BAC Information

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BAC

Clone NameB6Ng01-050H07
Chromosome10 (Build37)
Map Location 18,732,284 - 18,733,158
singlet/doubletsinglet
Overlap geneTnfaip3
Upstream gene3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp
Downstream geneTpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050H07.bB6Ng01-050H07.g
ACCDH874394DH874395
length1,270873
definitionDH874394|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H07, 5' end.DH874395|Mus musculus domesticus DNA, BAC clone: B6Ng01-050H07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccactgctaccttatcaactatgtttttatattttaaatgcttgg
ttatttcgacaatgtccacagagtcttcaccagaaacaggttctgtctca
agaatctacttcttttgctcacaataaaatgcaagttgtcttctcatggc
taaaagagtgtagcaactcactccaagtgccaagtctaattcaaggcctt
ttgctgcctttaccacatctgcagctgatgtcttgaacctttcaaattca
tagagaaggatcgtaattagtgttttccaagtctgtcaattatggcccct
ctctgagtatcaccaataattttaatgacatagaatcttgaatcttttcc
aggtgtttttccaattcctctgcccagtttgatctgaaagtcactatcta
cagcagagatatctatatgaaatgcatttcttaaaaaaaaaaaaaaaggt
atggtgtcagggagatggctcagcaaacaaaggagttagccactgaggct
gacaacctgagttagagtcacagaacccatgtggtgaaagagtagaatcc
caccctgcaagttggcctctgatctctgcatgtgcacataagtaaataag
tgggaaataagactaaaggctacaataacttcttgacttaggatgtatat
tatgtccctgttggtaggtatgaaaataatgctgatttaatttgtgaatt
acatctgagccagtgtccaggtacattgtcagtaatcactaatgtcttga
aaggagtgttcttcagggttgtgtgtttcagcagtggacacacacattca
ttaaaccgtgtttagaatattcactatcacaggtatgtgctgttactata
gcttggttgtttaacttacagagcacagcaggggagttttagtagaattc
tttagggccctctgattctcagatgatgataaatactttggcttcacttg
aagtcgccagctgattctgcccctcagcagaatcagtctattcgtcatgt
gtgacacttgacacttgacccttgctctgtctggtagaaaatctgttgtc
tagtagagacgctcctttatgattcagctctgtcttccgagaatctactg
agctctccatcgcactttctagtttagagagaacattctggtctagccta
gaacaactggaatttaagttcctattctctcacgcctctgattgaatgga
aatggcagtctagtgacctccctcacggaagtctgccgtcgctgtatcat
aaactacttttgacagcatg
gaattcatttatttatggatggatggatggatggatggatggatggagta
gtgacattgtgagagagaccactgctacatgaccaaggaaattcatgtgt
ggtagttttgtctcattctatgttccttcctaattctagttgcaaggaaa
aaactgtcatcagacacagagaataactccccagtctcagcattccaatg
aaaattcccaatagcagcttctccctttcaagcagggaacaagagaattt
atactactgtgtcaggcttaagagaacccaggcccactgaagagtgactt
ctctaatctctagatttcttctccctcttgcatagtagtaacaccatttt
tacctggtgagttcgccttggaggatagcaaggtgcccgactggtattaa
gttttactgaaaaccttcctaggtgctctaaatcattgctgtcttctagg
aaattaggatgtatagccaagtgctctgtgaagggtccatggaacagcga
agcagaactgtctcagcattgacccacagggaaagatgtccatatgcatc
atcagtccacattcttgcataactggcttgggtggccatatggccactct
tttgtcctgagtggtaccccactcaaatgcttccctatttgcttcctaat
tttcatgtcttccacctttgattgtgtttgttcttttacggtaaaggaag
tgggaggggtgttctctgaacattgggacctggaaggacagcattaagtg
ttggtctactgagttgaaattacaaggctctctgatgtctgttttttttt
tttttttttccgagagtgtgatataccttattacagtctgtccttttgtc
tcaggtaagaagttcatggcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18732284_18733158
seq2: B6Ng01-050H07.g_66_938 (reverse)

seq1  CTTGCCACTGAACTTCATAACATGAGACAAATGAACAGACTGATAATAAG  50
      ||||||| |||||||| | || ||||||||| | |||||||| |||||||
seq2  CTTGCCA-TGAACTTC-TTACCTGAGACAAAAGGACAGACTG-TAATAAG  47

seq1  GTATATCACACCTCTCAGGAAAAAAAAAAAAAAAAAACAGACATCAGAGA  100
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  GTATATCACA-CTCTC-GGAAAAAAAAAAAAAAAAAACAGACATCAGAGA  95

seq1  GCCTTGTGATTTCAACTCAAGTAGACCAACACTTATTGCTGTCCTTCCAG  150
      ||||||| |||||||||| |||||||||||||||| ||||||||||||||
seq2  GCCTTGTAATTTCAACTC-AGTAGACCAACACTTAATGCTGTCCTTCCAG  144

seq1  GTCCCAATGCTCAGAG-ACACCCCTCCCACTTCCTTTACCCTAAAAGAAC  199
      ||||||||| |||||| ||||||||||||||||||||||| |||||||||
seq2  GTCCCAATGTTCAGAGAACACCCCTCCCACTTCCTTTACCGTAAAAGAAC  194

seq1  AAACACAATCAAAGGTGGAAGACATG-AAATTAGGAAGCAAATA-GGAAG  247
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  AAACACAATCAAAGGTGGAAGACATGAAAATTAGGAAGCAAATAGGGAAG  244

seq1  CATTTGAGTGGGGTACCACTCAGGAC-AAAGAGTGGCCATATGGCCACCC  296
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATTTGAGTGGGGTACCACTCAGGACAAAAGAGTGGCCATATGGCCACCC  294

seq1  AAGCCAGTTATGCAAGAATGTGGACTGATGATGCATATGGACATCTTTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTTATGCAAGAATGTGGACTGATGATGCATATGGACATCTTTCC  344

seq1  CTGTGGGTCAATGCTGAGACAGTTCTGCTTCGCTGTTCCATGGACCCTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTCAATGCTGAGACAGTTCTGCTTCGCTGTTCCATGGACCCTTC  394

seq1  ACAGAGCACTTGGCTATACATCCTAATTTCCTAGAAGACAGCAATGATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCACTTGGCTATACATCCTAATTTCCTAGAAGACAGCAATGATTT  444

seq1  AGAGCACCTAGGAAGGTTTTCAGTAAAACTTAATACCAGTCGGGCACCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCTAGGAAGGTTTTCAGTAAAACTTAATACCAGTCGGGCACCTT  494

seq1  GCTATCCTCCAAGGCGAACTCACCAGGTAAAAATGGTGTTACTACTATGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTCCAAGGCGAACTCACCAGGTAAAAATGGTGTTACTACTATGC  544

seq1  AAGAGGGAGAAGAAATCTAGAGATTAGAGAAGTCACTCTTCAGTGGGCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGAAGAAATCTAGAGATTAGAGAAGTCACTCTTCAGTGGGCCT  594

seq1  GGGTTCTCTTAAGCCTGACACAGTAGTATAAATTCTCTTGTTCCCTGCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTCTTAAGCCTGACACAGTAGTATAAATTCTCTTGTTCCCTGCTT  644

seq1  GAAAGGGAGAAGCTGCTATTGGGAATTTTCATTGGAATGCTGAGACTGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAGAAGCTGCTATTGGGAATTTTCATTGGAATGCTGAGACTGGG  694

seq1  GAGTTATTCTCTGTGTCTGATGACAGTTTTTTCCTTGCAACTAGAATTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTCTCTGTGTCTGATGACAGTTTTTTCCTTGCAACTAGAATTAG  744

seq1  GAAGGAACATAGAATGAGACAAAACTACCACACATGAATTTCCTTGGTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACATAGAATGAGACAAAACTACCACACATGAATTTCCTTGGTCA  794

seq1  TGTAGCAGTGGTCTCTCTCACAATGTCACTACTCCATCCATCCATCCATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGTGGTCTCTCTCACAATGTCACTACTCCATCCATCCATCCATC  844

seq1  CATCCATCCATCCATAAATAAATGAATTC  875
      |||||||||||||||||||||||||||||
seq2  CATCCATCCATCCATAAATAAATGAATTC  873