BAC Information

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BAC

Clone NameB6Ng01-051M16
Chromosome10 (Build37)
Map Location 5,191,831 - 5,307,058
singlet/doubletdoublet
Overlap geneSyne1
Upstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1
Downstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051M16.bB6Ng01-051M16.g
ACCDH875329DH875330
length1,1121,029
definitionDH875329|Mus musculus domesticus DNA, BAC clone: B6Ng01-051M16, 5' end.DH875330|Mus musculus domesticus DNA, BAC clone: B6Ng01-051M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,305,930 - 5,307,058)(5,191,831 - 5,192,866)
sequence
gaattcagtaactttcactgatgggagacagtcatgtgatttcacagcgt
ctcccccgactcacactagagtcatcttgggaacgatttctctccagctc
tacagagatgagtgaggctctgttcagacctgcattccttttatgaagaa
atcaaataggttctacaggtcgcaggtcctttactgaacctatctggcca
ttccttaaaatactaattaactaagctgttaagtgatagtttacaggata
gattgatggatcacatggtcttcttttttgacattttaaaaccaaattca
taaacagtgtggggttgagatggtcagagaaaaggagaatattctattca
ttcctgttagacattatctgattataaaatgtcgccaacagtctcaggtg
tcaaatgcttgatctccagttggggaagttctagaaatttctgagctggt
tcttaaccagtagaaataaaggagaaagctgtctccttccaaggctgttt
atggttccccatatgtttatttcttcttgccttgtttccaagtgctatga
gttgaacatcgtccttctccacataggcctgccactgtgatgttctgtgc
atgtgcacgaggccaagctaagcaaccaccaacgaaaccctcagaatcca
acagtcttttcttgccttttatagggttgattacattaggtgtttctgtc
atgttgctcagaagattaacccagatactttctggctgttgccctgaaga
agtgaaaaactagagacaagtttatgaatggactgttcagggagatggca
ctgccagtgattgattcaccacacaaatgtatctgagcttgagacctata
acacatataaaacaaacaaaccaaggcatggtggagtatgcttacaataa
tccttatgatggacaggcagagatccctgaagctcactggttaaccacat
acccaatgtagacattctagccatgagagaccctgcttcaaagaaagaga
accacaacaaaaacttctacacaatgatgattacagaagtagatgtctct
gtctcacagctaggtgcaatatttgtacttctgcactacataaacatgtc
tacaccatgtac
gaattcccatttctctggacaaggcttccaataacctactttgtgtgtac
ctccaacttggaaaactatgcatggctcacctactcttaagtaagccacc
cctgtttgcccacagctttacagtagtccgaacagactcctgtcaggagt
acttccattcagaggggaagcacagactcaggataagacttcagtgacgt
ccttgctggatgggctgagccaggccttcggggaggcgtcatcacaggta
tgcctgggccatcattgtacttgtcttggtcttgtctttctgggacttgt
tcatctgaactttgcaaagttgtttcatctttgcccatgactgttgaggc
ctagcactagtgatgagtcctggagcttacaggtgctaattcctgaatat
ccgtttgctccattatttctctatagttcttcaaaatactgaaatgtatt
aatattattattattatgatgatgatgatgacgactaaaagatgagttgg
gagtggagaggtggaggcagggtctcttgtagccaaagctgccctcagat
tcacttctcagctgtggatgagcttaactgcctcatcttcctgtcttcag
ttcccgagagctggggttccaggtctgtggcattacacctggatggagac
tgattgtcttctgcgtgttgcgtgtctctctgtgttccccagagtggagg
gacagacagacagagcattcacttggagcagaagctatatgacggagtct
cagccacttccacctggttgaatgacgtcgaggagcgcttattttgtagc
cacggcacctttgccagaagaaacagaagcttgtctctcaaccaggaggt
aaggtggcaatttctgtccatgtcttgaaatctcaaagcaattacattag
taacgagtaatttatatttacaatatggataccaagacaagacagctcta
taaattgctatggtgtgtttccagaaaaatagtgtgggacagacttttta
aacataaagctctcaaagaaatgtatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5305930_5307058
seq2: B6Ng01-051M16.b_48_1159 (reverse)

seq1  GTACATGTGTGTAGACATGTTTATGTAGGTGCAGAAGTACATATA-TGCA  49
      ||||||| ||||||||||||||||||| ||||||||||||| ||| ||||
seq2  GTACATG-GTGTAGACATGTTTATGTA-GTGCAGAAGTACAAATATTGCA  48

seq1  CCTATGCTTGTGAAGACCAGAGGACAATCTTACTTCTGTATTCATCATTT  99
      |||| || |||| ||| |||| ||| ||| |||||||||| |||||||| 
seq2  CCTA-GC-TGTG-AGA-CAGA-GAC-ATC-TACTTCTGTAATCATCATT-  90

seq1  GGTTGTAGAGGTTTTTTGGTTGGTTGGTTCTCTTTCTTTGAGGCAGGGTC  149
         |||||| ||||||  ||||  ||||||||||||||||| ||||||||
seq2  --GTGTAGAAGTTTTT--GTTG--TGGTTCTCTTTCTTTGAAGCAGGGTC  134

seq1  TCTCATTGGCTAGAATGTCTACATTGGGTATGTTGGTTAACCAGTGAGCT  199
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTCA-TGGCTAGAATGTCTACATTGGGTATG-TGGTTAACCAGTGAGCT  182

seq1  TCAGGGATCTCTGCCTGTCCATCATAAGGATTATTGTAAGCATACTCCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATCTCTGCCTGTCCATCATAAGGATTATTGTAAGCATACTCCAC  232

seq1  CATGCCTTGGTTTGTTTGTTTTATATGTGTTATAGGTCTCAAGCTCAGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTGGTTTGTTTGTTTTATATGTGTTATAGGTCTCAAGCTCAGAT  282

seq1  ACATTTGTGTGGTGAATCAATCACTGGCAGTGCCATCTCCCTGAACAGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTGTGGTGAATCAATCACTGGCAGTGCCATCTCCCTGAACAGTC  332

seq1  CATTCATAAACTTGTCTCTAGTTTTTCACTTCTTCAGGGCAACAGCCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATAAACTTGTCTCTAGTTTTTCACTTCTTCAGGGCAACAGCCAGA  382

seq1  AAGTATCTGGGTTAATCTTCTGAGCAACATGACAGAAACACCTAATGTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTGGGTTAATCTTCTGAGCAACATGACAGAAACACCTAATGTAA  432

seq1  TCAACCCTATAAAAGGCAAGAAAAGACTGTTGGATTCTGAGGGTTTCGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTATAAAAGGCAAGAAAAGACTGTTGGATTCTGAGGGTTTCGTT  482

seq1  GGTGGTTGCTTAGCTTGGCCTCGTGCACATGCACAGAACATCACAGTGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTGCTTAGCTTGGCCTCGTGCACATGCACAGAACATCACAGTGGC  532

seq1  AGGCCTATGTGGAGAAGGACGATGTTCAACTCATAGCACTTGGAAACAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTATGTGGAGAAGGACGATGTTCAACTCATAGCACTTGGAAACAAG  582

seq1  GCAAGAAGAAATAAACATATGGGGAACCATAAACAGCCTTGGAAGGAGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGAAATAAACATATGGGGAACCATAAACAGCCTTGGAAGGAGAC  632

seq1  AGCTTTCTCCTTTATTTCTACTGGTTAAGAACCAGCTCAGAAATTTCTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTCCTTTATTTCTACTGGTTAAGAACCAGCTCAGAAATTTCTAG  682

seq1  AACTTCCCCAACTGGAGATCAAGCATTTGACACCTGAGACTGTTGGCGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCCAACTGGAGATCAAGCATTTGACACCTGAGACTGTTGGCGAC  732

seq1  ATTTTATAATCAGATAATGTCTAACAGGAATGAATAGAATATTCTCCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAATCAGATAATGTCTAACAGGAATGAATAGAATATTCTCCTTT  782

seq1  TCTCTGACCATCTCAACCCCACACTGTTTATGAATTTGGTTTTAAAATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGACCATCTCAACCCCACACTGTTTATGAATTTGGTTTTAAAATGT  832

seq1  CAAAAAAGAAGACCATGTGATCCATCAATCTATCCTGTAAACTATCACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGAAGACCATGTGATCCATCAATCTATCCTGTAAACTATCACTT  882

seq1  AACAGCTTAGTTAATTAGTATTTTAAGGAATGGCCAGATAGGTTCAGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTAGTTAATTAGTATTTTAAGGAATGGCCAGATAGGTTCAGTAA  932

seq1  AGGACCTGCGACCTGTAGAACCTATTTGATTTCTTCATAAAAGGAATGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTGCGACCTGTAGAACCTATTTGATTTCTTCATAAAAGGAATGCA  982

seq1  GGTCTGAACAGAGCCTCACTCATCTCTGTAGAGCTGGAGAGAAATCGTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAACAGAGCCTCACTCATCTCTGTAGAGCTGGAGAGAAATCGTTC  1032

seq1  CCAAGATGACTCTAGTGTGAGTCGGGGGAGACGCTGTGAAATCACATGAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGACTCTAGTGTGAGTCGGGGGAGACGCTGTGAAATCACATGAC  1082

seq1  TGTCTCCCATCAGTGAAAGTTACTGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  TGTCTCCCATCAGTGAAAGTTACTGAATTC  1112

seq1: chr10_5191831_5192866
seq2: B6Ng01-051M16.g_67_1095

seq1  GAATTCCCATTTCTCTGGACAAGGCTTCCAATAACCTACTTTGTGTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTCTCTGGACAAGGCTTCCAATAACCTACTTTGTGTGTAC  50

seq1  CTCCAACTTGGAAAACTATGCATGGCTCACCTACTCTTAAGTAAGCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTTGGAAAACTATGCATGGCTCACCTACTCTTAAGTAAGCCACC  100

seq1  CCTGTTTGCCCACAGCTTTACAGTAGTCCGAACAGACTCCTGTCAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTGCCCACAGCTTTACAGTAGTCCGAACAGACTCCTGTCAGGAGT  150

seq1  ACTTCCATTCAGAGGGGAAGCACAGACTCAGGATAAGACTTCAGTGACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATTCAGAGGGGAAGCACAGACTCAGGATAAGACTTCAGTGACGT  200

seq1  CCTTGCTGGATGGGCTGAGCCAGGCCTTCGGGGAGGCGTCATCACAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGGATGGGCTGAGCCAGGCCTTCGGGGAGGCGTCATCACAGGTA  250

seq1  TGCCTGGGCCATCATTGTACTTGTCTTGGTCTTGTCTTTCTGGGACTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGCCATCATTGTACTTGTCTTGGTCTTGTCTTTCTGGGACTTGT  300

seq1  TCATCTGAACTTTGCAAAGTTGTTTCATCTTTGCCCATGACTGTTGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGAACTTTGCAAAGTTGTTTCATCTTTGCCCATGACTGTTGAGGC  350

seq1  CTAGCACTAGTGATGAGTCCTGGAGCTTACAGGTGCTAATTCCTGAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTAGTGATGAGTCCTGGAGCTTACAGGTGCTAATTCCTGAATAT  400

seq1  CCGTTTGCTCCATTATTTCTCTATAGTTCTTCAAAATACTGAAATGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTGCTCCATTATTTCTCTATAGTTCTTCAAAATACTGAAATGTATT  450

seq1  AATATTATTATTATTATGATGATGATGATGACGACTAAAAGATGAGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTATTATTATGATGATGATGATGACGACTAAAAGATGAGTTGG  500

seq1  GAGTGGAGAGGTGGAGGCAGGGTCTCTTGTAGCCAAAGCTGCCCTCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGAGGTGGAGGCAGGGTCTCTTGTAGCCAAAGCTGCCCTCAGAT  550

seq1  TCACTTCTCAGCTGTGGATGAGCTTAACTGCCTCATCTTCCTGTCTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCAGCTGTGGATGAGCTTAACTGCCTCATCTTCCTGTCTTCAG  600

seq1  TTCCCGAGAGCTGGGGTTCCAGGTCTGTGGCATTACACCTGGATGGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGAGAGCTGGGGTTCCAGGTCTGTGGCATTACACCTGGATGGAGAC  650

seq1  TGATTGTCTTCTGCGTGTTGCGTGTCTCTCTGTGTTCCCCAGAGTGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTCTTCTGCGTGTTGCGTGTCTCTCTGTGTTCCCCAGAGTGGAGG  700

seq1  GACAGACAGACAGAGCATTCACTTGGAGCAGAAGCTATATGACGGAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGACAGAGCATTCACTTGGAGCAGAAGCTATATGACGGAGTCT  750

seq1  CAGCCACTTCCACCTGGTTGAATGACGTCGAGGAGCGCTTA-TTTGTAGC  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGCCACTTCCACCTGGTTGAATGACGTCGAGGAGCGCTTATTTTGTAGC  800

seq1  CACGGCACCTTTGCCAGAAGAAACAGAAGCTTGTCTCTTCAACCAGGAGG  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACGGCACCTTTGCCAGAAGAAACAGAAGCTTGTCTC-TCAACCAGGAGG  849

seq1  TAAGGTTGGCAATTTCTGTCCATG-CATGAAATCTCAAAGCAATTACAAT  898
      ||||| |||||||||||||||||| | |||||||||||||||||||| ||
seq2  TAAGG-TGGCAATTTCTGTCCATGTCTTGAAATCTCAAAGCAATTAC-AT  897

seq1  TAGTAACGAGTAA-TTATATTTACAAATATGGAATACCAAGAACAAGACA  947
      ||||||||||||| |||||||||| ||||||| |||||||| ||||||||
seq2  TAGTAACGAGTAATTTATATTTAC-AATATGG-ATACCAAG-ACAAGACA  944

seq1  GCTCTAATAAAATGCTATGGTGTGTTTCCAAGAAAAATAGTGTGGGACAG  997
      ||||| ||||| ||||||||||||||||| ||||||||||||||||||||
seq2  GCTCT-ATAAATTGCTATGGTGTGTTTCC-AGAAAAATAGTGTGGGACAG  992

seq1  ACTTTTTTAAACATAAAAGCTCTCAAAGACATGTATGAT  1036
      || ||||||||||| |||||||||||||| |||||||||
seq2  AC-TTTTTAAACAT-AAAGCTCTCAAAGAAATGTATGAT  1029