BAC Information

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BAC

Clone NameB6Ng01-049H23
Chromosome4 (Build37)10 (Build37)
Map Location 88,654,695 - 88,655,817104,053,515 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
Downstream geneLOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049H23.bB6Ng01-049H23.g
ACCDH873741DH873742
length1,104986
definitionDH873741|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H23, 5' end.DH873742|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,654,695 - 88,655,817)(104,053,515 - 104,054,363)
sequence
gaattcactaactgacaattttaaagctcgtggactttccaagtaccctc
atggctaaatacaacctactttaaaaacattagcttgatagctattataa
agcagatgacattactcatgtcaaaaaataaaacacctccatctcataga
agtctgtccccctgtacctcttcatgcccctaacttcctctttcctcact
gaaggactatgatattttctggtattctagtccatgcttttctttactca
tctaagtataatcccccaaataaaataatttggctgtatttatgagtaag
taaaatcatacagtctacattatcttgtgccagcttctttcactcagcct
gtgtttggctgatttgtccatgtccttgtgaatgcctgcagtttgatttc
cttgtacaaagtggttcatgtgggtgactttgatctataaatccaagtga
agtctgcaaggctgtgctatgacaaagtatatccagcaaattggttgcat
acttgcttatgtttaagagtttagagttcagcctaatggtgatgagtttg
ggaatctggtcctgaccattgactcctccacttactgtgcgttctctggt
ttccagttgattcccctgcagccttggtttacttatggagtggggagttt
attaatacttctcaatatcatgtagcaactcttaagagatacacatggga
gtcatttggttactaccaggctcctggttcatatagcacatgcttctatg
ggcttctaatagctttttatttgtgatttttttatgtgtaattaattcag
attcctcccccttgattcagagagcacaacgcaaaagtgggggaaacatg
ctatcaatgagaagtgtgagtgatactgaattttctatcatcaaacagtc
tgtttggtcttttgtgcattttagatagaatggaaacccttgaaagtgag
ctggctttaagtgtttttatttttatttatagcagtggtttattacataa
atcagattggttttttttagtgttcctctaaacaagaacttctactggca
gaatattctactaaaagtcttgttaattattttcaaagccatattatata
ttcc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgggat
ttcatctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattccaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaactggtaatgaggatgcatgctccactat
gttcatagcagatttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacgatatgtactcactgataagtggatattagcccaaaact
taggatacccaagatataagatacaatttgctaaacgcatgaaaattttg
ctactgttatgaattgtaatgtaaatttctgatctgtgacccctgtgggt
gttatgacccacaggttgagaaacactggattagagggatgctttgccat
gtctctgagtcacatccaggggtggatttgtcactccacacggttcccta
acatagccatgctcactttaacacacatcgggactttgtctgccccttat
acattcactcagagtttctctgctccatacactcctttcctctctgagtc
tgatgtctagtctactctattttctgttactaccctcatactcacagtga
taattgttgcagtaacagggttatctagctcacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88654695_88655817
seq2: B6Ng01-049H23.b_48_1151

seq1  GAATTCACTAACTGACAATTTTAAAGCTCGTGGACTTTCCAAGTACCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAACTGACAATTTTAAAGCTCGTGGACTTTCCAAGTACCCTC  50

seq1  ATGGCTAAATACAACCTACTTTAAAAACATTAGCTTGATAGCTATTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAATACAACCTACTTTAAAAACATTAGCTTGATAGCTATTATAA  100

seq1  AGCAGATGACATTACTCATGTCAAAAAATAAAACACCTCCATCTCATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGACATTACTCATGTCAAAAAATAAAACACCTCCATCTCATAGA  150

seq1  AGTCTGTCCCCCTGTACCTCTTCATGCCCCTAACTTCCTCTTTCCTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCCCCCTGTACCTCTTCATGCCCCTAACTTCCTCTTTCCTCACT  200

seq1  GAAGGACTATGATATTTTCTGGTATTCTAGTCCATGCTTTTCTTTACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACTATGATATTTTCTGGTATTCTAGTCCATGCTTTTCTTTACTCA  250

seq1  TCTAAGTATAATCCCCCAAATAAAATAATTTGGCTGTATTTATGAGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTATAATCCCCCAAATAAAATAATTTGGCTGTATTTATGAGTAAG  300

seq1  TAAAATCATACAGTCTACATTATCTTGTGCCAGCTTCTTTCACTCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCATACAGTCTACATTATCTTGTGCCAGCTTCTTTCACTCAGCCT  350

seq1  GTGTTTGGCTGATTTGTCCATGTCCTTGTGAATGCCTGCAGTTTGATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGCTGATTTGTCCATGTCCTTGTGAATGCCTGCAGTTTGATTTC  400

seq1  CTTGTACAAAGTGGTTCATGTGGGTGACTTTGATCTATAAATCCAAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACAAAGTGGTTCATGTGGGTGACTTTGATCTATAAATCCAAGTGA  450

seq1  AGTCTGCAAGGCTGTGCTATGACAAAGTATATCCAGCAAATTGGTTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCAAGGCTGTGCTATGACAAAGTATATCCAGCAAATTGGTTGCAT  500

seq1  ACTTGCTTATGTTTAAGAGTTTAGAGTTCAGCCTAATGGTGATGAGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTATGTTTAAGAGTTTAGAGTTCAGCCTAATGGTGATGAGTTTG  550

seq1  GGAATCTGGTCCTGACCATTGACTCCTCCACTTACTGTGCGTTCTCTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGGTCCTGACCATTGACTCCTCCACTTACTGTGCGTTCTCTGGT  600

seq1  TTCCAGTTGATTCCCCTGCAGCCTTGGTTTACTTATGGAGTGGGGAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTGATTCCCCTGCAGCCTTGGTTTACTTATGGAGTGGGGAGTTT  650

seq1  ATTAATACTTCTCAATATCATGTAGCAACTCTTAAGAGATACACATGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATACTTCTCAATATCATGTAGCAACTCTTAAGAGATACACATGGGA  700

seq1  GTCATTTGGTTACTACCAGGCTCCTGGTTCATATAGCACATGCTTCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGGTTACTACCAGGCTCCTGGTTCATATAGCACATGCTTCTATG  750

seq1  GGCTTCTAATAGCTTTTTATTTGTGATTTTTTTATGTGTAATTAATTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTAATAGCTTTTTATTTGTGATTTTTTTATGTGTAATTAATTCAG  800

seq1  ATTCCTCCCCCTTGATTCAGAGAGCACAACGCAAAAGTGGGGGAAACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTCCTCCCCCTTGATTCAGAGAGCACAACGCAAAAGTGGGGGAAAC-AT  849

seq1  GCTATCAATGAGAAGTGTGAGTGATACTGAATTTTCTATCATCAAACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAATGAGAAGTGTGAGTGATACTGAATTTTCTATCATCAAACAGT  899

seq1  CTGTTTGGTCCTTTTGTGCATTTTTAGATAGAATGGAAACCCTTGAAAGT  950
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  CTGTTTGGT-CTTTTGTGCA-TTTTAGATAGAATGGAAACCCTTGAAAGT  947

seq1  GAGCTGGCTTTAAGTGTTTTTATTTTTATTTTAATAAGCAGTGGTTTATT  1000
      |||||||||||||||||||||||||||||||  || ||||||||||||||
seq2  GAGCTGGCTTTAAGTGTTTTTATTTTTATTT--AT-AGCAGTGGTTTATT  994

seq1  ACATAAATCAAATTGGTTTTTTTTTAGTTGTTTCCTCTAAACGAAGAAAC  1050
      |||||||||| ||||| |||||||||||   ||||||||||| ||| |||
seq2  ACATAAATCAGATTGG-TTTTTTTTAGT--GTTCCTCTAAAC-AAG-AAC  1039

seq1  TTCCTACTGGCAGAATTATTCTTAACTAAAAGTTCTTGTTAATTTATTTT  1100
      || |||||||||||| ||||||  |||||||| ||||||||| |||||||
seq2  TT-CTACTGGCAGAA-TATTCT--ACTAAAAG-TCTTGTTAA-TTATTTT  1083

seq1  CAAAAGCAATATATATATATTCC  1123
      | ||||| |||| ||||||||||
seq2  C-AAAGCCATAT-TATATATTCC  1104

seq1: chr10_104053515_104054363
seq2: B6Ng01-049H23.g_67_702 (reverse)

seq1  GTTTAGCAAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTAGCAAATTGTATCTTATATCTTGGGTATCCTAAGTTT-TGGGCTAA  49

seq1  TATCCACTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGT  100
      ||||||||||||||||||||||||| | | ||||||||||||||||| ||
seq2  TATCCACTTATCAGTGAGTACATATCGTGTGAGTTCCTTTGTGATTGTGT  99

seq1  TACCGCACTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATT  150
      |||| ||||||||||||| | |||||||||||||||||||||||||||||
seq2  TACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATT  149

seq1  TCATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAAT  200
      |||||||||||||||||||||||||                         
seq2  TCATAAATTCATTCTTTTTAATAGC-------------------------  174

seq1  GTAATTACAATTAATTAATTTATTAATTAAATAATTTAATAATTTAATTG  250
                                                        
seq2  --------------------------------------------------  174

seq1  ATAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAATAATAATTT  300
                                                        
seq2  --------------------------------------------------  174

seq1  AATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAATAA  350
                                             | ||||     
seq2  ---------------------------------------TGAGTA-----  180

seq1  TTTAATTAATGTAATTTAATTAATGTAATTACATTACATTTAATAGCTCC  400
                              |||                   ||||
seq2  ------------------------GTA-------------------CTCC  187

seq1  ATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGCA  450
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCA  237

seq1  TCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATA  500
      |||||||||||||||||| |||||||||||||||||  |||||||||| |
seq2  TCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAATCTGCTATGAACA  287

seq1  TAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATG  550
      ||||||||||||  ||||  ||||| |||||| |||||||||||||||||
seq2  TAGTGGAGCATGCATCCTCATTACCAGTTGGGACATCTTCTGGATATATG  337

seq1  CCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCT  600
      ||||| ||||||||||| ||||||||| ||||||||||||||||||||||
seq2  CCCAGGAGAGGTATTGCGGGATCCTCCAGTAGTACTATGTCCAATTTTCT  387

seq1  GACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCC  650
      || |||||||||||| |||||||||||||||||||||||| || ||||||
seq2  GAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGGAATCCC  437

seq1  ACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTG  487

seq1  CTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAA  750
      ||||||||||||||||||||||||| |||||||||||||||||| || ||
seq2  CTGTCACCTGAATTTTTGATCTTAGACATTCTGACTGGTGTGAGATGAAA  537

seq1  TCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAAC  800
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAAC  587

seq1  ATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  849
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  636