BAC Information

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BAC

Clone NameB6Ng01-053J18
Chromosome10 (Build37)
Map Location 104,875,296 - 105,013,808
singlet/doubletdoublet
Overlap geneTmtc2, EG627573
Upstream geneLOC100042383
Downstream geneBC067068, Ccdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053J18.bB6Ng01-053J18.g
ACCDH876609DH876610
length1,120149
definitionDH876609|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J18, 5' end.DH876610|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,875,296 - 104,876,431)(105,013,660 - 105,013,808)
sequence
gaattcacagtatcttagcctctctcatgctgggattagaaacagatcca
catcacttgtcatttttaaaactacttttaatcggctgtggttttctgtc
aagatctccaacagtaaatttcctttttaaaaatttatttgttttcactt
aaaatatccaccatctagcactgacaaagtgttcaacttgggtattattt
attcccagtatgctttcatttaaaattatttcaaaaactaaatgatatat
agtaaatatgttttctctaagtcaccagaccatgccttcctaagttacca
ccatattgaaagtgctatgacttttctaagacatcacatatacgtatgtc
tactacttaaatattttccaaatcagacacatgctaacttcctgaaacat
atcacaaactactgttgaaaacatttgagacttaaccatatccatatatc
ttttacaactaacatcatcaaggatttcaaggaatgaaacttccccaacc
catttctctatacacagacgcagagttgagccccctccaggctctttgtg
ttccaaggattcgaacataaaatgaaaggctacttcagtagccttttagc
ataagagtcaaagctgaggagtcacagaacaatcgcctcagagactactg
tgacatggtcagatgccacagaaagatgaaagatgaaagcttcccaaggc
agtcatgacactcagagttctaataatatcacatgcagctatttgtgcct
tagactcactgtcactaaataataaactactattagcattaaaggacaac
gtattatgtatgccagtaagtcttatggtaattcactttacaatgtagag
aaatgcacagtaggcaaaggggacagtagatcagtaaacactttaaacct
actgttgggcagaggcacaaacatatatgtataaaacagtagattcactt
gagacatacatgaaagcattgtctcaagttcttgactatgtactgaccat
tatgagccaaatgaacctttgaagaaaaattaaatacaaactacgagaag
ttgcttctccacacaggagcaagccctcttcttctagctccatcattaat
ggttttagtggaacccactg
aatgacagtcagagctacacagagtaaccttgtctcaaaaaaaaaatcaa
aactccacaaacaaacaaacaaacaaacaagcagacaaagatacttagaa
ggaagtgataaaggatgatgggaaagaggggtgtgtatgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104875296_104876431
seq2: B6Ng01-053J18.b_44_1163

seq1  GAATTCACAGTATCTTAGCCTCTCTCATGCTGGGATTAGAAACAGATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTATCTTAGCCTCTCTCATGCTGGGATTAGAAACAGATCCA  50

seq1  CATCACTTGTCATTTTTAAAACTACTTTTAATCGGCTGTGGTTTTCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTGTCATTTTTAAAACTACTTTTAATCGGCTGTGGTTTTCTGTC  100

seq1  AAGATCTCCAACAGTAAATTTCCTTTTTAAAAATTTATTTGTTTTCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCCAACAGTAAATTTCCTTTTTAAAAATTTATTTGTTTTCACTT  150

seq1  AAAATATCCACCATCTAGCACTGACAAAGTGTTCAACTTGGGTATTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCACCATCTAGCACTGACAAAGTGTTCAACTTGGGTATTATTT  200

seq1  ATTCCCAGTATGCTTTCATTTAAAATTATTTCAAAAACTAAATGATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGTATGCTTTCATTTAAAATTATTTCAAAAACTAAATGATATAT  250

seq1  AGTAAATATGTTTTCTCTAAGTCACCAGACCATGCCTTCCTAAGTTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATATGTTTTCTCTAAGTCACCAGACCATGCCTTCCTAAGTTACCA  300

seq1  CCATATTGAAAGTGCTATGACTTTTCTAAGACATCACATATACGTATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGAAAGTGCTATGACTTTTCTAAGACATCACATATACGTATGTC  350

seq1  TACTACTTAAATATTTTCCAAATCAGACACATGCTAACTTCCTGAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTTAAATATTTTCCAAATCAGACACATGCTAACTTCCTGAAACAT  400

seq1  ATCACAAACTACTGTTGAAAACATTTGAGACTTAACCATATCCATATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAACTACTGTTGAAAACATTTGAGACTTAACCATATCCATATATC  450

seq1  TTTTACAACTAACATCATCAAGGATTTCAAGGAATGAAACTTCCCCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAACTAACATCATCAAGGATTTCAAGGAATGAAACTTCCCCAACC  500

seq1  CATTTCTCTATACACAGACGCAGAGTTGAGCCCCCTCCAGGCTCTTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCTATACACAGACGCAGAGTTGAGCCCCCTCCAGGCTCTTTGTG  550

seq1  TTCCAAGGATTCGAACATAAAATGAAAGGCTACTTCAGTAGCC-TTTAGC  599
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCCAAGGATTCGAACATAAAATGAAAGGCTACTTCAGTAGCCTTTTAGC  600

seq1  ATAAGAGTCAAAGCTGAGGAGTCACAGAACAATCGCCTCAGAGACTACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTCAAAGCTGAGGAGTCACAGAACAATCGCCTCAGAGACTACTG  650

seq1  TGACATGGTCAGATGCCACAGAAAGATGAAAGATGAAAGCTTCCCAAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGTCAGATGCCACAGAAAGATGAAAGATGAAAGCTTCCCAAGGC  700

seq1  AGTCATGACACTCAGAGTTCTAATAATATCACATGCAGCTATTTGTGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGACACTCAGAGTTCTAATAATATCACATGCAGCTATTTGTGCCT  750

seq1  TAGACTCACTGTCACTAAATAATAAACTACTATTAGCATTAAAGGACAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCACTGTCACTAAATAATAAACTACTATTAGCATTAAAGGACAAC  800

seq1  GTATTATGTATGCCAGTAAGTCTTATGGTAATTCAC-TTACAATGTAGAG  848
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTATTATGTATGCCAGTAAGTCTTATGGTAATTCACTTTACAATGTAGAG  850

seq1  AAATGCACAGTAGGCAAAGGGGACAGTAGATCAGTAAACACTTTAAACCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACAGTAGGCAAAGGGGACAGTAGATCAGTAAACACTTTAAACCT  900

seq1  ACTGTTGGGCAGAGGCACAAACATATATGTATAAAAACAGTAGAATTCAA  948
      |||||||||||||||||||||||||||||||| |||||||||| |||| |
seq2  ACTGTTGGGCAGAGGCACAAACATATATGTAT-AAAACAGTAG-ATTC-A  947

seq1  CTTGAGACAATACAATGAAAGCATTGTCTCAAGTCTCTTGACTATGTACT  998
      |||||||| |||| |||||||||||||||||||| |||||||||||||||
seq2  CTTGAGAC-ATAC-ATGAAAGCATTGTCTCAAGT-TCTTGACTATGTACT  994

seq1  GACCATTTATGAGCCAAATGAGACCTTTTGAAGAAAAAAATAAAATAACA  1048
      ||||| ||||||||||||||| ||| |||||||  |||||| |||||   
seq2  GACCA-TTATGAGCCAAATGA-ACC-TTTGAAG--AAAAATTAAATA--C  1037

seq1  AAACTACGCAGAGGTTGCTTTCTCCACACAAGAGCAAG-CCTCTTCTTCT  1097
      |||||||| ||| ||||| ||||||||||| ||||||| |||||||||||
seq2  AAACTACG-AGAAGTTGC-TTCTCCACACAGGAGCAAGCCCTCTTCTTCT  1085

seq1  AGCTCCATTCATTTAAATGGTTTTAAGTGAACCCCACTG  1136
      ||||||| |||||  ||||||||| |||| | |||||||
seq2  AGCTCCA-TCATT--AATGGTTTT-AGTGGAACCCACTG  1120

seq1: chr10_105013660_105013808
seq2: B6Ng01-053J18.g_76_224 (reverse)

seq1  CACACACACACATACACACCCCTCTTTCCCATCATCCTTTATCACTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATACACACCCCTCTTTCCCATCATCCTTTATCACTTCCT  50

seq1  TCTAAGTATCTTTGTCTGCTTGTTTGTTTGTTTGTTTGTTTGTGGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTATCTTTGTCTGCTTGTTTGTTTGTTTGTTTGTTTGTGGAGTTT  100

seq1  TGATTTTTTTTTTGAGACAAGGTTACTCTGTGTAGCTCTGACTGTCATT  149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTTTTGAGACAAGGTTACTCTGTGTAGCTCTGACTGTCATT  149