BAC Information

Click to search

BAC

Clone NameB6Ng01-053F05
Chromosome16 (Build37)10 (Build37)
Map Location 17,315,834 - 17,316,93164,838,902 - 64,839,657
singlet/doubletsingletsinglet
Overlap genePik4ca
Upstream geneDnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e
Downstream geneSerpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053F05.bB6Ng01-053F05.g
ACCDH876406DH876407
length1,092756
definitionDH876406|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F05, 5' end.DH876407|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,315,834 - 17,316,931)(64,838,902 - 64,839,657)
sequence
gaattcctgatcctgtctgtgttccaggcctgtggcttcccggaactcag
tatccctgactctgcagcatgactgctttagctgccaaaggcatttctag
ctatgagtcagctatcggcatgcattgagcaagcatgaattttagagttc
agtcctaaaagaatcatgccaacttgttcactgtagaatagaatgacgga
ctctggttttgccataccctttgaaaacggtaacgtagccccagataagg
aagatgtcttgatagctcctctcccgactgagtctgagaaggagcccctg
ctacagagtactgaactggcccagcattcttccagcctgggcagggccct
gccttaacctaggcctctccacctggacataatgatgtggcacctgtgcg
gacttttttcccatctagaacatgccttttctttctctttcttttcttct
cttttagatttatttatttattttattttactttatgtatgtgagtacac
tgtcctgttgctgtcttcagacacaccagaagagggcatcagattccatt
acggatggttgtgagccaccatgtggttgctgggaattgaactcaggacc
tttggaagacagtgttctttaactactgaggcatatctctagccctagaa
catgccttttcatttattgactgactcaggacatgttgcacagtagtctt
aagatggactgtttatgttgttagatctaccacacagccttctgcaagaa
tcacagaccttagtgtactcagaatccctgtgccctggagtttgggtgtt
agtacatagtcactgataaagtttccatatccattaccttaggctagggg
gcttaaggaaagaagtttcctcacaatgatgggcataaaatgtccgaaaa
caagtgttagcagggggagttttctgagatttttctttgaaagcagaatc
cttctctgggttctcatgtggtcttccctgatgtttcacattgctaactt
gcataagtataccagctgtattaggctcagtttccctcatgtgccttaat
cactctttcgaagtcctatcaagtacagtctcattctgagtt
gaattctttttctaggtagcaaatcaatagatttatttattctagggata
tacctcatggtgtctttcattagtctaccagaaaaccctccttataaatt
tgtaggagaataactatatcccctaactgatggaaaccattgtatgtctc
tgagacaatcagtctccgtgttttggagccttgtgttttatactttcaaa
atgattcacaatgattgattttcctttacccatgctttcttaaactttta
aagggcaaggaaagtatttttaaaataaaacacatgtttccttttccaac
ttttaataaaacatgggctgctgtgactggcaaatgatcccacagatttt
aacatctctttacttgtctcccaggtttcaatcagtttgctatcatgaaa
acgtgaacatcctctagttcacctagtaatgctgaatgaagtacttggct
ttgttcaattgattctggtttagtctacaattgtttttaactaactgtta
aactactctccatccaaaaagctatttttaaaatccagttttgggaatag
agacatggtttggtagtaaagaacacttgtttctcttctaaaagaccagt
gtttggttcccactacttaagtcagatggttcacaacctcctgtaactcc
agctttagaggattcaacttcttctccaaggacacctgtactcaaatgca
tgtactcacacagagaaagatgcagagaagggattggtgggaggggagag
gatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_17315834_17316931
seq2: B6Ng01-053F05.b_43_1134 (reverse)

seq1  AACTCAGAATGAGACTGTACTTGGATAGGGCTTCGAAAGAGGTGATTAAA  50
      |||||||||||||||||||||| |||||| |||||||||| |||||| ||
seq2  AACTCAGAATGAGACTGTACTT-GATAGGACTTCGAAAGA-GTGATT-AA  47

seq1  GGCCACTGAGGGAAAACTGAGCCTAATACAGCTGGTATACTTATGCAAGT  100
      |||   |||||| |||||||||||||||||||||||||||||||||||||
seq2  GGCACATGAGGG-AAACTGAGCCTAATACAGCTGGTATACTTATGCAAGT  96

seq1  TAGCAATGTGGAAACATCAGGGAAGACCACATGAGAACACAGAGAAGGAT  150
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  TAGCAATGT-GAAACATCAGGGAAGACCACATGAGAACCCAGAGAAGGAT  145

seq1  TCTGCTTTCAAAGGAGAGATCTCAGAAGACT-CCCCTGCTAACACTTGGT  199
      |||||||||||| || | ||||||||| ||| ||||||||||||||| ||
seq2  TCTGCTTTCAAA-GAAAAATCTCAGAAAACTCCCCCTGCTAACACTT-GT  193

seq1  TCTCGGACATTTTATGCCCATCATTGTGAGGAAACTTCTTTCCTTAAGCC  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGACATTTTATGCCCATCATTGTGAGGAAACTTCTTTCCTTAAGCC  243

seq1  CCCTAGCCTAAGGTAATGGATATGGAAACTTTATCAGTGACTATGTACTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCCTAAGGTAATGGATATGGAAACTTTATCAGTGACTATGTACTA  293

seq1  ACACCAAAACTCCAGGGCACAGGGATTCTGAGTACACTAAGGTCTGTGAT  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAACTCCAGGGCACAGGGATTCTGAGTACACTAAGGTCTGTGAT  343

seq1  TCTTGCAGAAGGCTGTGTGGTAGATCTAACAACATAAACAGTCCATCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGAAGGCTGTGTGGTAGATCTAACAACATAAACAGTCCATCTTA  393

seq1  AGACTACTGTGCAACATGTCCTGAGTCAGTCAATAAATGAAAAGGCATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACTGTGCAACATGTCCTGAGTCAGTCAATAAATGAAAAGGCATGT  443

seq1  TCTAGGGCTAGAGATATGCCTCAGTAGTTAAAGAACACTGTCTTCCAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGCTAGAGATATGCCTCAGTAGTTAAAGAACACTGTCTTCCAAAG  493

seq1  GTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCGTA  543

seq1  ATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAGGACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAGGACAG  593

seq1  TGTACTCACATACATAAAGTAAAATAAAATAAATAAATAAATCTAAAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCACATACATAAAGTAAAATAAAATAAATAAATAAATCTAAAAGA  643

seq1  GAAGAAAAGAAAGAGAAAGAAAAGGCATGTTCTAGATGGGAAAAAAGTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGAAAGAGAAAGAAAAGGCATGTTCTAGATGGGAAAAAAGTCC  693

seq1  GCACAGGTGCCACATCATTATGTCCAGGTGGAGAGGCCTAGGTTAAGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTGCCACATCATTATGTCCAGGTGGAGAGGCCTAGGTTAAGGCA  743

seq1  GGGCCCTGCCCAGGCTGGAAGAATGCTGGGCCAGTTCAGTACTCTGTAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGCCCAGGCTGGAAGAATGCTGGGCCAGTTCAGTACTCTGTAGC  793

seq1  AGGGGCTCCTTCTCAGACTCAGTCGGGAGAGGAGCTATCAAGACATCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTCCTTCTCAGACTCAGTCGGGAGAGGAGCTATCAAGACATCTTC  843

seq1  CTTATCTGGGGCTACGTTACCGTTTTCAAAGGGTATGGCAAAACCAGAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGGGGCTACGTTACCGTTTTCAAAGGGTATGGCAAAACCAGAGT  893

seq1  CCGTCATTCTATTCTACAGTGAACAAGTTGGCATGATTCTTTTAGGACTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCATTCTATTCTACAGTGAACAAGTTGGCATGATTCTTTTAGGACTG  943

seq1  AACTCTAAAATTCATGCTTGCTCAATGCATGCCGATAGCTGACTCATAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAAAATTCATGCTTGCTCAATGCATGCCGATAGCTGACTCATAGC  993

seq1  TAGAAATGCCTTTGGCAGCTAAAGCAGTCATGCTGCAGAGTCAGGGATAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGCCTTTGGCAGCTAAAGCAGTCATGCTGCAGAGTCAGGGATAC  1043

seq1  TGAGTTCCGGGAAGCCACAGGCCTGGAACACAGACAGGATCAGGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCGGGAAGCCACAGGCCTGGAACACAGACAGGATCAGGAATTC  1092

seq1: chr10_64838902_64839657
seq2: B6Ng01-053F05.g_67_822 (reverse)

seq1  TCCATCCTCTCCCCTCCCACCAATCCCTTCTCTGCATCTTTCTCTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTCTCCCCTCCCACCAATCCCTTCTCTGCATCTTTCTCTGTGTG  50

seq1  AGTACATGCATTTGAGTACAGGTGTCCTTGGAGAAGAAGTTGAATCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATGCATTTGAGTACAGGTGTCCTTGGAGAAGAAGTTGAATCCTCT  100

seq1  AAAGCTGGAGTTACAGGAGGTTGTGAACCATCTGACTTAAGTAGTGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGAGTTACAGGAGGTTGTGAACCATCTGACTTAAGTAGTGGGAA  150

seq1  CCAAACACTGGTCTTTTAGAAGAGAAACAAGTGTTCTTTACTACCAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACTGGTCTTTTAGAAGAGAAACAAGTGTTCTTTACTACCAAACC  200

seq1  ATGTCTCTATTCCCAAAACTGGATTTTAAAAATAGCTTTTTGGATGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTATTCCCAAAACTGGATTTTAAAAATAGCTTTTTGGATGGAGA  250

seq1  GTAGTTTAACAGTTAGTTAAAAACAATTGTAGACTAAACCAGAATCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTAACAGTTAGTTAAAAACAATTGTAGACTAAACCAGAATCAATT  300

seq1  GAACAAAGCCAAGTACTTCATTCAGCATTACTAGGTGAACTAGAGGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGCCAAGTACTTCATTCAGCATTACTAGGTGAACTAGAGGATGT  350

seq1  TCACGTTTTCATGATAGCAAACTGATTGAAACCTGGGAGACAAGTAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTTTTCATGATAGCAAACTGATTGAAACCTGGGAGACAAGTAAAGA  400

seq1  GATGTTAAAATCTGTGGGATCATTTGCCAGTCACAGCAGCCCATGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAAAATCTGTGGGATCATTTGCCAGTCACAGCAGCCCATGTTTTA  450

seq1  TTAAAAGTTGGAAAAGGAAACATGTGTTTTATTTTAAAAATACTTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTGGAAAAGGAAACATGTGTTTTATTTTAAAAATACTTTCCTT  500

seq1  GCCCTTTAAAAGTTTAAGAAAGCATGGGTAAAGGAAAATCAATCATTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTAAAAGTTTAAGAAAGCATGGGTAAAGGAAAATCAATCATTGTG  550

seq1  AATCATTTTGAAAGTATAAAACACAAGGCTCCAAAACACGGAGACTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTGAAAGTATAAAACACAAGGCTCCAAAACACGGAGACTGATT  600

seq1  GTCTCAGAGACATACAATGGTTTCCATCAGTTAGGGGATATAGTTATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAGACATACAATGGTTTCCATCAGTTAGGGGATATAGTTATTCT  650

seq1  CCTACAAATTTATAAGGAGGGTTTTCTGGTAGACTAATGAAAGACACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAATTTATAAGGAGGGTTTTCTGGTAGACTAATGAAAGACACCAT  700

seq1  GAGGTATATCCCTAGAATAAATAAATCTATTGATTTGCTACCTAGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATATCCCTAGAATAAATAAATCTATTGATTTGCTACCTAGAAAAA  750

seq1  GAATTC  756
      ||||||
seq2  GAATTC  756