BAC Information

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BAC

Clone NameB6Ng01-049F03
Chromosome10 (Build37)
Map Location 33,249,584 - 33,368,842
singlet/doubletdoublet
Overlap geneA330019N05Rik
Upstream geneTcba1, EG667761, Trdn
Downstream geneLOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049F03.bB6Ng01-049F03.g
ACCDH873620DH873621
length9281,061
definitionDH873620|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F03, 5' end.DH873621|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,249,584 - 33,250,401)(33,367,751 - 33,368,842)
sequence
gaattcatgatgtctcctttgtaaaccaggttaaaaatcatagctgagag
aagcatcaatgtatggatataaaaggaaaaaaaaaaccatatgttcctca
atggaagagtggctattttaattttgcatgaactttaagctaaactgtgc
caaattagaaagctaaaactaacagtagtaaataaatctagaaaaataat
acacactatttagaatacatttaagaaatgaaggcgagaattgcacccct
tcctatttgacaatactgtacctacaactcttaaatatacattaattaac
atagtaaatttatcatgaaaaaaatcacacaaatgtggtagagaaaattt
gtaataatatatataagaagagaatctacctgaactgtaaatgtacaaaa
taactccagtgatggggatgagtagaaatggttctgacctaaataactga
aaatgtgtagaatcagtaaacttgaaggaaaagagagatttcatgtgtac
tggttggttttgtatcaacttgacacaagctggagttatcacagaggaag
gagcttccagtgaggaaatgcctccatgaaatccaactgtaaggcatttt
ctcaattagtgatcatcagggaaggccccttgtgggtggtaccatctctg
ggctgataagcttgggttctataagaaagcaagctgagcaagtcagggaa
agcaagccagtaagtaacatctttccatggcttctgcatcagctcctgct
tcctgacctgcttgagttctagtcttgacttccttgctgatgaacagcaa
cactgaagtgtaagctgaataaattctttcctcccaatctggttcttggt
catgatgtttgttcaggaatagaaaccctgactggagacatcacataaac
acagcctctagtgataagatgtgctcat
gaattcctctttgaaatgttcaaatttctacagttgtgagtgatactagc
cctgagaatcttcctaggacacttgccagtcctgttttgaagaatgttga
gcagaaaggtctacccagcagagtaaaaaggtgctttaaacatagtaaag
ctaaagacagagagatgaagaagcaattaaatgagataactggaatccta
aacacttcatatgggtgaaggaaatacagagaatgaacagtttatcatga
tctttatacccggtttactaaatttgtgtagcctggaaaacttgcccagg
tgtcacatgacagcccttgtttcaatacaatgcaccattcagttgtctgt
aaaaaatgaaataaaaaacataacaggttcacaacgcctcataaatggag
gatgatgacatttgataccccgttcttactgcactagtggcaagtttgca
agaactgagaatttgtttgtttgttttctgggtttgaaatcttgttgtct
ttgagtgttgcactgacaactggaggccaggctatggaatccccagtcac
tggaagagaccgagggtgctatgacacaactttaaagggtcataattttg
tgttttttctccccctaaggcaagttcaaagcttggctataatggtataa
gtgtttcttctatccttcactcagttgttttccttcacatagtcttattc
catgaaaatttaggatctcagggcactaaaagtaattcctctctaagcat
caagacatgcacatgaacccttatcaggcatttccttggtcaagcattct
ttggactccatttcagctttcctgatttccatacattaccgtatcacata
aagagtctctctctctcttctctctctctctcatcttcatagctcatttt
cagacataagagaggatatgctatatatggatggggtagctttctgtagt
atgagtcatttatgggtcatactagtactggagacatgagtctgctttct
gttggattggattgttggcatcaggaatagtatcaaggtgttataattgt
tcatcaactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33249584_33250401
seq2: B6Ng01-049F03.b_45_861

seq1  GAATTCATGATGTCTCCTTTGTAAACCAGGTTAAAAATCATAGCTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGTCTCCTTTGTAAACCAGGTTAAAAATCATAGCTGAGAG  50

seq1  AAGCATCAATGTATGGATATAAAAGGAAAAAAAAAACCATATGTTCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCAATGTATGGATATAAAAGGAAAAAAAAAACCATATGTTCCTCA  100

seq1  ATGGAAGAGTGGCTATTTTAATTTTGCATGAACTTTAAGCTAAACTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAGTGGCTATTTTAATTTTGCATGAACTTTAAGCTAAACTGTGC  150

seq1  CAAATTAGAAAGCTAAAACTAACAGTAGTAAATAAATCTAGAAAAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGAAAGCTAAAACTAACAGTAGTAAATAAATCTAGAAAAATAAT  200

seq1  ACACACTATTTAGAATACATTTAAGAAATGAAGGCGAGAATTGCACCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTATTTAGAATACATTTAAGAAATGAAGGCGAGAATTGCACCCCT  250

seq1  TCCTATTTGACAATACTGTACCTACAACTCTTAAATATACATTAATTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTGACAATACTGTACCTACAACTCTTAAATATACATTAATTAAC  300

seq1  ATAGTAAATTTATCATGAAAAAAATCACACAAATGTGGTAGAGAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAATTTATCATGAAAAAAATCACACAAATGTGGTAGAGAAAATTT  350

seq1  GTAATAATATATATAAGAAGAGAATCTACCTGAACTGTAAATGTACAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATATATATAAGAAGAGAATCTACCTGAACTGTAAATGTACAAAA  400

seq1  TAACTCCAGTGATGGGGATGAGTAGAAATGGTTCTGACCTAAATAACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGTGATGGGGATGAGTAGAAATGGTTCTGACCTAAATAACTGA  450

seq1  AAATGTGTAGAATCAGTAAACTTGAAGGAAAAGAGAGATTTCATGTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTAGAATCAGTAAACTTGAAGGAAAAGAGAGATTTCATGTGTAC  500

seq1  TGGTTGGTTTTGTATCAACTTGACACAAGCTGGAGTTATCACAGAGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTTTGTATCAACTTGACACAAGCTGGAGTTATCACAGAGGAAG  550

seq1  GAGCTTCCAGTGAGGAAATGCCTCCATGAAATCCAACTGTAAGGCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCCAGTGAGGAAATGCCTCCATGAAATCCAACTGTAAGGCATTTT  600

seq1  CTCAATTAGTGATCATCAGGGAAGGCCCCTTGTGGGTGGTACCATCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTAGTGATCATCAGGGAAGGCCCCTTGTGGGTGGTACCATCTCTG  650

seq1  GGCTGATAAGCTTGGGTTCTATAAGAAAGCAAGCTGAGCAAGTCAGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATAAGCTTGGGTTCTATAAGAAAGCAAGCTGAGCAAGTCAGGGAA  700

seq1  AGCAAGCCAGTAAGTAACATCTTTCCATGGCTTCTGCATCAGCTCCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCAGTAAGTAACATCTTTCCATGGCTTCTGCATCAGCTCCTGCT  750

seq1  TCCTGACCTGCTTGAGTTCTAGTCTTGACTTCCTTTGCTGATGAACAGCA  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCTGACCTGCTTGAGTTCTAGTCTTGACTTCC-TTGCTGATGAACAGCA  799

seq1  ACACTGAAGTGTAAGCTG  818
      ||||||||||||||||||
seq2  ACACTGAAGTGTAAGCTG  817

seq1: chr10_33367751_33368842
seq2: B6Ng01-049F03.g_65_1125 (reverse)

seq1  CCAGTTTTGGATGAAAAAAATTAATAACACCTTTGATAATCTATTCACTG  50
      ||||||   |||||| ||   | |||||||| ||||||  |||||| |||
seq2  CCAGTT---GATGAACAA---TTATAACACC-TTGATA--CTATTC-CTG  40

seq1  ATGCCAAAACAAAATTCAATTCAACAGAAAAGCAGACTCATTGTCT-CAG  99
      ||||||    | ||| |||| |||||| |||||||||||| ||||| |||
seq2  ATGCCA----ACAATCCAATCCAACAG-AAAGCAGACTCA-TGTCTCCAG  84

seq1  TACTAGTTATGGACCAATTAAATGACTCATACTAAACAGAAAGCTAACCC  149
      |||||| ||||  |||  |||||||||||||||  |||||||||| ||||
seq2  TACTAG-TATGACCCA--TAAATGACTCATACT--ACAGAAAGCT-ACCC  128

seq1  AATCCATATAATAAGCAATATCCTCTCTTTATTGTCTTGAAAATGGAGCT  199
       |||||||||   ||| ||||||||||||   |||| ||||||| |||||
seq2  CATCCATATA--TAGC-ATATCCTCTCTT--ATGTC-TGAAAAT-GAGCT  171

seq1  ATGAAGATGGAGAGAGAGAGAGAAAGAGAGAGAGAGACTCTTTATGTGAT  249
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  ATGAAGAT-GAGAGAGAGAGAG-AAGAGAGAGAGAGACTCTTTATGTGAT  219

seq1  ACGGTAATGTATTGGAAATCAGGAAAGCTGAAATGGAGTCCAAAGAATGC  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAATGTA-TGGAAATCAGGAAAGCTGAAATGGAGTCCAAAGAATGC  268

seq1  TTGACCAAGGAAATGCCTGATAAGGGTTCATGTGCATGTCCTGATGCTTA  349
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGACCAAGGAAATGCCTGATAAGGGTTCATGTGCATGTCTTGATGCTTA  318

seq1  GAGAGGAATTACTTTTAGTGCCCTGAGATCCTAAATTTTCATGGAATAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAATTACTTTTAGTGCCCTGAGATCCTAAATTTTCATGGAATAAG  368

seq1  ACTATGTGAAGGAAAACAACTGAGTGAAGGATAGAAGAAACACTTATACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTGAAGGAAAACAACTGAGTGAAGGATAGAAGAAACACTTATACC  418

seq1  ATTATAGCCAAGCTTTGAACTTGCCTTAGGGGGAGAAAAAACACAAAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGCCAAGCTTTGAACTTGCCTTAGGGGGAGAAAAAACACAAAATT  468

seq1  ATGACCCTTTAAAGTTGTGTCATAGCACCCTCGGTCTCTTCCAGTGACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTTTAAAGTTGTGTCATAGCACCCTCGGTCTCTTCCAGTGACTG  518

seq1  GGGATTCCATAGCCTGGCCTCCAGTTGTCAGTGCAACACTCAAAGACAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCCATAGCCTGGCCTCCAGTTGTCAGTGCAACACTCAAAGACAAC  568

seq1  AAGATTTCAAACCCAGAAAACAAACAAACAAATTCTCAGTTCTTGCAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCAAACCCAGAAAACAAACAAACAAATTCTCAGTTCTTGCAAAC  618

seq1  TTGCCACTAGTGCAGTAAGAACGGGGTATCAAATGTCATCATCCTCCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACTAGTGCAGTAAGAACGGGGTATCAAATGTCATCATCCTCCATT  668

seq1  TATGAGGCGTTGTGAACCTGTTATGTTTTTTATTTCATTTTTTACAGACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGCGTTGTGAACCTGTTATGTTTTTTATTTCATTTTTTACAGACA  718

seq1  ACTGAATGGTGCATTGTATTGAAACAAGGGCTGTCATGTGACACCTGGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGGTGCATTGTATTGAAACAAGGGCTGTCATGTGACACCTGGGC  768

seq1  AAGTTTTCCAGGCTACACAAATTTAGTAAACCGGGTATAAAGATCATGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCCAGGCTACACAAATTTAGTAAACCGGGTATAAAGATCATGAT  818

seq1  AAACTGTTCATTCTCTGTATTTCCTTCACCCATATGAAGTGTTTAGGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTCATTCTCTGTATTTCCTTCACCCATATGAAGTGTTTAGGATT  868

seq1  CCAGTTATCTCATTTAATTGCTTCTTCATCTCTCTGTCTTTAGCTTTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATCTCATTTAATTGCTTCTTCATCTCTCTGTCTTTAGCTTTACT  918

seq1  ATGTTTAAAGCACCTTTTTACTCTGCTGGGTAGACCTTTCTGCTCAACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAAGCACCTTTTTACTCTGCTGGGTAGACCTTTCTGCTCAACAT  968

seq1  TCTTCAAAACAGGACTGGCAAGTGTCCTAGGAAGATTCTCAGGGCTAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAACAGGACTGGCAAGTGTCCTAGGAAGATTCTCAGGGCTAGTA  1018

seq1  TCACTCACAACTGTAGAAATTTGAACATTTCAAAGAGGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACAACTGTAGAAATTTGAACATTTCAAAGAGGAATTC  1061