BAC Information

Click to search

BAC

Clone NameB6Ng01-048B21
Chromosome2 (Build37)10 (Build37)
Map Location 100,608,589 - 100,608,90225,380,279 - 25,381,069
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668702, LOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048B21.bB6Ng01-048B21.g
ACCDH872777DH872778
length916798
definitionDH872777|Mus musculus domesticus DNA, BAC clone: B6Ng01-048B21, 5' end.DH872778|Mus musculus domesticus DNA, BAC clone: B6Ng01-048B21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,608,589 - 100,608,902)(25,380,279 - 25,381,069)
sequence
gaattcatcttggtagagttttcctttgatgagtgtgaagtgtccttcct
tatcttttttgataacttttggttgaaatttgatgttattcgatattaga
atgactactccagcttgtttcttgggaccattttcttggaaaattgtttt
ctatttctagcctttgactctgaggtagtgtctgtttttgtcactgaggt
gagtttcctgtatacagcaaaatgatagatcctttttatgtatccagtct
gttagtctatgtctttttcttggggaattgagtccatgttaagagatatt
aaggaaaagtgattgttgcttcctgttattttttttttttggtctgtttt
ttttttaaattttttattaggtatttagctcatttacctttccaatgcta
taccaaaagtcccccatacccacccacccccactcccctacccacccact
ccccctttttggccctggcgttcccctgtactggggcatataaaatttgc
gtgtccaatgggcctctctttccagtgctggccgactgttatttttaatg
ttattttttatgtttttttgcctatcttcttttgggtttgttgaaagatt
actttcttgctttctctagggtgtagtttcccttcttgtgtggagtttcc
catctactatctgtgcccttctcccagccttgagtaggcttaacagaccc
acaatggttttactacctagccagagtcatctggtctctagtcatttgcc
atttcctataggatcttgaggagtagactgtccactgagcttgctttgca
gaacaatcctgctgaaacaaaagatgggtctgtggactttccccatataa
acacaatgctgaatattgctttgagtttgatcagaaccttggtcttggct
tcattcttctttgcac
gaattctgacctctgatacaatgtgatctttgctgacataccacagagac
catttgtggtctcagaattctgtttgtgggtttcaaaatcacattttaat
gtatttatttgtgtacacacaggagtgccatgacatatgtgggcaggtta
tgcggacagacttagaggagttcgttttcttctaccgtgtgtgtcctggg
gatcaaacaccccgggtagaacgcacctttaccctgaaccatctcaccag
cctgtctgtacatttataaaaagaagaatgtaaaaatgttttctgtggct
gggtttgcttctgcctaggactcaccatttctggccacggcctgcagtat
ttgctcctatgtgcttgcttctttcaggggtggtgggagagggggtacac
atggatttatatagggttcaactcctttcctcttccccttgtactctctg
ctccatttttaattttttcttttgctctcatgtagcttttaggacccctg
ggaaacataatattcttaatggctgaagtttgagaaaaacagtaggttgc
ttttgcaaataacatgtgcttttgggggctataacataatattaaatctg
cctctttgccctgcaaagtgtacaaagctaaaatatatggagaaagctag
acaataattgtaataaaaattgtccctgctcagatattttcttagaatag
gctatcaataatgattatagattaaagttctaaaaaagaaagctttagaa
ataagagtgtaaaaaaaagtaaaagaatggtagaaggaggaatggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_100608589_100608902
seq2: B6Ng01-048B21.b_60_374 (reverse)

seq1  AAAAATAACAGGAAGCAACAATTACCTTTCCTTAATATCTCTTAATATCA  50
      |||||||||||||||||||||| || |||||||||||||||||||     
seq2  AAAAATAACAGGAAGCAACAATCACTTTTCCTTAATATCTCTTAA----C  46

seq1  ATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACAC  100
      |||||||||||||||||| ||||||||||||||||||||||||| |||| 
seq2  ATGGACTCAATTCCCCAAGAAAAAGACATAGACTAACAGACTGGATACAT  96

seq1  AAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAA  150
      ||| |||| | | |||| |||||  |||||||||| || ||||| || ||
seq2  AAAAAGGATCTATCATTTTGCTGTATACAGGAAACTCACCTCAGTGACAA  146

seq1  AGACAGACACTACCTCAGAGTGAAAGGC------TGGAAAACAATTTTCC  194
      | ||||||||||||||||||| ||||||      | ||||||||||||||
seq2  AAACAGACACTACCTCAGAGTCAAAGGCTAGAAATAGAAAACAATTTTCC  196

seq1  AAGCAAATGGTCTGAAGAAACAGGCTGGAGTAGCCATTCTAATATCGGAT  244
      ||| ||||||||  |||||||| |||||||||| ||||||||||||| ||
seq2  AAGAAAATGGTCCCAAGAAACAAGCTGGAGTAGTCATTCTAATATCGAAT  246

seq1  AAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTT  294
      || ||| | || ||||| ||||||||||||||||| ||||| ||||||||
seq2  AACATCAAATTTCAACCAAAAGTTATCAAAAAAGATAAGGAAGGACACTT  296

seq1  CATACTCATCAAAGGTAAAA  314
      || |||||||||||| ||| 
seq2  CACACTCATCAAAGGAAAA-  315

seq1: chr10_25380279_25381069
seq2: B6Ng01-048B21.g_66_863

seq1  GAATTCTGACCTCTGATACAATGTGATCTTTGCTGACATACCACAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACCTCTGATACAATGTGATCTTTGCTGACATACCACAGAGAC  50

seq1  CATTTGTGGTCTCAGAATTCTGTTTGTGGGTTTCAAAATCACATTTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGGTCTCAGAATTCTGTTTGTGGGTTTCAAAATCACATTTTAAT  100

seq1  GTATTTATTTGTGTACACACAGGAGTGCCATGACATATGTGGGCAGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTGTGTACACACAGGAGTGCCATGACATATGTGGGCAGGTTA  150

seq1  TGCGGACAGACTTAGAGGAGTTCGTTTTCTTCTACCGTGTGTGTCCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGACAGACTTAGAGGAGTTCGTTTTCTTCTACCGTGTGTGTCCTGGG  200

seq1  GATCAAACACCCCGGGTAGAACGCACCTTTACCCTGAACCATCTCACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAACACCCCGGGTAGAACGCACCTTTACCCTGAACCATCTCACCAG  250

seq1  CCTGTCTGTACATTTATAAAAAGAAGAATGTAAAAATGTTTTCTGTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGTACATTTATAAAAAGAAGAATGTAAAAATGTTTTCTGTGGCT  300

seq1  GGGTTTGCTTCTGCCTAGGACTCACCATTTCTGGCCACGGCCTGCAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGCTTCTGCCTAGGACTCACCATTTCTGGCCACGGCCTGCAGTAT  350

seq1  TTGCTCCTATGTGCTTGCTTCTTTCAGGGGTGGTGGGAGAGGGGGTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTATGTGCTTGCTTCTTTCAGGGGTGGTGGGAGAGGGGGTACAC  400

seq1  ATGGATTTATATAGGGTTCAACTCCTTTCCTCTTCCCCTTGTACTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTATATAGGGTTCAACTCCTTTCCTCTTCCCCTTGTACTCTCTG  450

seq1  CTCCATTTTTAATTTTTTCTTTTGCTCTCATGTAGCTTTTAGGACCCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTTTAATTTTTTCTTTTGCTCTCATGTAGCTTTTAGGACCCCTG  500

seq1  GGAAACATAATATTCTTAATGGCTGAAGTTTGAGAAAAACAGTAGGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATAATATTCTTAATGGCTGAAGTTTGAGAAAAACAGTAGGTTGC  550

seq1  TTTTGCAAATAACATGTGC-TTTGGGGGCTATAACATAATATT-AATCTG  598
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  TTTTGCAAATAACATGTGCTTTTGGGGGCTATAACATAATATTAAATCTG  600

seq1  CCTCTTTGCCCTGCAAAGTGTACAAAGCTAAAATATATGGAGAAAGCTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGCCCTGCAAAGTGTACAAAGCTAAAATATATGGAGAAAGCTAG  650

seq1  ACAAT-ATTGTAATAAAAATTGT-CCTGCTCAGATA-TTTCTTAGAATAG  695
      ||||| ||||||||||||||||| |||||||||||| |||||||||||||
seq2  ACAATAATTGTAATAAAAATTGTCCCTGCTCAGATATTTTCTTAGAATAG  700

seq1  GCTATCAATAATGATTATAGATT-AAGTTCT-AGAAAGAAAGC-TTAGAA  742
      ||||||||||||||||||||||| ||||||| | ||||||||| ||||||
seq2  GCTATCAATAATGATTATAGATTAAAGTTCTAAAAAAGAAAGCTTTAGAA  750

seq1  GTAAGGAGTGGAAAAAAAAG-AAAAGAAGGGCAGAAGGAAGGAAGGGAGG  791
       ||| ||||| ||||||||| ||||||| || |||||| ||||| |||||
seq2  ATAA-GAGTGTAAAAAAAAGTAAAAGAATGGTAGAAGG-AGGAATGGAGG  798