BAC Information

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BAC

Clone NameB6Ng01-049C13
Chromosome10 (Build37)
Map Location 109,958,751 - 110,083,573
singlet/doubletdoublet
Overlap gene9230102K24Rik, LOC100042518
Upstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855
Downstream geneE2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049C13.bB6Ng01-049C13.g
ACCDH873501DH873502
length841980
definitionDH873501|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C13, 5' end.DH873502|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,958,751 - 109,959,590)(110,083,026 - 110,083,573)
sequence
gaattcaaaactggatagaactatactctgaatgcacagacacagcataa
atatcgctaaattcattcatcattcattcatcagattaaaagcatcttta
catcattattatgatccaggaggtctgcctggcaccaggaattctagacg
gatgtggctccttttagtgaaggaaccaggttattaaaacatatagtgat
gaatgggacagtagagatctagaaaacaaacatccaacagagatggaagg
gggtgggagaaggattcttgctaaactgagaacagccggctgagaagtca
tccaagaaaaaaagagcaagaggaagaaaaacagaaatggcaagaagtga
gggttggattgagaagggcctctgacctctccactaagtgagagtcccct
ctcctatttccttcctgcctccttccaaaaagatactgccttggaagatg
agttcaatgacaacagttgataactgtgccccatcacaaccacgtacatt
cttgcagcttcccaatagccaaatgaagttggagcaaatgaaattgcaca
tggatgtacccatcggggttgggctcaccaccatcagttgatctatgcat
tgtacccatatatggttttctgtgatggtctctattcatggtaaatagag
gcttctttgatgagaggtggtagccagacttatctgtgggtataagggta
ggatttagaatgcattaagtaattatgctagtctaacaaagcagaggtaa
aagattctttattaaggtatatgacctcactagctctaggaggttggtta
gatttttttagtacccagcatgattttcctcctgttgagtg
gaattcttccttcttttaagtaatggtctacacacacctgtagtacctga
gtgtaggcttagatatttaagaacctacttttaataagggttctcaaaaa
cacttagatgacccccccttctagtccaccttctaaaggtaagggagaaa
agatggtaaataagacaagaatatgtggacctgtttagctatagctcctg
ggtgcaattccaatctctgttcaccaggtgagtccacttagtagtgtcag
aataagcagaagcagtagcaggatctagcagaaaccgccagggctctgcc
gaatcagcaggagtgactaggacttgatgtgcctttctcaatcaggagga
ctcaagactaagctgttgcaaagctagctaagcaagctgtcttacttagg
gttttactgctgtgaagagacaccatggccaaggcaactcttataaggac
aacatttaattggagctggctcgcaggttcagaggttcagttcagtatca
tcaaggcgggagcatggcagcatccaggcaggcctggtgtaggagttgct
gagagttctacattttcatctgaaggctgctagtagaagactggcttcca
ggcagctaggaggagggtcttaaagcccacactcacagtgacacacctac
tccaacatggccacacctccaaatagtgccactccctgggccaagcatat
tgaaactgtgatacagtttgtactttctccaaacagcacatgtcctccca
cgggtcttgcctcagcaaaatacatcaggcagctttaacatgtgagtcta
tatcacctgacatatccagaaacttccattcacctgcgtttcacttactt
tattggattacaacagcttaatcgcctgttgcattaattgagcccaagtc
tactagtcaggtatataattgagctaatgtcaggatggtgccttgcttac
agagggcctcaaacatatttactgaggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109958751_109959590
seq2: B6Ng01-049C13.b_47_887

seq1  GAATTCAAAACTGGATAGAACTATACTCTGAATGCACAGACACAGCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTGGATAGAACTATACTCTGAATGCACAGACACAGCATAA  50

seq1  ATATCGCTAAATTCATTCATCATTCATTCATCAGATTAAAAGCATCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGCTAAATTCATTCATCATTCATTCATCAGATTAAAAGCATCTTTA  100

seq1  CATCATTATTATGATCCAGGAGGTCTGCCTGGCACCAGGAATTCTAGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTATTATGATCCAGGAGGTCTGCCTGGCACCAGGAATTCTAGACG  150

seq1  GATGTGGCTCCTTTTAGTGAAGGAACCAGGTTATTAAAACATATAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGCTCCTTTTAGTGAAGGAACCAGGTTATTAAAACATATAGTGAT  200

seq1  GAATGGGACAGTAGAGATCTAGAAAACAAACATCCAACAGAGATGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGACAGTAGAGATCTAGAAAACAAACATCCAACAGAGATGGAAGG  250

seq1  GGGTGGGAGAAGGATTCTTGCTAAACTGAGAACAGCCGGCTGAGAAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAGAAGGATTCTTGCTAAACTGAGAACAGCCGGCTGAGAAGTCA  300

seq1  TCCAAGAAAAAAAGAGCAAGAGGAAGAAAAACAGAAATGGCAAGAAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAAAAAAGAGCAAGAGGAAGAAAAACAGAAATGGCAAGAAGTGA  350

seq1  GGGTTGGATTGAGAAGGGCCTCTGACCTCTCCACTAAGTGAGAGTCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGATTGAGAAGGGCCTCTGACCTCTCCACTAAGTGAGAGTCCCCT  400

seq1  CTCCTATTTCCTTCCTGCCTCCTTCCAAAAAGATACTGCCTTGGAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATTTCCTTCCTGCCTCCTTCCAAAAAGATACTGCCTTGGAAGATG  450

seq1  AGTTCAATGACAACAGTTGATAACTGTGCCCCATCACAACCACGTACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATGACAACAGTTGATAACTGTGCCCCATCACAACCACGTACATT  500

seq1  CTTGCAGCTTCCCAATAGCCAAATGAAGTTGGAGCAAATGAAATTGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGCTTCCCAATAGCCAAATGAAGTTGGAGCAAATGAAATTGCACA  550

seq1  TGGATGTACCCATCGGGGTTGGGCTCACCACCATCAGTTGATCTATGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTACCCATCGGGGTTGGGCTCACCACCATCAGTTGATCTATGCAT  600

seq1  TGTACCCATATATGGTTTTCTGTGATGGTCTCTATTCATGGTAAATAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCATATATGGTTTTCTGTGATGGTCTCTATTCATGGTAAATAGAG  650

seq1  GCTTCTTTGATGAGAGGTGGTAGCCAGACTTATCTGTGGGTATAAGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTGATGAGAGGTGGTAGCCAGACTTATCTGTGGGTATAAGGGTA  700

seq1  GGATTTAGAATGCATTAAGTAATTATGCTAGTCTAACAAAGCAGAGGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAGAATGCATTAAGTAATTATGCTAGTCTAACAAAGCAGAGGTAA  750

seq1  AAGATTCTTTATTAAGGTATATGACCTCACTAGCTCTAGGAGGTTGGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTTTATTAAGGTATATGACCTCACTAGCTCTAGGAGGTTGGTTA  800

seq1  GA-TTTTTTAGTACCAAGCATGATTTTCCTCCTGTTAAGTG  840
      || |||||||||||| |||||||||||||||||||| ||||
seq2  GATTTTTTTAGTACCCAGCATGATTTTCCTCCTGTTGAGTG  841

seq1: chr10_110083026_110083573
seq2: B6Ng01-049C13.g_70_617 (reverse)

seq1  CAACTCCTACACCAGGCCTGCCTGGATGCTGCCATGCTCCCGCCTTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTACACCAGGCCTGCCTGGATGCTGCCATGCTCCCGCCTTGATG  50

seq1  ATACTGAACTGAACCTCTGAACCTGCGAGCCAGCTCCAATTAAATGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAACTGAACCTCTGAACCTGCGAGCCAGCTCCAATTAAATGTTGT  100

seq1  CCTTATAAGAGTTGCCTTGGCCATGGTGTCTCTTCACAGCAGTAAAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAAGAGTTGCCTTGGCCATGGTGTCTCTTCACAGCAGTAAAACCC  150

seq1  TAAGTAAGACAGCTTGCTTAGCTAGCTTTGCAACAGCTTAGTCTTGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGACAGCTTGCTTAGCTAGCTTTGCAACAGCTTAGTCTTGAGTC  200

seq1  CTCCTGATTGAGAAAGGCACATCAAGTCCTAGTCACTCCTGCTGATTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATTGAGAAAGGCACATCAAGTCCTAGTCACTCCTGCTGATTCGG  250

seq1  CAGAGCCCTGGCGGTTTCTGCTAGATCCTGCTACTGCTTCTGCTTATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCTGGCGGTTTCTGCTAGATCCTGCTACTGCTTCTGCTTATTCT  300

seq1  GACACTACTAAGTGGACTCACCTGGTGAACAGAGATTGGAATTGCACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTACTAAGTGGACTCACCTGGTGAACAGAGATTGGAATTGCACCCA  350

seq1  GGAGCTATAGCTAAACAGGTCCACATATTCTTGTCTTATTTACCATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATAGCTAAACAGGTCCACATATTCTTGTCTTATTTACCATCTTT  400

seq1  TCTCCCTTACCTTTAGAAGGTGGACTAGAAGGGGGGGTCATCTAAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTACCTTTAGAAGGTGGACTAGAAGGGGGGGTCATCTAAGTGTT  450

seq1  TTTGAGAACCCTTATTAAAAGTAGGTTCTTAAATATCTAAGCCTACACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAACCCTTATTAAAAGTAGGTTCTTAAATATCTAAGCCTACACTC  500

seq1  AGGTACTACAGGTGTGTGTAGACCATTACTTAAAAGAAGGAAGAATTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTACAGGTGTGTGTAGACCATTACTTAAAAGAAGGAAGAATTC  548