGCCCATGCATCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCAGCTACTTCCTAGCTCCACTCCAACGAATGCCCATGCATCACA  400

seq1  AAGTGTGGAACTCACGCTTGCTCAGATATCCCCATATGTACTAAACCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGAACTCACGCTTGCTCAGATATCCCCATATGTACTAAACCATT  450

seq1  TTGAGCAAATTGGAACTGTCCATTTTCACTATGGTCAGGGCACACTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAAATTGGAACTGTCCATTTTCACTATGGTCAGGGCACACTTATT  500

seq1  TCTTCATAAAGTTTCATGGTATACTCTAAATGTTTACTTTGTTCTGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATAAAGTTTCATGGTATACTCTAAATGTTTACTTTGTTCTGGTAG  550

seq1  CAAGTGTCTATAAATTTTACCTATTACACACAAGCTGTACTTAAAATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTCTATAAATTTTACCTATTACACACAAGCTGTACTTAAAATAGG  600

seq1  TTTCATGTTACAGTTAATATTTATTTAAGATAAATTCTTAGTAATATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTTACAGTTAATATTTATTTAAGATAAATTCTTAGTAATATAAT  650

seq1  TCCCGAGTCAAACTATCTAGTCATCTTACATTTTGTTAGCTGTTGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTCAAACTATCTAGTCATCTTACATTTTGTTAGCTGTTGCCTGG  700

seq1  AGTGGGGTCTAAAAGGATGTACAGACAATACAGGAAAGTACTCTTCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGTCTAAAAGGATGTACAGACAATACAGGAAAGTACTCTTCTCTG  750

seq1  ACATGCTGACCCTAGGAATCTGTATTTTCAATCTTTTGTCAATGTGATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTGACCCTAGGAATCTGTATTTTCAATCTTTTGTCAATGTGATAG  800

seq1  GTGAAAAACAGTGATTTATTTAGTAGACAGTACCTCTGTAACAAACAACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAACAGTGATTTATTTAGTAGACAGTACCTCTGTAACAAACAACG  850

seq1  AAGTTGCTTATCCTAAATATTTACAAGTTTGTCTTGTTCTGAGAATATCT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGTTGCTTATCCTAAATATTTACAAGTTTGTCTTGTTCTGAG-ATATCT  899

seq1  GTTTAGATACTTGACTTATTCTATTATGTTTCCTTTTTCCCTCCGGTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATACTTGACTTATTCTATTATGTTTCCTTTTTCCCTCCGGTGTG  949

seq1  AAAGGGTGTTTTGTATATTAAGAATGGGAACTCTTGCTGGATAGTGGTGG  1000
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAA-GGTGTTTT-TATATTAAGAATGGGAACTCTTGCTGGATAGTGGTGG  997

seq1  TGACGGCCCACACCTTTAGTCGCAG-CTCTTG  1031
      ||||||||||||||||||||||||| ||||||
seq2  TGACGGCCCACACCTTTAGTCGCAGCCTCTTG  1029

seq1: chr10_104053521_104054363
seq2: B6Ng01-048A21.g_63_692 (reverse)

seq1  CAAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCCA  50
      ||||||||||||||||||| |||||| |||||||||| ||||||||||||
seq2  CAAATTGTATCTTATATCTCGGGTATACTAAGTTTCTAGGCTAATATCCA  50

seq1  CTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGTTACCGC  100
      |||||||||||||||||||     |||||| |||||||||| |||||| |
seq2  CTTATCAGTGAGTACATATCATTTGAGTTCTTTTGTGATTGTGTTACCTC  100

seq1  ACTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAA  150
      |||||||||||| | ||||||||||| |||||||||||||||||||||||
seq2  ACTCAGGATGATGCCCTCCAGGTCCAACCATTTGCCTAGGAATTTCATAA  150

seq1  ATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAATGTAATT  200
      |||||||| ||||||||||                               
seq2  ATTCATTCCTTTTAATAGC-------------------------------  169

seq1  ACAATTAATTAATTTATTAATTAAATAATTTAATAATTTAATTGATAAAT  250
                                                        
seq2  --------------------------------------------------  169

seq1  TAATTTAATTAATTAATTTAATTAATTAAATTAAATAATAATTTAATAAT  300
                                                        
seq2  --------------------------------------------------  169

seq1  AAATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAATAATTTAAT  350
                                       | ||||           
seq2  ---------------------------------TGAGTA-----------  175

seq1  TAATGTAATTTAATTAATGTAATTACATTACATTTAATAGCTCCATTGTG  400
                        |||                   |||||||| |
seq2  ------------------GTA-------------------CTCCATTGCG  188

seq1  TAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGG  450
      ||||||||||||||||| |||||| ||||||||||||| |||||||||||
seq2  TAAATGTACCACATTTTTTGTATCCATTCCTCTGTTGA-GGGCATCTGGG  237

seq1  TTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGG  500
      |||||||||||| |||||||||||||||||||||||| |||| |||||||
seq2  TTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTCTGAACATAGTGG  287

seq1  AGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGA  550
      ||||||||||||||||||| |||||  | |||||||||||||| ||||||
seq2  AGCATGTGTCCTTCTTACCAGTTGGAACGTCTTCTGGATATATACCCAGA  337

seq1  AGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAA  600
      ||||||||||| ||||||||||| |||||||||||||||||| ||| |||
seq2  AGAGGTATTGCGGGATCCTCCGGGAGTACTATGTCCAATTTTTTGAGGAA  387

seq1  CCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAAC  650
      | ||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGAATGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAAC  437

seq1  AATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCA  487

seq1  CCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAG  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGATGGAATCTCAG  537

seq1  GGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTT  800
      ||||||||||||||||||||| |||||||||||||||| ||| |||||||
seq2  GGTTGTTTTGATTTGCATTTCTCTGATGATTAAGGATGCTGAGCATTTTT  587

seq1  TCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  843
      ||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAGGTGCTTCTCAGCCATTCGGTATTCCTCAGGTGAGAATTC  630