BAC Information

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BAC

Clone NameB6Ng01-052K24
Chromosome10 (Build37)
Map Location 27,877,864 - 28,000,526
singlet/doubletdoublet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052K24.bB6Ng01-052K24.g
ACCDH875965DH875966
length1,1171,062
definitionDH875965|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K24, 5' end.DH875966|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,999,401 - 28,000,526)(27,877,864 - 27,878,939)
sequence
gaattcaactttttctaacaccaaagaaagtataaaaaaacagcactaag
aatcaacactaagacaagttccttaagctatttttctttgagagatgata
agatgttttgcctagaatttaaagagcatgagatttccattatgattgta
cttccaagggcttcttatttccattacaacactcattaaataattacgtg
aagtctagagacaaggagaaccacagagaagtctatcttgagaagacaaa
ggcctcactatagttaggtgggagggcgcagccttggaagacactaatta
gttgtacagttctgagcatgaaaactgcctagaggtgtgttgatactttg
tctgtggtgtactcaatagaaatgagaatacagccctaggtgcgtctcta
ctcctcactgagaaactactagagatgaagtgtgtcttcatagtctggcc
aatccacacagaggcaggatgctgaggtggggaacacagctcatgtcact
gaccctggatacatcacagagagaaagcagacttgtatcaaagaaacttt
ggaacttacttatctccccaggatttacaagtcacataggagaggtaatt
tcagtgcatggtaacaatgaaaacactctttccatttaagctagagagga
gaagaaatgtttcatagtaaaatacacaaagcacctacgtcttctaaaag
acagttgaacaaaagacaaatcctggtttgttcagccactgtcaggtgtg
tgatgctcatattccatgtggtcaatgggtctctgacagcagaggttaga
gagtaagatcaggcaaacctttcacgttaaagtttttaaccctataaatg
gcggtgggagtactttacccctattaagaaagaccaaaaagtgcttagtt
gtttcataattggaagagtgttaaatttctctattcttaccttctagata
gattcttggtgaaagtctcaaaaaaaaaaagatttaatgtaagtttgaaa
acataggaagtgttttttagattctagactacctgttagaagctatcctt
tgggtagtcgtagcttatctggatataccgcagtaatgttgaaattgaaa
ctactaaccatgaagtt
gaattctgagccagaacagctgagttgaaccagcgagtcagagttcagaa
agagctagaatgggtgagataattcagcagcaagtatcagaggctgaaaa
cattctaggcctagatacgattgtacagaggctggaagcttgcaggacaa
ggcctaggttagcagattagggcagtaagccttagatacaacaattacat
taggtgggtagaagttacttgtacagtggactcggtgtcagttgagaaca
gcacttagtatggggataggaaacttggtgaagagcatctgactgaagac
tcagggccagcccttttcccaccttgtttcccagctgctctacagcattc
acttcttcatgcacccttctctgatagccttgactcatgggctaacacag
aatctagccaagcaacttttcttcctttgtggtgtgatttcagttctcaa
gcattgtattctgttgagtccatctgcacatactttaaaaactatcactt
cactcacactcaccatgttttatttgatgccatctagatagctatcatat
ttctcctgtcttagtcagggtcttactgctgtgaacagacaccatgaccc
aggcaactcttataaggacaacatttaattgggactagcttacaggttta
gagtttcagtccattatcatcaagataagaatatggctgcatccaggcag
gcatgtcgcaggaggagctgagagttctacatcttcatctgagggctgct
agtggaagactgactcccaggctgctaggatgaaggtcttaaaacccaca
cccacagtggcacacctcctccaacaaggacacacctactcaaaggaggc
aacaactcctaatagtgctactccctggacagcatatacaaaccatcaca
tctcctttgctctacttaatatcttaagtcttttccctaaagagcttttg
tctttggattgcaagcacaaccgtcttacattccttctcgtctcctgatc
ttttgtgctcttcctttggtgtgtcaccctgccaacattttctacccctg
ttcttccctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_27999401_28000526
seq2: B6Ng01-052K24.b_44_1160 (reverse)

seq1  AACTTCCCTGTTAGTTAGTTTCATTTCAAACATTAACTGC-GTATATCCA  49
      ||||||   ||||| |||||||| ||  |||||| ||||| |||||||||
seq2  AACTTCATGGTTAG-TAGTTTCAATTTCAACATT-ACTGCGGTATATCCA  48

seq1  AAT-AGCTACGACTACCCAAAGGATAGCTTCTAACAGGTAGTCCTAGAAT  98
       || |||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATAAGCTACGACTACCCAAAGGATAGCTTCTAACAGGTAGT-CTAGAAT  97

seq1  CTAAAAAACACTTCCTATGTTTTCAAACTTACATTTAAATCTTTTTTTTT  148
      ||||||||||||||||||||||||||||||||| |||||||   ||||||
seq2  CTAAAAAACACTTCCTATGTTTTCAAACTTACA-TTAAATC---TTTTTT  143

seq1  TTTTTGAGACTTTCACCAAGATTCTATCTTAGAAGGTAAGAATAGAGAAA  198
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  TTTTTGAGACTTTCACCAAGAATCTATC-TAGAAGGTAAGAATAGAGAAA  192

seq1  TTTAACACTCTTCCCAATTATTGAAACAACTAAGCACTTTTTGGTCTTTC  248
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  TTTAACACTCTT-CCAATTA-TGAAACAACTAAGCACTTTTTGGTCTTTC  240

seq1  TTAATAGGGGTAAAGTACTCCCCACCGCCATTTATAGGGTTAAAAACTTT  298
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAATAGGGGTAAAGTACT-CCCACCGCCATTTATAGGGTTAAAAACTTT  289

seq1  AACCTGAAAGGTTTGCCTGATCTTACTCTCTAACCTCTGCTGTCAGAGAC  348
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAAAGGTTTGCCTGATCTTACTCTCTAACCTCTGCTGTCAGAGAC  339

seq1  CCATTGACCACATGGAATATGAGCATCACACACCTGACAGTGGCTGAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGACCACATGGAATATGAGCATCACACACCTGACAGTGGCTGAACA  389

seq1  AACCAGGATTTGTCTTTTGTTCAACTGTCTTTTAGAAGACGTAGGTGCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGATTTGTCTTTTGTTCAACTGTCTTTTAGAAGACGTAGGTGCTT  439

seq1  TGTGTATTTTACTATGAAACATTTCTTCTCCTCTCTAGCTTAAATGGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTTACTATGAAACATTTCTTCTCCTCTCTAGCTTAAATGGAAA  489

seq1  GAGTGTTTTCATTGTTACCATGCACTGAAATTACCTCTCCTATGTGACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTTCATTGTTACCATGCACTGAAATTACCTCTCCTATGTGACTT  539

seq1  GTAAATCCTGGGGAGATAAGTAAGTTCCAAAGTTTCTTTGATACAAGTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCCTGGGGAGATAAGTAAGTTCCAAAGTTTCTTTGATACAAGTCT  589

seq1  GCTTTCTCTCTGTGATGTATCCAGGGTCAGTGACATGAGCTGTGTTCCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTCTGTGATGTATCCAGGGTCAGTGACATGAGCTGTGTTCCCC  639

seq1  ACCTCAGCATCCTGCCTCTGTGTGGATTGGCCAGACTATGAAGACACACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCATCCTGCCTCTGTGTGGATTGGCCAGACTATGAAGACACACT  689

seq1  TCATCTCTAGTAGTTTCTCAGTGAGGAGTAGAGACGCACCTAGGGCTGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTAGTAGTTTCTCAGTGAGGAGTAGAGACGCACCTAGGGCTGTA  739

seq1  TTCTCATTTCTATTGAGTACACCACAGACAAAGTATCAACACACCTCTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTTCTATTGAGTACACCACAGACAAAGTATCAACACACCTCTAG  789

seq1  GCAGTTTTCATGCTCAGAACTGTACAACTAATTAGTGTCTTCCAAGGCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTTCATGCTCAGAACTGTACAACTAATTAGTGTCTTCCAAGGCTG  839

seq1  CGCCCTCCCACCTAACTATAGTGAGGCCTTTGTCTTCTCAAGATAGACTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTCCCACCTAACTATAGTGAGGCCTTTGTCTTCTCAAGATAGACTT  889

seq1  CTCTGTGGTTCTCCTTGTCTCTAGACTTCACGTAATTATTTAATGAGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGTTCTCCTTGTCTCTAGACTTCACGTAATTATTTAATGAGTGT  939

seq1  TGTAATGGAAATAAGAAGCCCTTGGAAGTACAATCATAATGGAAATCTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGAAATAAGAAGCCCTTGGAAGTACAATCATAATGGAAATCTCA  989

seq1  TGCTCTTTAAATTCTAGGCAAAACATCTTATCATCTCTCAAAGAAAAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTAAATTCTAGGCAAAACATCTTATCATCTCTCAAAGAAAAATA  1039

seq1  GCTTAAGGAACTTGTCTTAGTGTTGATTCTTAGTGCTGTTTTTTTATACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGGAACTTGTCTTAGTGTTGATTCTTAGTGCTGTTTTTTTATACT  1089

seq1  TTCTTTGGTGTTAGAAAAAGTTGAATTC  1126
      ||||||||||||||||||||||||||||
seq2  TTCTTTGGTGTTAGAAAAAGTTGAATTC  1117

seq1: chr10_27877864_27878939
seq2: B6Ng01-052K24.g_67_1128

seq1  GAATTCTGAGCCAGAACAGCTGAGTTGAACCAGCGAGTCAGAGTTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCCAGAACAGCTGAGTTGAACCAGCGAGTCAGAGTTCAGAA  50

seq1  AGAGCTAGAATGGGTGAGATAATTCAGCAGCAAGTATCAGAGGCTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGAATGGGTGAGATAATTCAGCAGCAAGTATCAGAGGCTGAAAA  100

seq1  CATTCTAGGCCTAGATACGATTGTACAGAGGCTGGAAGCTTGCAGGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGGCCTAGATACGATTGTACAGAGGCTGGAAGCTTGCAGGACAA  150

seq1  GGCCTAGGTTAGCAGATTAGGGCAGTAAGCCTTAGATACAACAATTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGGTTAGCAGATTAGGGCAGTAAGCCTTAGATACAACAATTACAT  200

seq1  TAGGTGGGTAGAAGTTACTTGTACAGTGGACTCGGTGTCAGTTGAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGGTAGAAGTTACTTGTACAGTGGACTCGGTGTCAGTTGAGAACA  250

seq1  GCACTTAGTATGGGGATAGGAAACTTGGTGAAGAGCATCTGACTGAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAGTATGGGGATAGGAAACTTGGTGAAGAGCATCTGACTGAAGAC  300

seq1  TCAGGGCCAGCCCTTTTCCCACCTTGTTTCCCAGCTGCTCTACAGCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCCAGCCCTTTTCCCACCTTGTTTCCCAGCTGCTCTACAGCATTC  350

seq1  ACTTCTTCATGCACCCTTCTCTGATAGCCTTGACTCATGGGCTAACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCATGCACCCTTCTCTGATAGCCTTGACTCATGGGCTAACACAG  400

seq1  AATCTAGCCAAGCAACTTTTCTTCCTTTGTGGTGTGATTTCAGTTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGCCAAGCAACTTTTCTTCCTTTGTGGTGTGATTTCAGTTCTCAA  450

seq1  GCATTGTATTCTGTTGAGTCCATCTGCACATACTTTAAAAACTATCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTATTCTGTTGAGTCCATCTGCACATACTTTAAAAACTATCACTT  500

seq1  CACTCACACTCACCATGTTTTATTTGATGCCATCTAGATAGCTATCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACTCACCATGTTTTATTTGATGCCATCTAGATAGCTATCATAT  550

seq1  TTCTCCTGTCTTAGTCAGGGTCTTACTGCTGTGAACAGACACCATGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTCTTAGTCAGGGTCTTACTGCTGTGAACAGACACCATGACCC  600

seq1  AGGCAACTCTTATAAGGACAACATTTAATTGGGACTAGCTTACAGGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTCTTATAAGGACAACATTTAATTGGGACTAGCTTACAGGTTTA  650

seq1  GAGTTTCAGTCCATTATCATCAAGATAAGAATATGGCTGCATCCAGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCAGTCCATTATCATCAAGATAAGAATATGGCTGCATCCAGGCAG  700

seq1  GCATGTCGCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAGGGCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCGCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAGGGCTGCT  750

seq1  AGTGGAAGACTGACTCCCAGGCTGCTAGGATGAAGGTCTTAAAACCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGACTGACTCCCAGGCTGCTAGGATGAAGGTCTTAAAACCCACA  800

seq1  CCCACAGTGGCACACCTCCTCCAACAAGGACACACCTACTCAAAGGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTGGCACACCTCCTCCAACAAGGACACACCTACTCAAAGGAGGC  850

seq1  AACAACTCCTAATAGTGCTACTCCCTGGGACAAGCATATACAAACCATCA  900
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  AACAACTCCTAATAGTGCTACTCCCT-GGAC-AGCATATACAAACCATCA  898

seq1  CATCTCCTTTGCTCTACTTAATATCTTAAGTCTTTTCCCTAAAGAGCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTTTGCTCTACTTAATATCTTAAGTCTTTTCCCTAAAGAGCTTT  948

seq1  TGTCTTTGGATTGCAAGCACAACCGTCTTACATTTCCTTCTCGTTCTCCT  1000
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  TGTCTTTGGATTGCAAGCACAACCGTCTTACA-TTCCTTCTCG-TCTCCT  996

seq1  GTTCTTTTGTGCCTCCTTCCTTTGGTGTGTCCACCCCTTGCCAACATTTT  1050
      | ||||||||||   ||||||||||||||| |||||  ||||||||||||
seq2  GATCTTTTGTGC--TCTTCCTTTGGTGTGT-CACCC--TGCCAACATTTT  1041

seq1  TTCCTACCCCTGTTCTCTTCCCTACT  1076
         ||||||||||  |||||||||||
seq2  ---CTACCCCTGT--TCTTCCCTACT  1062