BAC Information

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BAC

Clone NameB6Ng01-052L01
Chromosome10 (Build37)
Map Location 49,779,561 - 49,918,904
singlet/doubletdoublet
Overlap genenone
Upstream geneGrik2
Downstream geneLOC629652, Ascc3, Sim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052L01.bB6Ng01-052L01.g
ACCDH875967DH875968
length997783
definitionDH875967|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L01, 5' end.DH875968|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,779,561 - 49,780,326)(49,918,128 - 49,918,904)
sequence
gaattctacaaaaatttcaaaaataagaatgaaatataagtgacttggaa
catggagctaaaacaggaaatttatagtacaaaatgaatatatcagaata
gaggaaaagcataatgaaaaatttcatgaatatcaataggataaggtgat
attatgtatagcttcatgccaataaagttgaatattttgaagaaacaaat
aaagtcacataaatacgtgaaatagaaatattctctgacaagaagtaatt
ttggctgacttaacagactttttttatttgatattttctttatatacatt
tcaaatattatctcctttcctggtttcccctctaaaagtcccctatccca
ttcctcctccccctgctcaccaacccacccacttctgcttccctgccttg
gcattcccctatactggggcatcgagccttcatatgaccaaaggcctctc
ctcccactgatgtccaacaaggccatcctctgctacatatgcagctggag
ccataggtctcttcatgtgtactatttggttggtagtttagttcctggga
gctctgggggtactggttgattcataatgttgttcctcctatgaggctgc
aaacctcttctgctccttgggtcctttctctagttcctccattagagacc
tttgctcagtccaatggttggctgagagcatccacctctgtatttgtcag
gcactggcagagcttctcaggagacagctatatcaggctcctgtcagcaa
gcactggttggcatccacaatagtgtctgggtttggtgactctatatgtg
atggatccccaagtgggtaagtcagtcgcttgatggtttctctttcagtc
tctgctccacactttgtctctgtatctgctcccatgggtatttgttcccc
cttctaaaaaggactgaagtattcacagtttgatcttccttcttttgact
tcatgtggaactgtgaattatatctggggtatccaagttctgggcta
gaattcttgggtacatgtaggtctgtgctaggctggtaggagataacaga
gtagacgggaggacaaagactatttgtacagagagaaacttgacccacag
gtcctacttcagagggcttattcacagaagggaacaaaggctgaacaggg
cagctcgcatgggagaggacagaaggctggaagtgatgacaggtgaggat
ttggatctacacatgtaggaatcttatgtgtcacaggatcagggcttaga
tttttctttttttctgagtgcagaggtgaatgactgtgagtttttaagga
atggtaaagtgatttggttcgtcttttaaacagattgcccagaatgttcc
ctgaaagcaagcagggacccgaatgaagagttaggccatctgttagaaag
aaggagcagtgagctgagggaagatggtgatgaatcgggcaaggtcaccg
ggggaaagctctgagatcatttcttcaacagtccaaggcttgaagttcca
gttggatttttttttaaaccagttagttatgatagagaggaaataggtag
tagaagaggaagggaccagatattaaaagggcagaaaaggacctaagagc
atttctctaaacagctaactctatcaaccaaagtcctttttcacgctgca
gcacacttactgctattcagaggacaaaggtgaggaggtgagggttgctt
ttactcttctttagaggtgacaaagaaaagaaagcgacaatgtcagttag
cacaacatatggactctccctggggccctgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49779561_49780326
seq2: B6Ng01-052L01.b_45_810

seq1  GAATTCTACAAAAATTTCAAAAATAAGAATGAAATATAAGTGACTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAAAATTTCAAAAATAAGAATGAAATATAAGTGACTTGGAA  50

seq1  CATGGAGCTAAAACAGGAAATTTATAGTACAAAATGAATATATCAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCTAAAACAGGAAATTTATAGTACAAAATGAATATATCAGAATA  100

seq1  GAGGAAAAGCATAATGAAAAATTTCATGAATATCAATAGGATAAGGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAGCATAATGAAAAATTTCATGAATATCAATAGGATAAGGTGAT  150

seq1  ATTATGTATAGCTTCATGCCAATAAAGTTGAATATTTTGAAGAAACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTATAGCTTCATGCCAATAAAGTTGAATATTTTGAAGAAACAAAT  200

seq1  AAAGTCACATAAATACGTGAAATAGAAATATTCTCTGACAAGAAGTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACATAAATACGTGAAATAGAAATATTCTCTGACAAGAAGTAATT  250

seq1  TTGGCTGACTTAACAGACTTTTTTTATTTGATATTTTCTTTATATACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGACTTAACAGACTTTTTTTATTTGATATTTTCTTTATATACATT  300

seq1  TCAAATATTATCTCCTTTCCTGGTTTCCCCTCTAAAAGTCCCCTATCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTATCTCCTTTCCTGGTTTCCCCTCTAAAAGTCCCCTATCCCA  350

seq1  TTCCTCCTCCCCCTGCTCACCAACCCACCCACTTCTGCTTCCCTGCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCCCCCTGCTCACCAACCCACCCACTTCTGCTTCCCTGCCTTG  400

seq1  GCATTCCCCTATACTGGGGCATCGAGCCTTCATATGACCAAAGGCCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCCTATACTGGGGCATCGAGCCTTCATATGACCAAAGGCCTCTC  450

seq1  CTCCCACTGATGTCCAACAAGGCCATCCTCTGCTACATATGCAGCTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTGATGTCCAACAAGGCCATCCTCTGCTACATATGCAGCTGGAG  500

seq1  CCATAGGTCTCTTCATGTGTACTATTTGGTTGGTAGTTTAGTTCCTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGTCTCTTCATGTGTACTATTTGGTTGGTAGTTTAGTTCCTGGGA  550

seq1  GCTCTGGGGGTACTGGTTGATTCATAATGTTGTTCCTCCTATGAGGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGGGTACTGGTTGATTCATAATGTTGTTCCTCCTATGAGGCTGC  600

seq1  AAACCTCTTCTGCTCCTTGGGTCCTTTCTCTAGTTCCTCCATTAGAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCTTCTGCTCCTTGGGTCCTTTCTCTAGTTCCTCCATTAGAGACC  650

seq1  TTTGCTCAGTCCAATGGTTGGCTGAGAGCATCCACCTCTGTATTTGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCAGTCCAATGGTTGGCTGAGAGCATCCACCTCTGTATTTGTCAG  700

seq1  GCACTGGCAGAGCTTCTCAGGAGACAGCTATATCAGGCTCCTGTCAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGCAGAGCTTCTCAGGAGACAGCTATATCAGGCTCCTGTCAGCAA  750

seq1  GCACTGGTTGGCATCC  766
      ||||||||||||||||
seq2  GCACTGGTTGGCATCC  766

seq1: chr10_49918128_49918904
seq2: B6Ng01-052L01.g_69_851 (reverse)

seq1  CCTCA-GGCCCCAGGG-GAGTCCATATGTTGTGCT-ACTGACATTGTCGC  47
      ||||| |||||||||| |||||||||||||||||| ||||||||||||||
seq2  CCTCAGGGCCCCAGGGAGAGTCCATATGTTGTGCTAACTGACATTGTCGC  50

seq1  TTTCTTTTCTTTGTCACCTCTAATG-AGAGT-AAAGCAACCCTCACCTCC  95
      ||||||||||||||||||||||| | ||||| ||||||||||||||||||
seq2  TTTCTTTTCTTTGTCACCTCTAAAGAAGAGTAAAAGCAACCCTCACCTCC  100

seq1  TCACCTTTGTCCTCTGAATAGCAGTAAGTGTGCTGCAGCGTGAAAAAGGA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTGTCCTCTGAATAGCAGTAAGTGTGCTGCAGCGTGAAAAAGGA  150

seq1  CTTTGGTTGATAGAGTTAGCTG-TTAGGGAAATGCTCTTAGGTCCTTTTC  194
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  CTTTGGTTGATAGAGTTAGCTGTTTAGAGAAATGCTCTTAGGTCCTTTTC  200

seq1  TGCCCTTTTAATATCTGGTCCCTTCCTCTTCTACTACCTATTTCCTCTCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTTAATATCTGGTCCCTTCCTCTTCTACTACCTATTTCCTCTCT  250

seq1  ATCATAACTAACTGGTTTAAAAAAAAATCCAACTGGAACTTCAAGCCTTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAACTAACTGGTTTAAAAAAAAATCCAACTGGAACTTCAAGCCTTG  300

seq1  GACTGTTGAAGAAATGATCTCAGAGCTTTCCCCCGGTGACCTTGCCCGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTGAAGAAATGATCTCAGAGCTTTCCCCCGGTGACCTTGCCCGAT  350

seq1  TCATCACCATCTTCCCTCAGCTCACTGCTCCTTCTTTCTAACAGATGGCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCATCTTCCCTCAGCTCACTGCTCCTTCTTTCTAACAGATGGCC  400

seq1  TAACTCTTCATTCGGGTCCCTGCTTGCTTTCAGGGAACATTCTGGGCAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTCATTCGGGTCCCTGCTTGCTTTCAGGGAACATTCTGGGCAAT  450

seq1  CTGTTTAAAAGACGAACCAAATCACTTTACCATTCCTTAAAAACTCACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAAAGACGAACCAAATCACTTTACCATTCCTTAAAAACTCACAG  500

seq1  TCATTCACCTCTGCACTCAGAAAAAAAGAAAAATCTAAGCCCTGATCCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCACCTCTGCACTCAGAAAAAAAGAAAAATCTAAGCCCTGATCCTG  550

seq1  TGACACATAAGATTCCTACATGTGTAGATCCAAATCCTCACCTGTCATCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATAAGATTCCTACATGTGTAGATCCAAATCCTCACCTGTCATCA  600

seq1  CTTCCAGCCTTCTGTCCTCTCCCATGCGAGCTGCCCTGTTCAGCCTTTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCCTTCTGTCCTCTCCCATGCGAGCTGCCCTGTTCAGCCTTTGT  650

seq1  TCCCTTCTGTGAATAAGCCCTCTGAAGTAGGACCTGTGGGTCAAGTTTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTGTGAATAAGCCCTCTGAAGTAGGACCTGTGGGTCAAGTTTCT  700

seq1  CTCTGTACAAATAGTCTTTGTCCTCCCGTCTACTCTGTTATCTCCTACCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACAAATAGTCTTTGTCCTCCCGTCTACTCTGTTATCTCCTACCA  750

seq1  GCCTAGCACAGACCTACATGTACCCAAGAATTC  777
      |||||||||||||||||||||||||||||||||
seq2  GCCTAGCACAGACCTACATGTACCCAAGAATTC  783