BAC Information

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BAC

Clone NameB6Ng01-049K03
Chromosome10 (Build37)
Map Location 126,353,877 - 126,505,465
singlet/doubletdoublet
Overlap geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31
Upstream geneLrig3, LOC100043547, LOC668336, Xrcc6bp1, LOC622567
Downstream geneCentg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049K03.bB6Ng01-049K03.g
ACCDH873839DH873840
length724426
definitionDH873839|Mus musculus domesticus DNA, BAC clone: B6Ng01-049K03, 5' end.DH873840|Mus musculus domesticus DNA, BAC clone: B6Ng01-049K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,504,736 - 126,505,465)(126,353,877 - 126,354,308)
sequence
gaattctctatatatgtctgttaccaggcgtgcaaaactaagagctctac
atgccagatgtgtggggagaggttccttaaacattcagacaaagccctca
agatcctaggaggtgttgggctcttctttagtttcacagaggtaatgact
cctcatgtacacactcaagccttcaaccccatggtccagaaataaccttt
ctctcttcctctcccgtagatccttggtgtttggctagcaatgagattcc
ggaatcaaaaggaccctcgagccaaccccagtgccttcctatgagacttt
tgacctcccagatagcatctctgcagcctaggctgtttctagctagctct
gtatccaaggaagaccttgaattccagaccctcctgcctcagcctcctgc
tggcatcatcacactcagccagcccctggatccttctgacttggctttgc
cattttttttgttttttgagacagggtttctctgtatggccctggctgtc
ctggaactgtgtaaactaggctggcctcaaactcagaaatccacctgcct
ctgcctcccaagtgctgggattaaaggcgtacaccaccactgcctggcct
ggccatctttaacaacactaggggtggccttatggttttgtttagaagaa
agaggttccttaccttcacccccaagactgtggttgaactatgtctgttt
gatgggaacacgatatgatgaggg
agaagattaaaaagaaaagaaagagagagggagagaaagaaagaaagaga
aacaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaag
aaaggaagaaagaaagaaagaagactgtgtagagggtctggagaggccta
gaggatgtaggttcaattcccagcacccacatgataactcacaaccattc
ataacatttctctagttccagaaacctgacagcttcctttggcttctgca
agcaacaggcacacatgtgatacacagacattcatgcagacaaaacaccc
ataactgtgtctataaaataaatcttttttaagacttaattgaaagtctc
aaaaggtggggtgagggtggggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126504736_126505465
seq2: B6Ng01-049K03.b_44_767 (reverse)

seq1  CCCTCATCCATAATCGTGTTCCCATCAAAACAGACATAAGTCCAACCACC  50
      ||||||| ||| |||||||||||||| |||||||||| ||| |||||| |
seq2  CCCTCAT-CAT-ATCGTGTTCCCATC-AAACAGACAT-AGTTCAACCA-C  45

seq1  AGTTCTTGGGGGTG-AGGTAAGGGACCTCTTTTCTCTAAAACAAAACCAT  99
      || ||||||||||| |||||||| ||||||||  ||| ||||||||||||
seq2  AG-TCTTGGGGGTGAAGGTAAGGAACCTCTTTCTTCT-AAACAAAACCAT  93

seq1  AGGGCCACCCCTAGGTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGT  149
      | ||||||||||| |||||  |||||||||| ||||||||||||||||||
seq2  AAGGCCACCCCTA-GTGTTGTTAAAGATGGCCAGGCCAGGCAGTGGTGGT  142

seq1  GTACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGA  192

seq1  GTTTGAGGCCAGCCTAGTTTACACAGTTCCAGGACAGCCAGGGCCATACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGCCAGCCTAGTTTACACAGTTCCAGGACAGCCAGGGCCATACA  242

seq1  GAGAAACCCTGTCTCAAAAAAC-AAAAAAATGGCAAAGCCAAGTCAGAAG  298
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCAAAAAACAAAAAAAATGGCAAAGCCAAGTCAGAAG  292

seq1  GATCCAGGGGCTGGCTGAGTGTGGTGATGCCAGCAGGAGGCTGAGGCAGG  348
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATCCAGGGGCTGGCTGAGTGTGATGATGCCAGCAGGAGGCTGAGGCAGG  342

seq1  AGGGTCTGGAATTCAAGGTCTTCCTTGGATACAGAGCTAGCTAGAAACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGGAATTCAAGGTCTTCCTTGGATACAGAGCTAGCTAGAAACAG  392

seq1  CCTAGGCTGCAGAGATGCTATCTGGGAGGTCAAAAGTCTCATAGGAAGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTGCAGAGATGCTATCTGGGAGGTCAAAAGTCTCATAGGAAGGC  442

seq1  ACTGGGGTTGGCTCGAGGGTCCTTTTGATTCCGGAATCTCATTGCTAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGTTGGCTCGAGGGTCCTTTTGATTCCGGAATCTCATTGCTAGCC  492

seq1  AAACACCAAGGATCTACGGGAGAGGAAGAGAGAAAGGTTATTTCTGGACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAAGGATCTACGGGAGAGGAAGAGAGAAAGGTTATTTCTGGACC  542

seq1  ATGGGGTTGAAGGCTTGAGTGTGTACATGAGGAGTCATTACCTCTGTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTGAAGGCTTGAGTGTGTACATGAGGAGTCATTACCTCTGTGAA  592

seq1  ACTAAAGAAGAGCCCAACACCTCCTAGGATCTTGAGGGCTTTGTCTGAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAAGAGCCCAACACCTCCTAGGATCTTGAGGGCTTTGTCTGAAT  642

seq1  GTTTAAGGAACCTCTCCCCACACATCTGGCATGTAGAGCTCTTAGTTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGGAACCTCTCCCCACACATCTGGCATGTAGAGCTCTTAGTTTTG  692

seq1  CACACCTGGTAACAGACATATATAGAGAATTC  730
      ||| ||||||||||||||||||||||||||||
seq2  CACGCCTGGTAACAGACATATATAGAGAATTC  724

seq1: chr10_126353877_126354308
seq2: B6Ng01-049K03.g_68_499

seq1  GAATTCAGAAGATTAAAAAGAAAAGAAAGAGAGAGGGAGAGAAAGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGATTAAAAAGAAAAGAAAGAGAGAGGGAGAGAAAGAAAGA  50

seq1  AAGAGAAACAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAACAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  100

seq1  AAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  150

seq1  AGAAAGAAAGGAAGAAAGAAAGAAAGAAGACTGTGTAGAGGGTCTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGGAAGAAAGAAAGAAAGAAGACTGTGTAGAGGGTCTGGAGA  200

seq1  GGCCTAGAGGATGTAGGTTCAATTCCCAGCACCCACATGATAACTCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGAGGATGTAGGTTCAATTCCCAGCACCCACATGATAACTCACAA  250

seq1  CCATTCATAACATTTCTCTAGTTCCAGAAACCTGACAGCTTCCTTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATAACATTTCTCTAGTTCCAGAAACCTGACAGCTTCCTTTGGCT  300

seq1  TCTGCAAGCAACAGGCACACATGTGATACACAGACATTCATGCAGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGCAACAGGCACACATGTGATACACAGACATTCATGCAGACAAA  350

seq1  ACACCCATAACTGTGTCTATAAAATAAATCTTTTTTAAGACTTAATTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATAACTGTGTCTATAAAATAAATCTTTTTTAAGACTTAATTGAA  400

seq1  AGTCTCAAAAGGTGGGGTGAGGGTGGGGTTGG  432
      ||||||||||||||||||||||||||||||||
seq2  AGTCTCAAAAGGTGGGGTGAGGGTGGGGTTGG  432