BAC Information

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BAC

Clone NameB6Ng01-048D17
Chromosome10 (Build37)
Map Location 33,861,132 - 33,897,487
singlet/doubletdoublet
Overlap geneDse
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik
Downstream geneTspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048D17.bB6Ng01-048D17.g
ACCDH872851DH872852
length1,109896
definitionDH872851|Mus musculus domesticus DNA, BAC clone: B6Ng01-048D17, 5' end.DH872852|Mus musculus domesticus DNA, BAC clone: B6Ng01-048D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,896,346 - 33,897,487)(33,861,132 - 33,861,911)
sequence
gaattctttagtagactttttcttatgttaggaaaatgatgaaatggcag
catgcttgtccatcatattagatggattgctgtaagcttgatctactcag
tgtatgtatttatttgatgatctagaacttaatgaaaataaaacaaaagg
ctcactcagttattggagaccactgcttacagggcagaaaagtataagct
taccatgcctcatttaatcagacatggagatgaaaacattgtgaagagat
ttaagattgtgatggaagggatttgctcaagctggagttgatagctggga
ggtaccaagtgtgcattgcccagtagtggatttggggggctttcctctta
atttgtgaacccatcggaaacatacccaacaaaggggtctttggggtaga
tgagtgtcttgtttgtgtccttgtgtcctgattctgttgtaattagcccc
gtgtcctctggcagatttcatagctgctatcaacatggttttttatatct
gtaaaatgtagacgaatctttcctccatgaggtcccaaggatggaataag
gtgatgctcaaaaagctcttaggattatagagttggcacacagttgtact
aaaacttcattctttttgttatacagaaagaggcaaagataacaagattg
tcaagtcttgggtgcagagtattccttttagctactctgctgctctggag
ttgtgtttctgagaagtatctgtagtgggtcactctttctccctttcctt
atgtttctgctgtatcatgagacagaaaataagtcacagaggaaacaaat
gacttctctcttgtgtcggagctagttgactacagggaatccagagaact
agtgagggaaaaatataagttgaacttttggacagagatctaattttttt
cctctgcacagatataaattctacatatggattgcagcttctgaatccta
gtgtgtttgtaaataatataaaacagcagagaaggggttataaaaaagga
aaatcttcatcacactgaatgacattcggtggtttgttgctcgatgactg
cagcttgttcagcttgctcgctcaaggcttttcttgtactgctttccagc
ctttgcttt
gaattccaataaatgacgtgaatttattcttcggtcaggaagatatattc
cttagagagtgtggtatggtgtttaaatagaaaggcaaaagaaaagacct
tctggaagctcctaaatcggaaccaagtgtggtgaacgacagagactgaa
aggtggtagagatactgcaaaatgttccctcttcacaaaaacttatttct
tatatcctattattcttattcctttggaaaaaaatgaaggcgcccaaggt
gtttcaaatttttattaagaaaatgatccctgtcctcctggtttgcaccg
gtttcctttgggtccaaactcggaagccagtctcacagcctccagaggag
gctccactcccaggtgctctaccacaaccaggaccccaggagcttggtca
caccaggatctcagggtctcagaggcagtttgactcccaggaactctgac
atacccagaatctctggatcacaagattctggaatcacaggatcacagag
acagctgggctttgaggagttctgactcaaccaggattacaggaaggaca
ggctccagtcagatatcgtaaaggcaggggggcacgagagataaccaggt
ggctggagctaagcataagaagcaacagaagccaaggttacttggtatca
tcagaacctaattctcccaccatagcaagtcttggagacaccatcacacc
agaaaagcaagacttggatctaaagtcaggtctcatgaggatgacagagg
actttaagaaggacataaataactcccttaaagaaatacaagagaacaca
tgtaaacagctagaagcccttaaagaggaaacacaaaaatcccttaaaga
attacaggaaaagacaatcaaacaggcaaaggaaatgaacaaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33896346_33897487
seq2: B6Ng01-048D17.b_46_1154 (reverse)

seq1  AAAGCAAAAGGCTGGAAAAGCAGCTACAAGAAACAGCCTTTGGAGGCCGG  50
      ||||| ||||||||| ||||||| ||||||||| ||||||  |||  || 
seq2  AAAGC-AAAGGCTGG-AAAGCAG-TACAAGAAA-AGCCTT--GAG--CG-  41

seq1  AAGGCAAGGCTGAGACAGGCCTCGCAGTTCATCGAGCAACAAAACCACCG  100
         |||| ||||| ||| ||   |||| |||||||||||| |||||||||
seq2  --AGCAA-GCTGA-ACAAGC--TGCAG-TCATCGAGCAAC-AAACCACCG  83

seq1  AATGGTCCATTTCAGTGTGATGGAGATTTTTCTTTTTTATAAACCCCTTT  150
      ||| |||   |||||||||||| ||||||| |||||||||||  ||| ||
seq2  AAT-GTC--ATTCAGTGTGATGAAGATTTTCCTTTTTTATAA--CCCCTT  128

seq1  CTCTTGCTGTTTTATATTATTTTACAAACACACCCTAGGATTTCAGAAGC  200
      ||| ||||||||||||||| ||||||||||||  |||||| |||||||||
seq2  CTC-TGCTGTTTTATATTA-TTTACAAACACA--CTAGGA-TTCAGAAGC  173

seq1  TTGCAATCCATATGTAAGAATTTAATAATCTGTTGCAGAGGAAAAAAAAT  250
       |||||||||||||| ||||||||   ||||| |||||||| ||||||||
seq2  -TGCAATCCATATGT-AGAATTTA--TATCTG-TGCAGAGG-AAAAAAAT  217

seq1  TAGATCTCTGTCCAAAAGTTCAACTTATATTTTTCCCTCACTAGTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCTGTCCAAAAGTTCAACTTATATTTTTCCCTCACTAGTTCTCT  267

seq1  GGATTCCCTGTAGTCAACTAGCTCCGACACAAGAGAGAAGTCATTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCCTGTAGTCAACTAGCTCCGACACAAGAGAGAAGTCATTTGTTT  317

seq1  CCTCTGTGACTTATTTTCTGTCTCATGATACAGCAGAAACATAAGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGACTTATTTTCTGTCTCATGATACAGCAGAAACATAAGGAAAG  367

seq1  GGAGAAAGAGTGACCCACTACAGATACTTCTCAGAAACACAACTCCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGAGTGACCCACTACAGATACTTCTCAGAAACACAACTCCAGAG  417

seq1  CAGCAGAGTAGCTAAAAGGAATACTCTGCACCCAAGACTTGACAATCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGTAGCTAAAAGGAATACTCTGCACCCAAGACTTGACAATCTTG  467

seq1  TTATCTTTGCCTCTTTCTGTATAACAAAAAGAATGAAGTTTTAGTACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGCCTCTTTCTGTATAACAAAAAGAATGAAGTTTTAGTACAAC  517

seq1  TGTGTGCCAACTCTATAATCCTAAGAGCTTTTTGAGCATCACCTTATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCAACTCTATAATCCTAAGAGCTTTTTGAGCATCACCTTATTCC  567

seq1  ATCCTTGGGACCTCATGGAGGAAAGATTCGTCTACATTTTACAGATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGGGACCTCATGGAGGAAAGATTCGTCTACATTTTACAGATATAA  617

seq1  AAAACCATGTTGATAGCAGCTATGAAATCTGCCAGAGGACACGGGGCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATGTTGATAGCAGCTATGAAATCTGCCAGAGGACACGGGGCTAA  667

seq1  TTACAACAGAATCAGGACACAAGGACACAAACAAGACACTCATCTACCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACAGAATCAGGACACAAGGACACAAACAAGACACTCATCTACCCC  717

seq1  AAAGACCCCTTTGTTGGGTATGTTTCCGATGGGTTCACAAATTAAGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCCTTTGTTGGGTATGTTTCCGATGGGTTCACAAATTAAGAGGA  767

seq1  AAGCCCCCCAAATCCACTACTGGGCAATGCACACTTGGTACCTCCCAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCCCAAATCCACTACTGGGCAATGCACACTTGGTACCTCCCAGCT  817

seq1  ATCAACTCCAGCTTGAGCAAATCCCTTCCATCACAATCTTAAATCTCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTCCAGCTTGAGCAAATCCCTTCCATCACAATCTTAAATCTCTTC  867

seq1  ACAATGTTTTCATCTCCATGTCTGATTAAATGAGGCATGGTAAGCTTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTTTCATCTCCATGTCTGATTAAATGAGGCATGGTAAGCTTATA  917

seq1  CTTTTCTGCCCTGTAAGCAGTGGTCTCCAATAACTGAGTGAGCCTTTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGCCCTGTAAGCAGTGGTCTCCAATAACTGAGTGAGCCTTTTGT  967

seq1  TTTATTTTCATTAAGTTCTAGATCATCAAATAAATACATACACTGAGTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCATTAAGTTCTAGATCATCAAATAAATACATACACTGAGTAG  1017

seq1  ATCAAGCTTACAGCAATCCATCTAATATGATGGACAAGCATGCTGCCATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTTACAGCAATCCATCTAATATGATGGACAAGCATGCTGCCATT  1067

seq1  TCATCATTTTCCTAACATAAGAAAAAGTCTACTAAAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTTTCCTAACATAAGAAAAAGTCTACTAAAGAATTC  1109

seq1: chr10_33861132_33861911
seq2: B6Ng01-048D17.g_68_847

seq1  GAATTCCAATAAATGACGTGAATTTATTCTTCGGTCAGGAAGATATATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAAATGACGTGAATTTATTCTTCGGTCAGGAAGATATATTC  50

seq1  CTTAGAGAGTGTGGTATGGTGTTTAAATAGAAAGGCAAAAGAAAAGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGAGTGTGGTATGGTGTTTAAATAGAAAGGCAAAAGAAAAGACCT  100

seq1  TCTGGAAGCTCCTAAATCGGAACCAAGTGTGGTGAACGACAGAGACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGCTCCTAAATCGGAACCAAGTGTGGTGAACGACAGAGACTGAA  150

seq1  AGGTGGTAGAGATACTGCAAAATGTTCCCTCTTCACAAAAACTTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTAGAGATACTGCAAAATGTTCCCTCTTCACAAAAACTTATTTCT  200

seq1  TATATCCTATTATTCTTATTCCTTTGGAAAAAAATGAAGGCGCCCAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTATTATTCTTATTCCTTTGGAAAAAAATGAAGGCGCCCAAGGT  250

seq1  GTTTCAAATTTTTATTAAGAAAATGATCCCTGTCCTCCTGGTTTGCACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAATTTTTATTAAGAAAATGATCCCTGTCCTCCTGGTTTGCACCG  300

seq1  GTTTCCTTTGGGTCCAAACTCGGAAGCCAGTCTCACAGCCTCCAGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTGGGTCCAAACTCGGAAGCCAGTCTCACAGCCTCCAGAGGAG  350

seq1  GCTCCACTCCCAGGTGCTCTACCACAACCAGGACCCCAGGAGCTTGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACTCCCAGGTGCTCTACCACAACCAGGACCCCAGGAGCTTGGTCA  400

seq1  CACCAGGATCTCAGGGTCTCAGAGGCAGTTTGACTCCCAGGAACTCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGATCTCAGGGTCTCAGAGGCAGTTTGACTCCCAGGAACTCTGAC  450

seq1  ATACCCAGAATCTCTGGATCACAAGATTCTGGAATCACAGGATCACAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGAATCTCTGGATCACAAGATTCTGGAATCACAGGATCACAGAG  500

seq1  ACAGCTGGGCTTTGAGGAGTTCTGACTCAACCAGGATTACAGGAAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGGCTTTGAGGAGTTCTGACTCAACCAGGATTACAGGAAGGACA  550

seq1  GGCTCCAGTCAGATATCGTAAAGGCAGGGGGGCACGAGAGATAACCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAGTCAGATATCGTAAAGGCAGGGGGGCACGAGAGATAACCAGGT  600

seq1  GGCTGGAGCTAAGCATAAGAAGCAACAGAAGCCAAGGTTACTTGGTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGCTAAGCATAAGAAGCAACAGAAGCCAAGGTTACTTGGTATCA  650

seq1  TCAGAACCTAATTCTCCCACCATAGCAAGTCTTGGAGACACCATCACACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCTAATTCTCCCACCATAGCAAGTCTTGGAGACACCATCACACC  700

seq1  AGAAAAGCAAGACTTGGATCTAAAGTCAGGTCTCATGAGGATGACAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCAAGACTTGGATCTAAAGTCAGGTCTCATGAGGATGACAGAGG  750

seq1  ACTTTAAGAAGGACATAAATAACTCCCTTA  780
      ||||||||||||||||||||||||||||||
seq2  ACTTTAAGAAGGACATAAATAACTCCCTTA  780