BAC Information

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BAC

Clone NameB6Ng01-052C11
Chromosome10 (Build37)
Map Location 53,042,586 - 53,185,939
singlet/doubletdoublet
Overlap genePln
Upstream geneGopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
Downstream geneEG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052C11.bB6Ng01-052C11.g
ACCDH875592DH875593
length1,008923
definitionDH875592|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C11, 5' end.DH875593|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,042,586 - 53,043,601)(53,185,015 - 53,185,939)
sequence
gaattcaaacaggctcatttcatcaaactaatacaaaagcaggcttgtgg
tttcaatccttaatgctctgtagacacatttttggttccccctctgaagt
ttctctaatgcatttactaacacagtatatatcaacaactctaaaatttt
agataaaatgaataatttcctaagaaactgtcaattttttaatattttct
tgagtaatttttatattaatgaaatagagaggattagaaaaaattaaact
attcatcaagtaaagtcataactttacaggtagtttctatttgaatgaaa
aaactcaaaacttttgagtaaggtaatgtggtgctttgaatgagaacggc
tcatatacttgaattcttggtccccaattggtagattggtttggtaaggc
ttagggggtatggtcttgctggaggaagtggtaccttactggagagattg
tgtaactttgcacacccattctctccctctatgcctccaacttgaagact
gagatttaagctctctgttactgctccagcaccatgtcttgcctgctgct
gtaccatcatgaccatgggctaatcctctgtaagtgtcagcaagcctcca
atgaatactttcttttataagttgctttggtcatggtgtctcttcacagc
aataaaaaagtaactctgacaagtaattagacagaatttgtacagcaatg
actgggctgtcctgcctagtcacaaatggaaatgtgcctagtcctactgc
aacttgatatgccaagctgggttgatatccctgggaggcctcatctttcc
tgaggagagagaatgagagaatgcagagaagagggaagagagggggctgg
aaagaagaggggagagaggtagctgcatggggatgtaagtagattattaa
ttcatttctaaagaagaaattttgaaatgaaatagaggatatccattcta
ttttttgaaatatggaaagggagacacttcttttgacaggattccctctt
ctatatcc
gaattctatacagctacacaagaaagctgtcagagactcacagaatgtaa
aaaggagaataatatctattagtgttaataggaacctacacaaatgtaaa
actaacactcaataggattggatgaacctgtcaagacagtggatcgttcc
catttttaaataaaactgttaatgtttaatttgataacacaattatgatt
tagttaaaagagaaaagaaaagtgtttataaatcttaggtggtagctggt
agctagaaggagaaggtaataataaaaaaaaagaggcagagtaacccatt
acagcctcttcttctctttaaaagcattttctgccagggctgatggacct
catgtgctgagcacacacttgttcttcatggacctatggtccattctctc
acagaactctgaatgcctctcgtgtgagtgttgcctctctgttctcaggt
ggggacatggctgtatagttgaccacagttgggacatagacacagcagga
acacagagacttgcttttcgcatccagttttcggattttcaaagcatttg
accacatatttgttcagtgtttttcctgtggatcaaaggtatccctttca
tggaaactgatcacacaaatgatttctatgatttctttcccacacactca
gtactcaccacatgatcagtaaaaagtgtccttttcacttaaattgctta
cattcctatcttttaaaaggcatacacattcgtaacaaaggggtttctaa
ccatgctagctcagatcattcaaaagtcactggaagcgaactctatggat
ttttttcttttgaagagaaagatgaagggaggaggaaaaaaggaagatag
ggaggaaggaaggagaaaaggaagcttaccaatcttgttttctcaaagta
atacaggaagaaaaggagaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53042586_53043601
seq2: B6Ng01-052C11.b_46_1053

seq1  GAATTCAAACAGGCTCATTTCATCAAACTAATACAAAAGCAGGCTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGGCTCATTTCATCAAACTAATACAAAAGCAGGCTTGTGG  50

seq1  TTTCAATCCTTAATGCTCTGTAGACACATTTTTGGTTCCCCCTCTGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCCTTAATGCTCTGTAGACACATTTTTGGTTCCCCCTCTGAAGT  100

seq1  TTCTCTAATGCATTTACTAACACAGTATATATCAACAACTCTAAAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAATGCATTTACTAACACAGTATATATCAACAACTCTAAAATTTT  150

seq1  AGATAAAATGAATAATTTCCTAAGAAACTGTCAATTTTTTAATATTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATGAATAATTTCCTAAGAAACTGTCAATTTTTTAATATTTTCT  200

seq1  TGAGTAATTTTTATATTAATGAAATAGAGAGGATTAGAAAAAATTAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATTTTTATATTAATGAAATAGAGAGGATTAGAAAAAATTAAACT  250

seq1  ATTCATCAAGTAAAGTCATAACTTTACAGGTAGTTTCTATTTGAATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAAGTAAAGTCATAACTTTACAGGTAGTTTCTATTTGAATGAAA  300

seq1  AAACTCAAAACTTTTGAGTAAGGTAATGTGGTGCTTTGAATGAGAACGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAACTTTTGAGTAAGGTAATGTGGTGCTTTGAATGAGAACGGC  350

seq1  TCATATACTTGAATTCTTGGTCCCCAATTGGTAGATTGGTTTGGTAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACTTGAATTCTTGGTCCCCAATTGGTAGATTGGTTTGGTAAGGC  400

seq1  TTAGGGGGTATGGTCTTGCTGGAGGAAGTGGTACCTTACTGGAGAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGGTATGGTCTTGCTGGAGGAAGTGGTACCTTACTGGAGAGATTG  450

seq1  TGTAACTTTGCACACCCATTCTCTCCCTCTATGCCTCCAACTTGAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTTGCACACCCATTCTCTCCCTCTATGCCTCCAACTTGAAGACT  500

seq1  GAGATTTAAGCTCTCTGTTACTGCTCCAGCACCATGTCTTGCCTGCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTAAGCTCTCTGTTACTGCTCCAGCACCATGTCTTGCCTGCTGCT  550

seq1  GTACCATCATGACCATGGGCTAATCCTCTGTAAGTGTCAGCAAGCCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATCATGACCATGGGCTAATCCTCTGTAAGTGTCAGCAAGCCTCCA  600

seq1  ATGAATACTTTCTTTTATAAGTTGCTTTGGTCATGGTGTCTCTTCACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACTTTCTTTTATAAGTTGCTTTGGTCATGGTGTCTCTTCACAGC  650

seq1  AATAAAAAAGTAACTCTGACAAGTAATTAGACAGAATTTGTACAGCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAGTAACTCTGACAAGTAATTAGACAGAATTTGTACAGCAATG  700

seq1  ACTGGGCTGTCCTGCCTAGTCACAAATGGAAATGTGCCTAGTCCTACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTGTCCTGCCTAGTCACAAATGGAAATGTGCCTAGTCCTACTGC  750

seq1  AACTTGATATGCCAAGCTGGGTTGATATCCCTGGGAGGCCTCATCTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATATGCCAAGCTGGGTTGATATCCCTGGGAGGCCTCATCTTTCC  800

seq1  TGAGGAGAGAGAATGAGAGAATGCAGGAGAAGAGGGAAGAGAGGGGGCTG  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAGGAGAGAGAATGAGAGAATGCA-GAGAAGAGGGAAGAGAGGGGGCTG  849

seq1  G-AAGAAGAGGGGAGAGAGGTAGCTGCAATGGGGATGTAAGTAGATTAAT  899
      | ||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GAAAGAAGAGGGGAGAGAGGTAGCTGC-ATGGGGATGTAAGTAGATT-AT  897

seq1  TAATTCATTCATAAAGAAGAAATTTTGAAATGAAAAATAGAGGATAGTCC  949
      |||||||||  |||||||||||||||||||||  |||||||||||| |||
seq2  TAATTCATTTCTAAAGAAGAAATTTTGAAATG--AAATAGAGGATA-TCC  944

seq1  ACTCTATTTTTTGAAAATAATGGAAAAGGGAGACACTTTCTATGACAGTA  999
      | ||||||||||||||   |||| ||||||||||||||  | |||||| |
seq2  ATTCTATTTTTTGAAA--TATGG-AAAGGGAGACACTTCTTTTGACAGGA  991

seq1  TTCCCTCTTCTATATCC  1016
      |||||||||||||||||
seq2  TTCCCTCTTCTATATCC  1008

seq1: chr10_53185015_53185939
seq2: B6Ng01-052C11.g_69_991 (reverse)

seq1  CCTTTCTTCCTTTTCTTTCCTTGTATTTCTTTTGAAGAAAACAAGATTGG  50
      |||||| ||||||||||  | |||||| ||||   |||||||||||||||
seq2  CCTTTC-TCCTTTTCTT--CCTGTATTACTTT--GAGAAAACAAGATTGG  45

seq1  TAAGCTTCCTTTTCTCCTTCCTTCCTCCCTTTCTTCCTTTTTTTCCTCCT  100
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  TAAGCTTCCTTTTCTCCTTCCTTCCTCCCTATCTTCC-TTTTTTCCTCCT  94

seq1  CCCTTCATCTTTCTCTTC-AAAGAAAAAAATCCATAGAGTTCGCTTCCAG  149
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCTTCATCTTTCTCTTCAAAAGAAAAAAATCCATAGAGTTCGCTTCCAG  144

seq1  TGACTTTTGAATGATCTGAGCTAGCATGGTTAGAAACCCCTTTGTTACGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTGAATGATCTGAGCTAGCATGGTTAGAAACCCCTTTGTTACGA  194

seq1  ATGTGTATGCCTTTT-AAAGATAGGAATGTAAGCAATTTAAGTG-AAAGG  247
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  ATGTGTATGCCTTTTAAAAGATAGGAATGTAAGCAATTTAAGTGAAAAGG  244

seq1  ACACTTTTTACTGATCATGTGGTGAGTACTGAGTGTGTGGGAAAGAAATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTTACTGATCATGTGGTGAGTACTGAGTGTGTGGGAAAGAAATC  294

seq1  ATAG-AATCATTTGTGTGATCAGTTTCCATGAAAGGGATACCTTTGATCC  346
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATCATTTGTGTGATCAGTTTCCATGAAAGGGATACCTTTGATCC  344

seq1  ACAGGAAAAACACTGAACAAATATGTGGTCAAATGCTTTGAAAATCCGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAAACACTGAACAAATATGTGGTCAAATGCTTTGAAAATCCGAA  394

seq1  AACTGGATGCGAAAAGCAAGTCTCTGTGTTCCTGCTGTGTCTATGTCCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATGCGAAAAGCAAGTCTCTGTGTTCCTGCTGTGTCTATGTCCCA  444

seq1  ACTGTGGTCAACTATACAGCCATGTCCCCACCTGAGAACAGAGAGGCAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTCAACTATACAGCCATGTCCCCACCTGAGAACAGAGAGGCAAC  494

seq1  ACTCACACGAGAGGCATTCAGAGTTCTGTGAGAGAATGGACCATAGGTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACGAGAGGCATTCAGAGTTCTGTGAGAGAATGGACCATAGGTCC  544

seq1  ATGAAGAACAAGTGTGTGCTCAGCACATGAGGTCCATCAGCCCTGGCAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAACAAGTGTGTGCTCAGCACATGAGGTCCATCAGCCCTGGCAGA  594

seq1  AAATGCTTTTAAAGAGAAGAAGAGGCTGTAATGGGTTACTCTGCCTCTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTTAAAGAGAAGAAGAGGCTGTAATGGGTTACTCTGCCTCTTT  644

seq1  TTTTTTATTATTACCTTCTCCTTCTAGCTACCAGCTACCACCTAAGATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTATTACCTTCTCCTTCTAGCTACCAGCTACCACCTAAGATTT  694

seq1  ATAAACACTTTTCTTTTCTCTTTTAACTAAATCATAATTGTGTTATCAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACTTTTCTTTTCTCTTTTAACTAAATCATAATTGTGTTATCAAA  744

seq1  TTAAACATTAACAGTTTTATTTAAAAATGGGAACGATCCACTGTCTTGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTAACAGTTTTATTTAAAAATGGGAACGATCCACTGTCTTGAC  794

seq1  AGGTTCATCCAATCCTATTGAGTGTTAGTTTTACATTTGTGTAGGTTCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCATCCAATCCTATTGAGTGTTAGTTTTACATTTGTGTAGGTTCCT  844

seq1  ATTAACACTAATAGATATTATTCTCCTTTTTACATTCTGTGAGTCTCTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACTAATAGATATTATTCTCCTTTTTACATTCTGTGAGTCTCTGA  894

seq1  CAGCTTTCTTGTGTAGCTGTATAGAATTC  925
      |||||||||||||||||||||||||||||
seq2  CAGCTTTCTTGTGTAGCTGTATAGAATTC  923