BAC Information

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BAC

Clone NameB6Ng01-049D16
Chromosome10 (Build37)
Map Location 52,933,600 - 53,057,676
singlet/doubletdoublet
Overlap genePln
Upstream geneDcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
Downstream geneEG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049D16.bB6Ng01-049D16.g
ACCDH873553DH873554
length1,0961,146
definitionDH873553|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D16, 5' end.DH873554|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,056,575 - 53,057,676)(52,933,600 - 52,934,761)
sequence
gaattcttttaagagtttaataagattgaatatcagaaagtaagaatgtc
caaagtcaatgatctcacgtcttaccttggcttcggtgatcgtcacagtg
cagagcatgaagctgtatgaagtcttatgggagcttagctgggcagtttt
ctgttcccaggtttatgggagcagctgcagtaggtggaggagaaaaagga
ttctagggaggtcttatgacatcacgtaggaattctaacatgtgattggt
tagccatgttcttatcacaaccaaaccttagaacttattttatgttaggt
ttggaaatgccattaacactttgtgctttgcttttagtttttaacttaaa
aatgtgtataacagataactgagaataaagtaagtttgaagatactgctt
tatagtaggtagctttccttaaagagttataagtcgtcagacttggagat
agttacacactgctgttggagtggaagagctaacatagttgtgaaggaat
gcaggtagcttgggagggataatgtaggctcaacagaggcagggttaatg
gagctgccctcgcagagccttgcttgtcagagcagcaaacattctcaggt
gatatttgatgcctttccttgtcttatttatgtttgtgtttcacatctgt
ctaggtattgctgtctaggtaagagaatgaatgcataaaagaaaactagg
tcaatactttgtgttttgaaaaagaaatttatagttagaggagcaaatac
attcaacttacattttcttcagttaggttttcacccgtgctctgagaaat
gaatctgtatttcaatagctatgtattattccccagaaagatgcacttta
tacgtttaaggccttaggagttttctatagctacattgtattaccacaga
aaccaaataggttttagtaagctgacctagtgtcaggagtagcttttcta
gaaagatgagctgcaggtttctgtcagctgtatggcagtgtggcggtgct
gaccaggtcttcaggagatggaataagtgtccagtatttatttctggaag
gttttcacctatggagcatttttttggtcggaatgggagaaaaatt
gaattcaaacttccatggtacctagccttcctcaaccttcagacttgacc
aaaactaatgaaaaagtctgttcaggacaataattaaatctgtggtacat
caggagatgatctgaaaggacaatggtagaaagtcatcccaagagtggga
ttttgagcagcacacccagttattcactgtagctagaaggagggaaggcc
aaaagatcaattttgtggtggttctggtaatggtttctctggattgtcag
gggattggaaataacaacatagaaagactgggaacaggagctctgggctc
aatctctgtaaatgtgcagactctgaatgttgttgtgatcttaatctagt
aaggaaagtgtccatgctgcaagcaagaagataggtatgcatgattggta
taacaaatgttttatttattatgttgaggctcatcacacagagttcatgc
tctaaagttcctaaatgacatcctattttaggcttagctatttccccatg
gctgctcacctgtgtgacatcttagccaaaagtcaattccagcttctcac
agcagtctctaggttcaagggtcaaggtcccagtagagattctccagctg
taaggcagattagggtggcatctatctagcagacctgaagacgtacagag
cagagatttgctcttggtttctgcttatatactatccacttgacttcatg
gatgattatctttagcaaggtataacactgggctctggttatcaagtcta
accttgggtataatggagttcccaactaagttattttttatgtgtataaa
gggcatttttaactatactcatcacagcgtatatctttcctgggtttcat
ctttacaatcgcataaaaaggattgtcagctgtatacatgggtgcaagga
gttttcctttgtctgcccttcatttgctagtcttgcttctggcaatacat
ttcactggaggaaatgccatctcttcccatttttcactttgataattcaa
gatcaggctttttttctcaactttctagaggtgacttctaaagatagaat
ggtcccactaagttccaaatgtcctgcctctgaaactatgcctcactggg
agatttgctttactccaacttcaacgaatagatcctgacctatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53056575_53057676
seq2: B6Ng01-049D16.b_46_1141 (reverse)

seq1  AATTTTTCTCACATTTCAGACAAAAAAAAATGCTACATTAGGTGAAAAAC  50
      |||||||||| || ||| |||  ||||||||||| || |||||||||| |
seq2  AATTTTTCTCCCA-TTCCGAC-CAAAAAAATGCTCCA-TAGGTGAAAACC  47

seq1  TTTCAGAAATAAATACTGGACACTTATTTCATCTCTTGGAGACCTGGTCA  100
      || ||||||||||||||||||||||||| |||||| || |||||||||||
seq2  TTCCAGAAATAAATACTGGACACTTATTCCATCTCCTGAAGACCTGGTCA  97

seq1  GCACCGCCACACTGCCATACAGCTGACAGAAACCTGCAGCTCATCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCACCGCCACACTGCCATACAGCTGACAGAAACCTGCAGCTCATC-TTTC  146

seq1  TAGAAAAGCTACTCCTGACACTAGGTCAGCTTACTAAAAACCTATTTGGT  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGAAAAGCTACTCCTGACACTAGGTCAGCTTACT-AAAACCTATTTGGT  195

seq1  TTCTGTGGTAATACAATGTAGCTATAGAAAACTCTTAAGGCCTTAAACGT  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTGTGGTAATACAATGTAGCTATAGAAAACTCCTAAGGCCTTAAACGT  245

seq1  ATAAAGTGCATCTTTCTGGGGAATAATACATAGCTATTGAAATACAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTGCATCTTTCTGGGGAATAATACATAGCTATTGAAATACAGATT  295

seq1  CATTTCTCAGAGCACGGGTGAAAACCTTAACTGAAGAAAATGTAAGTTGA  350
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATTTCTCAGAGCACGGGTGAAAACC-TAACTGAAGAAAATGTAAGTTGA  344

seq1  ATGTATTTGCTCCTCTAACTATAAATTTCTTTTTCAAAACACAAAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGCTCCTCTAACTATAAATTTCTTTTTCAAAACACAAAGTATT  394

seq1  GACCTAGTTTTCTTTTATGCATTCATTCTCTTACCTAGACAGCAATACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGTTTTCTTTTATGCATTCATTCTCTTACCTAGACAGCAATACCT  444

seq1  AGACAGATGTGAAACACAAACATAAATAAGACAAGGAAAGGCATCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATGTGAAACACAAACATAAATAAGACAAGGAAAGGCATCAAATA  494

seq1  TCACCTGAGAATGTTTGCTGCTCTGACAAGCAAGGCTCTGCGAGGGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAGAATGTTTGCTGCTCTGACAAGCAAGGCTCTGCGAGGGCAGC  544

seq1  TCCATTAACCCTGCCTCTGTTGAGCCTACATTATCCCTCCCAAGCTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAACCCTGCCTCTGTTGAGCCTACATTATCCCTCCCAAGCTACCT  594

seq1  GCATTCCTTCACAACTATGTTAGCTCTTCCACTCCAACAGCAGTGTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCTTCACAACTATGTTAGCTCTTCCACTCCAACAGCAGTGTGTAA  644

seq1  CTATCTCCAAGTCTGACGACTTATAACTCTTTAAGGAAAGCTACCTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCAAGTCTGACGACTTATAACTCTTTAAGGAAAGCTACCTACTA  694

seq1  TAAAGCAGTATCTTCAAACTTACTTTATTCTCAGTTATCTGTTATACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGTATCTTCAAACTTACTTTATTCTCAGTTATCTGTTATACACA  744

seq1  TTTTTAAGTTAAAAACTAAAAGCAAAGCACAAAGTGTTAATGGCATTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTTAAAAACTAAAAGCAAAGCACAAAGTGTTAATGGCATTTCC  794

seq1  AAACCTAACATAAAATAAGTTCTAAGGTTTGGTTGTGATAAGAACATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAACATAAAATAAGTTCTAAGGTTTGGTTGTGATAAGAACATGGC  844

seq1  TAACCAATCACATGTTAGAATTCCTACGTGATGTCATAAGACCTCCCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAATCACATGTTAGAATTCCTACGTGATGTCATAAGACCTCCCTAG  894

seq1  AATCCTTTTTCTCCTCCACCTACTGCAGCTGCTCCCATAAACCTGGGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTTTCTCCTCCACCTACTGCAGCTGCTCCCATAAACCTGGGAAC  944

seq1  AGAAAACTGCCCAGCTAAGCTCCCATAAGACTTCATACAGCTTCATGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTGCCCAGCTAAGCTCCCATAAGACTTCATACAGCTTCATGCTC  994

seq1  TGCACTGTGACGATCACCGAAGCCAAGGTAAGACGTGAGATCATTGACTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTGACGATCACCGAAGCCAAGGTAAGACGTGAGATCATTGACTT  1044

seq1  TGGACATTCTTACTTTCTGATATTCAATCTTATTAAACTCTTAAAAGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATTCTTACTTTCTGATATTCAATCTTATTAAACTCTTAAAAGAAT  1094

seq1  TC  1102
      ||
seq2  TC  1096

seq1: chr10_52933600_52934761
seq2: B6Ng01-049D16.g_65_1210

seq1  GAATTCAAACTTCCATGGTACCTAGCCTTCCTCAACCTTCAGACTTGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTCCATGGTACCTAGCCTTCCTCAACCTTCAGACTTGACC  50

seq1  AAAACTAATGAAAAAGTCTGTTCAGGACAATAATTAAATCTGTGGTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAATGAAAAAGTCTGTTCAGGACAATAATTAAATCTGTGGTACAT  100

seq1  CAGGAGATGATCTGAAAGGACAATGGTAGAAAGTCATCCCAAGAGTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATGATCTGAAAGGACAATGGTAGAAAGTCATCCCAAGAGTGGGA  150

seq1  TTTTGAGCAGCACACCCAGTTATTCACTGTAGCTAGAAGGAGGGAAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGCAGCACACCCAGTTATTCACTGTAGCTAGAAGGAGGGAAGGCC  200

seq1  AAAAGATCAATTTTGTGGTGGTTCTGGTAATGGTTTCTCTGGATTGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCAATTTTGTGGTGGTTCTGGTAATGGTTTCTCTGGATTGTCAG  250

seq1  GGGATTGGAAATAACAACATAGAAAGACTGGGAACAGGAGCTCTGGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGAAATAACAACATAGAAAGACTGGGAACAGGAGCTCTGGGCTC  300

seq1  AATCTCTGTAAATGTGCAGACTCTGAATGTTGTTGTGATCTTAATCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGTAAATGTGCAGACTCTGAATGTTGTTGTGATCTTAATCTAGT  350

seq1  AAGGAAAGTGTCCATGCTGCAAGCAAGAAGATAGGTATGCATGATTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGTGTCCATGCTGCAAGCAAGAAGATAGGTATGCATGATTGGTA  400

seq1  TAACAAATGTTTTATTTATTATGTTGAGGCTCATCACACAGAGTTCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGTTTTATTTATTATGTTGAGGCTCATCACACAGAGTTCATGC  450

seq1  TCTAAAGTTCCTAAATGACATCCTATTTTAGGCTTAGCTATTTCCCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTTCCTAAATGACATCCTATTTTAGGCTTAGCTATTTCCCCATG  500

seq1  GCTGCTCACCTGTGTGACATCTTAGCCAAAAGTCAATTCCAGCTTCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCACCTGTGTGACATCTTAGCCAAAAGTCAATTCCAGCTTCTCAC  550

seq1  AGCAGTCTCTAGGTTCAAGGGTCAAGGTCCCAGTAGAGATTCTCCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTCTAGGTTCAAGGGTCAAGGTCCCAGTAGAGATTCTCCAGCTG  600

seq1  TAAGGCAGATTAGGGTGGCATCTATCTAGCAGACCTGAAGACGTACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAGATTAGGGTGGCATCTATCTAGCAGACCTGAAGACGTACAGAG  650

seq1  CAGAGATTTGCTCTTGGTTTCTGCTTATATACTATCCACTTGACTTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTTGCTCTTGGTTTCTGCTTATATACTATCCACTTGACTTCATG  700

seq1  GATGATTATCTTTAGCAAGGTATAACACTGGGCTCTGGTTATCAAGTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTATCTTTAGCAAGGTATAACACTGGGCTCTGGTTATCAAGTCTA  750

seq1  ACCTTGGGTATAATGGAGTTCCCAACTAAGTTATTTTTTATGTGTATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGTATAATGGAGTTCCCAACTAAGTTATTTTTTATGTGTATAAA  800

seq1  GGGCATTTTTAACTATACTCATCACAGCGTATATCTTTCCT-GGTTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGGCATTTTTAACTATACTCATCACAGCGTATATCTTTCCTGGGTTTCAT  850

seq1  CTTTACAATCGCATAAAAAGGATTGTCAGCTGTATACATGGGTGCAAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAATCGCATAAAAAGGATTGTCAGCTGTATACATGGGTGCAAGGA  900

seq1  GTTTTCCTTTTGTCTGCCCTTCCATTTTGCTAGTCTTGCTTCTGGCAATA  949
      ||||||| ||||||||||||||   |||||||||||||||||||||||||
seq2  GTTTTCC-TTTGTCTGCCCTTC--ATTTGCTAGTCTTGCTTCTGGCAATA  947

seq1  CATTTCACTGGAGGAAATTGCCATTCTCTTCCCATTTTTTCACTCTGATA  999
      ||||||||||||||||| ||||| |||||||||| ||||||||| |||||
seq2  CATTTCACTGGAGGAAA-TGCCA-TCTCTTCCCA-TTTTTCACTTTGATA  994

seq1  ATTCAAAGATTCAGGCTTTTTTTCTCAAACTTTCTAGAGTGTGAACTTCC  1049
      |||| |||| |||||||||||||||| |||||||||||| ||| |||| |
seq2  ATTC-AAGA-TCAGGCTTTTTTTCTC-AACTTTCTAGAG-GTG-ACTT-C  1038

seq1  TAGAGATAGAATGGTCCCACATAAGTTTTCAAAATGTCCTGCCTCTGATA  1099
      || ||||||||||||||||| ||||  ||| ||||||||||||||||| |
seq2  TAAAGATAGAATGGTCCCAC-TAAG--TTCCAAATGTCCTGCCTCTGAAA  1085

seq1  CTATGGCTCCACTGGGAGTTTTGCTTTACTCCAACTCAAACAGTATAGAT  1149
      ||||| || ||||||||| |||||||||||||||||  ||| | ||||||
seq2  CTATGCCT-CACTGGGAGATTTGCTTTACTCCAACTTCAAC-GAATAGAT  1133

seq1  CCTGAACTATGAA  1162
      ||||| |||||||
seq2  CCTGACCTATGAA  1146