BAC Information

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BAC

Clone NameB6Ng01-048L14
Chromosome10 (Build37)
Map Location 28,166,957 - 28,281,228
singlet/doubletdoublet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L14.bB6Ng01-048L14.g
ACCDH873198DH873199
length1,1161,100
definitionDH873198|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L14, 5' end.DH873199|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,280,051 - 28,281,228)(28,166,957 - 28,168,075)
sequence
gaattccaaaataactaacagtatgtctaactttatttggtatggatata
cactagaaaatgacagccaacaattcctgaaatttttcatcaagctaaag
ttttccaccaaccccccaccaaaaatcccccttgtgaaatgacacagact
tataacctaaaatgttgtgtaaacttgctattccctatgcttatagttag
catagaatatgagttcttttatttgcttcttgtccccttacatgcatgtt
taccaagttaggatcaaacctgttacagaaatgtcctatatatgaaatgc
taatgacaaacttgatttgtccatctctagcatcaattttactggaagat
tcgaagaaattaattaggcacattaacttaaatttaaataaacacaaaac
tttgaaagggaataattttcataggatattcaaattatgtaattattcaa
atcctctgtgcttaagtgggacttcaatagagatattttaaaagcaaatc
cttcataggtcaacattagtaattctagaagaatctatgtacagggaaat
gggaaaatgaatgcaaatgttatttcatcaagcatttcaagccagtcagc
acaactacacttttagatttcatactccataccaatttcggcaattctag
ctagtcagcttgccctggggacccactcctgaatgtcaaccaagtgttag
gattacaggtggctacacacatacctgggcctttatgagggttctgctgt
tctgagctccagttttcctgcccgtctggtaagttctttatccatgaact
tacctccctatctctagttaactttttggtattggagttcttcagaacta
atactagatttccttaatggaacattacttatgccattaatgcctaagaa
agaattattgttttattatttcaaatgacccttatcttctataagaaaat
ataatacacacacatttattagaatgacatttactatcatgacacattct
tcagtatgctctagtctgatgtctacgattcatacaatcctagtgagtta
ctagctgtaccactgaaccatgtcttttattcaataacgtcagtgggtta
ctctaactgctctgac
gaattctctaaagtatgagtagtacgctacagttccatttctaaaagtct
tatgtgctgagcaaatatttctcgcagccagatgtctgattcatcaagat
ttatttcaccattcatgtgcagagatagtgagagaacagagctaacatta
gaggaataaatttattaaagctgtaaaacttttaccaacaccttccccct
ccgtcttcacaggtgaaattgagcatccattcagtcgtaagtcatttata
gccatcctccctgtgtatgagatatcatgctggattctggggatatataa
atggaaatgaagttagaggtactcatagtccacaaagaggaatgggaata
taaaccgatagtttaaaaaatataagatctgtgatacattatcagaacat
attcgctgtctgagtgaggagttgtgggtgcacagggcccttgatttaag
tggcattaaaggttggtaaggaaagttagccaggggcacgagtatgtgat
agagcatccgtcttaatattagaagaaatatcaaggaatgtatcttgggg
atggagactccatgtggccatgagtggctgtatgtggaagaaaaggaaag
cagttttgcaaaaagataataaagtaaactgagccttcatctctgaggaa
tttgtgcactttgctatggaattttcctggggataggttcgtcgccattt
tactatttaatagtgggataagggatactttaatggaacttagaaaacac
aatcccagggctggaggagagctcagcaggagcagctttctgttctaagc
ctgacgacttgaattcaatctctggtacctaaagacagacagagaaaaac
acttccacacaatgtcctctgaccacccgcacacacccacataaatactc
aggagcccacacaagcgatggggtctaattttttaaatggaaataggact
ataatacgtctgtcctgtggtaccattgggaatgtggacatcatataatt
ttgggtgagctaggggaactactgaagaacaggaaaatctacctcgggtc
ttctctttatcttctaacttcagtagtactcgaaattaggccgatgaaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28280051_28281228
seq2: B6Ng01-048L14.b_44_1159 (reverse)

seq1  GTCAGAGAAGCAGTTAGGGAGAGTAAAACACAACTGACGTTATTTTGGAA  50
      |||||   |||||||    |||||||    | ||||||||||||   |||
seq2  GTCAG---AGCAGTT----AGAGTAA---CCCACTGACGTTATT---GAA  37

seq1  TTTACAAAAAGACATGTGTTCAGTTTTGGTACAGGGTTTAGTTTAACTTC  100
      |     |||||||||| ||||||   ||||||||    |||  |||||  
seq2  T-----AAAAGACATG-GTTCAG---TGGTACAG---CTAG--TAACT--  71

seq1  AAACTAGGGATTTTGTTATGAAATCGTAAGAAACATTCAGAACATAGAGC  150
        |||| |||||    |||| ||||||   | ||| |||||   ||||| 
seq2  -CACTA-GGATT---GTATG-AATCGT---AGACA-TCAGA--CTAGAG-  108

seq1  CATACTGACAGAATGTGTCATTGAATTATGTTAAAATGTCATTTTCTATA  200
      |||||||| ||||||||||| |||  || ||  ||||||||  ||||| |
seq2  CATACTGA-AGAATGTGTCA-TGA--TA-GT--AAATGTCA--TTCTA-A  148

seq1  TAAAATTGGTGTGTGTTATTTATATTTTTTCTTTATAGAAGATAAGGGTT  250
      ||||     |||||||   |||||||||    |||||||||||||||| |
seq2  TAAA-----TGTGTGTGTATTATATTTT---CTTATAGAAGATAAGGG-T  189

seq1  CATTTGAAATAATAAAAAACAATAATTCTTTC-TAGGCATTAATGGCATA  299
      |||||||||||||  ||||||||||||||||| |||||||||||||||||
seq2  CATTTGAAATAAT--AAAACAATAATTCTTTCTTAGGCATTAATGGCATA  237

seq1  AGTAATTGTTCCATTAAGGAAATCTAGTATTAGTTCTGAAGAACTCCAAT  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAA-TGTTCCATTAAGGAAATCTAGTATTAGTTCTGAAGAACTCCAAT  286

seq1  ACCAAAAAGTTAACTAGAGATAGGGAGGTAAGTTCATGGATAAAGAACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAGTTAACTAGAGATAGGGAGGTAAGTTCATGGATAAAGAACTT  336

seq1  ACCAGACGGGCAGGAAAACTGGAGCTCAGAACAGCAGAACCCTCATAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACGGGCAGGAAAACTGGAGCTCAGAACAGCAGAACCCTCATAAAG  386

seq1  G-CCAGGTATGTGTGTAGCCACCTGTAATCCTAACACTTGGTTGACATTC  498
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTATGTGTGTAGCCACCTGTAATCCTAACACTTGGTTGACATTC  436

seq1  AGGAGTGGGTCCCCAGGGCAAGCTGACTAGCTAGAATTGCCGAAATTGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGGTCCCCAGGGCAAGCTGACTAGCTAGAATTGCCGAAATTGGT  486

seq1  ATGGAGTATGAAATCTAAAAGTGTAGTTGTGCTGACTGGCTTGAAATGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTATGAAATCTAAAAGTGTAGTTGTGCTGACTGGCTTGAAATGCT  536

seq1  TGATGAAATAACATTTGCATTCATTTTCCCATTTCCCTGTACATAGATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAATAACATTTGCATTCATTTTCCCATTTCCCTGTACATAGATTC  586

seq1  TTCTAGAATTACTAATGTTGACCTATGAAGGATTTGCTTTTAAAATATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAATTACTAATGTTGACCTATGAAGGATTTGCTTTTAAAATATCT  636

seq1  CTATTGAAGTCCCACTTAAGCACAGAGGATTTGAATAATTACATAATTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAAGTCCCACTTAAGCACAGAGGATTTGAATAATTACATAATTTG  686

seq1  AATATCCTATGAAAATTATTCCCTTTCAAAGTTTTGTGTTTATTTAAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTATGAAAATTATTCCCTTTCAAAGTTTTGTGTTTATTTAAATT  736

seq1  TAAGTTAATGTGCCTAATTAATTTCTTCGAATCTTCCAGTAAAATTGATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAATGTGCCTAATTAATTTCTTCGAATCTTCCAGTAAAATTGATG  786

seq1  CTAGAGATGGACAAATCAAGTTTGTCATTAGCATTTCATATATAGGACAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGATGGACAAATCAAGTTTGTCATTAGCATTTCATATATAGGACAT  836

seq1  TTCTGTAACAGGTTTGATCCTAACTTGGTAAACATGCATGTAAGGGGACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAACAGGTTTGATCCTAACTTGGTAAACATGCATGTAAGGGGACA  886

seq1  AGAAGCAAATAAAAGAACTCATATTCTATGCTAACTATAAGCATAGGGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAATAAAAGAACTCATATTCTATGCTAACTATAAGCATAGGGAA  936

seq1  TAGCAAGTTTACACAACATTTTAGGTTATAAGTCTGTGTCATTTCACAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGTTTACACAACATTTTAGGTTATAAGTCTGTGTCATTTCACAAG  986

seq1  GGGGATTTTTGGTGGGGGGTTGGTGGAAAACTTTAGCTTGATGAAAAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTTTTGGTGGGGGGTTGGTGGAAAACTTTAGCTTGATGAAAAATT  1036

seq1  TCAGGAATTGTTGGCTGTCATTTTCTAGTGTATATCCATACCAAATAAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATTGTTGGCTGTCATTTTCTAGTGTATATCCATACCAAATAAAG  1086

seq1  TTAGACATACTGTTAGTTATTTTGGAATTC  1178
      ||||||||||||||||||||||||||||||
seq2  TTAGACATACTGTTAGTTATTTTGGAATTC  1116

seq1: chr10_28166957_28168075
seq2: B6Ng01-048L14.g_69_1168

seq1  GAATTCTCTAAAGTATGAGTAGTACGCTACAGTTCCATTTCTAAAAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAAGTATGAGTAGTACGCTACAGTTCCATTTCTAAAAGTCT  50

seq1  TATGTGCTGAGCAAATATTTCTCGCAGCCAGATGTCTGATTCATCAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTGAGCAAATATTTCTCGCAGCCAGATGTCTGATTCATCAAGAT  100

seq1  TTATTTCACCATTCATGTGCAGAGATAGTGAGAGAACAGAGCTAACATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCACCATTCATGTGCAGAGATAGTGAGAGAACAGAGCTAACATTA  150

seq1  GAGGAATAAATTTATTAAAGCTGTAAAACTTTTACCAACACCTTCCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATAAATTTATTAAAGCTGTAAAACTTTTACCAACACCTTCCCCCT  200

seq1  CCGTCTTCACAGGTGAAATTGAGCATCCATTCAGTCGTAAGTCATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTTCACAGGTGAAATTGAGCATCCATTCAGTCGTAAGTCATTTATA  250

seq1  GCCATCCTCCCTGTGTATGAGATATCATGCTGGATTCTGGGGATATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTCCCTGTGTATGAGATATCATGCTGGATTCTGGGGATATATAA  300

seq1  ATGGAAATGAAGTTAGAGGTACTCATAGTCCACAAAGAGGAATGGGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATGAAGTTAGAGGTACTCATAGTCCACAAAGAGGAATGGGAATA  350

seq1  TAAACCGATAGTTTAAAAAATATAAGATCTGTGATACATTATCAGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCGATAGTTTAAAAAATATAAGATCTGTGATACATTATCAGAACAT  400

seq1  ATTCGCTGTCTGAGTGAGGAGTTGTGGGTGCACAGGGCCCTTGATTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCTGTCTGAGTGAGGAGTTGTGGGTGCACAGGGCCCTTGATTTAAG  450

seq1  TGGCATTAAAGGTTGGTAAGGAAAGTTAGCCAGGGGCACGAGTATGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAAAGGTTGGTAAGGAAAGTTAGCCAGGGGCACGAGTATGTGAT  500

seq1  AGAGCATCCGTCTTAATATTAGAAGAAATATCAAGGAATGTATCTTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCCGTCTTAATATTAGAAGAAATATCAAGGAATGTATCTTGGGG  550

seq1  ATGGAGACTCCATGTGGCCATGAGTGGCTGTATGTGGAAGAAAAGGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACTCCATGTGGCCATGAGTGGCTGTATGTGGAAGAAAAGGAAAG  600

seq1  CAGTTTTGCAAAAAGATAATAAAGTAAACTGAGCCTTCATCTCTGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGCAAAAAGATAATAAAGTAAACTGAGCCTTCATCTCTGAGGAA  650

seq1  TTTGTGCACTTTGCTATGGAATTTTCCTGGGGATAGGTTCGTCGCCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCACTTTGCTATGGAATTTTCCTGGGGATAGGTTCGTCGCCATTT  700

seq1  TACTATTTAATAGTGGGATAAGGGATACTTTAATGGAACTTAGAAAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTAATAGTGGGATAAGGGATACTTTAATGGAACTTAGAAAACAC  750

seq1  AATCCCAGGGCTGGAGGAAGAGCTCAGCAGGAGCAGCTTTCTGTTCTAAG  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATCCCAGGGCTGGAGG-AGAGCTCAGCAGGAGCAGCTTTCTGTTCTAAG  799

seq1  CCTGACGACCTGAATTCAATCTCTGGTACCTAAAAGACAGACAGAGAAAA  850
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  CCTGACGACTTGAATTCAATCTCTGGTACCT-AAAGACAGACAGAGAAAA  848

seq1  ACAACTTCCACACAATGTCCTCTGACCACCCGCACACACCCACATAAATA  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-ACTTCCACACAATGTCCTCTGACCACCCGCACACACCCACATAAATA  897

seq1  CCCAGAAACACACACAAAACAGATAGAGTCTTAATTTTTTAAAAATGAAA  950
      | ||| | | |||||  ||  ||| | ||| ||||||||| |||  ||||
seq2  CTCAGGAGCCCACAC--AAGCGATGGGGTC-TAATTTTTT-AAATGGAAA  943

seq1  TAGAACTATAAATACGTTCTGTCCTGT-GTACCATTGGGAATGT-GACAT  998
      ||| ||||| |||||| |||||||||| |||||||||||||||| |||||
seq2  TAGGACTAT-AATACG-TCTGTCCTGTGGTACCATTGGGAATGTGGACAT  991

seq1  CATAATAATTTTTGTGTAGCCTTAGGGGAACTACTGACAGACAGAAAAAT  1048
      ||| |||||||| |   |||  |||||||||||||||   |||| |||| 
seq2  CAT-ATAATTTTGGGTGAGC--TAGGGGAACTACTGAAGAACAGGAAAA-  1037

seq1  TCTA-CTCTGGTCTTTCTCTTTTATCTTTCTAACCTATCAAGTAGTAACT  1097
      |||| ||| |||| ||||| |||||| |||||||   |  |||||| |||
seq2  TCTACCTCGGGTC-TTCTC-TTTATC-TTCTAAC---TTCAGTAGT-ACT  1080

seq1  CAGAATTATAGGCCGATGAAAA  1119
      |  |||  ||||||||||||||
seq2  CGAAAT--TAGGCCGATGAAAA  1100