BAC Information

Click to search

BAC

Clone NameB6Ng01-050E21
Chromosome10 (Build37)
Map Location 94,137,285 - 94,315,631
singlet/doubletdoublet
Overlap geneEG667315, 4921537D05Rik, Plxnc1
Upstream geneNtn4, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3
Downstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050E21.bB6Ng01-050E21.g
ACCDH874292DH874293
length1,060130
definitionDH874292|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E21, 5' end.DH874293|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,137,285 - 94,138,372)(94,315,502 - 94,315,631)
sequence
gaattctgggtatggacttgttgttatgcctttcagtgccttggcctata
ttatcatgacttagttccttaaagaatgcctgaaccacaggtatgggatc
caattcaacagcatgcaaacgggacctacttcacagtaaaaagataacat
gtgaattcatgaccagggaatcaacagggtcattcagtttgacagatcga
tcaccaggcaacctactgagggtgttagagatgtctcctcccacatgtcc
tccaatctcaagtaaagagattcacattaggggacaggtagggcaaacaa
gttcttgaggtttactgtagcaggtgggaaggcaaaggcaagatgggagg
gtactgtgagccaagtggcaatggccaaggaatgcctctagcgtctggac
tttgcccaccagttctcctttgtctatccctggggcagtctggagaggtc
gccctcctaaaaaaggtgcaggctttctcagaagccattacccacaattc
agtctgttacaattagatgcatggttatccatgagggttaactacctgta
aattttagatgtttactaagggaaagggcaacaataccttgcacatgttg
ctgcaggagagggtggggctcctgggccctgctgaaacagcccagagttc
tgcctcttctcttacctgctcagcttggctatttcatagccaagtgcaag
ccttcttatttaccttcctcagtgtttctgacctagctgtttaatgtttg
ctttcaatgtaataatggtataactgaagtgccagttcagaagcaggttt
cataaggattaaatgccatccttcagaagtagtacatacactggcttgga
tatatcctactaagacaacacatggttcagacaaacagagaaagcagaat
gacctcactgaacacagtctactgacttgtagggaacactttcagtccca
tactcttgtacactgagtataaagtctggcttccaaatgggatgcattct
gccagaaacacaataagagtccactaaactatgtagagcatttgatttga
actctggatc
attgatttcattaaatgctgtctgcttgtgtttgcaaaatgtaatttcct
agtgagttcttcgaaccgcaacacatcaacagatttcgtgaaagtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_94137285_94138372
seq2: B6Ng01-050E21.b_43_1102

seq1  GAATTCTGGGTATGGACTTGTTGTTATGCCTTTCAGTGCCTTGGCCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTATGGACTTGTTGTTATGCCTTTCAGTGCCTTGGCCTATA  50

seq1  TTATCATGACTTAGTTCCTTAAAGAATGCCTGAACCACAGGTATGGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGACTTAGTTCCTTAAAGAATGCCTGAACCACAGGTATGGGATC  100

seq1  CAATTCAACAGCATGCAAACGGGACCTACTTCACAGTAAAAAGATAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAACAGCATGCAAACGGGACCTACTTCACAGTAAAAAGATAACAT  150

seq1  GTGAATTCATGACCAGGGAATCAACAGGGTCATTCAGTTTGACAGATCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCATGACCAGGGAATCAACAGGGTCATTCAGTTTGACAGATCGA  200

seq1  TCACCAGGCAACCTACTGAGGGTGTTAGAGATGTCTCCTCCCACATGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGCAACCTACTGAGGGTGTTAGAGATGTCTCCTCCCACATGTCC  250

seq1  TCCAATCTCAAGTAAAGAGATTCACATTAGGGGACAGGTAGGGCAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTCAAGTAAAGAGATTCACATTAGGGGACAGGTAGGGCAAACAA  300

seq1  GTTCTTGAGGTTTACTGTAGCAGGTGGGAAGGCAAAGGCAAGATGGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGAGGTTTACTGTAGCAGGTGGGAAGGCAAAGGCAAGATGGGAGG  350

seq1  GTACTGTGAGCCAAGTGGCAATGGCCAAGGAATGCCTCTAGCGTCTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTGAGCCAAGTGGCAATGGCCAAGGAATGCCTCTAGCGTCTGGAC  400

seq1  TTTGCCCACCAGTTCTCCTTTGTCTATCCCTGGGGCAGTCTGGAGAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCACCAGTTCTCCTTTGTCTATCCCTGGGGCAGTCTGGAGAGGTC  450

seq1  GCCCTCCTAAAAAAGGTGCAGGCTTTCTCAGAAGCCATTACCCACAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCTAAAAAAGGTGCAGGCTTTCTCAGAAGCCATTACCCACAATTC  500

seq1  AGTCTGTTACAATTAGATGCATGGTTATCCATGAGGGTTAACTACCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTACAATTAGATGCATGGTTATCCATGAGGGTTAACTACCTGTA  550

seq1  AATTTTAGATGTTTACTAAGGGAAAGGGCAACAATACCTTGCACATGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGATGTTTACTAAGGGAAAGGGCAACAATACCTTGCACATGTTG  600

seq1  CTGCAGGAGAGGGTGGGGCTCCTGGGCCCTGCTGAAACAGCCCAGAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGAGAGGGTGGGGCTCCTGGGCCCTGCTGAAACAGCCCAGAGTTC  650

seq1  TGCCTCTTCTCTTACCTGCTCAGCTTGGCTATTTCATAGCCAAGTGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTCTCTTACCTGCTCAGCTTGGCTATTTCATAGCCAAGTGCAAG  700

seq1  CCTTCTTATTTACCTTCCTCAGTGTTTCTGACCTAGCTGTTTAATGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTATTTACCTTCCTCAGTGTTTCTGACCTAGCTGTTTAATGTTTG  750

seq1  CTTTCAATGTAATAATGGTATAACTGAAGTGCCAGTTCAGAAGCAGGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTCAATGTAATAATGGTATAACTGAAGTGCCAGTTCAGAAGCA-GGTT  799

seq1  TCATAAGGATTAAATGCCATCCTTCAGGAAGTAGTACATACACTGGCTTG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCATAAGGATTAAATGCCATCCTTCA-GAAGTAGTACATACACTGGCTTG  848

seq1  GATTATTATCCCTACTAAGAACAAACACATGGTTCCAAGAACAAAACAGA  900
      |||   ||| ||||||||||   ||||||||||||  |||   |||||||
seq2  GAT--ATAT-CCTACTAAGA--CAACACATGGTTC--AGA--CAAACAGA  889

seq1  GAAAGCAGAAATGACCCCACTGAACACCAGTCCTACTGACTTGTTAGGGA  950
      |||||||| ||||||| ||||||||| |||| ||||||||||| ||||||
seq2  GAAAGCAG-AATGACCTCACTGAACA-CAGT-CTACTGACTTG-TAGGGA  935

seq1  ACACTTTCCAGTCCCCATAACTC-TGTACACTGAAGGTATAAAAGTCCTG  999
      ||||||| |||| ||||| |||| ||||||||||  |||| ||||| |||
seq2  ACACTTT-CAGT-CCCAT-ACTCTTGTACACTGA--GTAT-AAAGT-CTG  978

seq1  GCTTCCAAATGGGATGCATTTCTGCCAGGAGACACAATAAGAGTCCCACT  1049
      |||||||||||||||||| |||||||| || ||||||||||||| |||||
seq2  GCTTCCAAATGGGATGCA-TTCTGCCA-GAAACACAATAAGAGT-CCACT  1025

seq1  AGACTATGTTAGAGCCATTTTGATTTTGAACTCTGGATC  1088
      | |||||| ||||||   ||||| |||||||||||||||
seq2  AAACTATG-TAGAGC--ATTTGA-TTTGAACTCTGGATC  1060

seq1: chr10_94315502_94315631
seq2: B6Ng01-050E21.g_72_201 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACTTTCACGAAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACTTTCACGAAATCT  50

seq1  GTTGATGTGTTGCGGTTCGAAGAACTCACTAGGAAATTACATTTTGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTGTTGCGGTTCGAAGAACTCACTAGGAAATTACATTTTGCAAA  100

seq1  CACAAGCAGACAGCATTTAATGAAATCAAT  130
      ||||||||||||||||||||||||||||||
seq2  CACAAGCAGACAGCATTTAATGAAATCAAT  130