BAC Information

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BAC

Clone NameB6Ng01-054C02
Chromosome10 (Build37)
Map Location 85,734,840 - 85,876,867
singlet/doubletdoublet
Overlap geneSyn3, Timp3
Upstream geneEG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7
Downstream geneEG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054C02.bB6Ng01-054C02.g
ACCDH876966DH876967
length1,1871,117
definitionDH876966|Mus musculus domesticus DNA, BAC clone: B6Ng01-054C02, 5' end.DH876967|Mus musculus domesticus DNA, BAC clone: B6Ng01-054C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,734,840 - 85,736,039)(85,875,751 - 85,876,867)
sequence
gaattcatttaaccttcacaagagaacatcttaactggaatattgcctcc
agcagattggctttttggcatgtctgtggggcattttcttgattgctaat
tgatgtgggaggaccctgcccaccacgggtggtgtcatcccttcctaggc
aggtaagcctgatctgtatgaaaaaggctgaatgtgaaccaggaagtaag
aaccagcaaacatcatttcttccttggtttctgctccagaccatgagtcc
ctgctctgacttccttccacgcacagacaaataagttgtttcttttcttc
ctttaagttgtttatgttatgatgactttcacagtaacaaaaagcaaacg
agggcattcccatttactgacttggaaactgaggcagagccaggcttcaa
atccagatagtctgtctacatgactcgtatgtatgtagcattggggactc
agagtactccagagattattggcagtgatctgaactgtaatagatccaca
ggaagccaatgggaagttttagggtctttactaccttgggtaaagaaagt
tcagatctaaaaatgaggacaagaaagttgacatagatgatcaatgaata
gagagaaatagcaggcgatgaataagcatctttggaagtaggacaaagca
tggagacagaggaacagtactgatgtccatacaggggtctgggtgcctct
aaaactggagggagaagctgcagttgctaatcagctttcctgaagaacta
gcagagagggggatccagcatggaacaggaattctgcttctctgtaacag
gtcctctgacgagaactggacacgtacagttaatagctcttggacatccc
tcttatttcttcctttgcaaagaagcaaagaaatctctgaggaaaccagc
ttgggtggggtcagagggcagctcccaatagccaaatgctacaggtttct
taagaactggataggaaatggcaaaaggtagcctagttgcctaaataaat
ctgcttctaagtcagagatgagcttgcatccgggcttagggtctaaattg
atatccactgaaatactcccagaggacagtcaccatacagctctacatct
ggtgtgctactattgatgctgtctttcatctgtaacctcaagatcaatga
gatctgaatagaagtcctcaggtgctgtgcaatggtg
gaattccaacagttctgaacattttccaaagtaacttactaggaggggct
ggaggattggctcagcaaatatgaatgcttgcattcaggggccagcatac
atgttcacaaccttttgtaacttcaatttcaggggatttttttaaacctc
ttcaggcaccggcatagaagtgaacaaacacacccagagagagacataaa
agtcaataataaaataaactttaagaaaataaaggagggactgaaaagat
ggctcaaaggttaagagcactagctgcttttcaattcccagtacccacat
ggcagctcacaactgtctgcaacttcagttccaggggatgcaacacccac
atacagacatacatgcaagtaaaatacaaacccacattttaaaaaataaa
aagaaatcatcagaaaagaaggaagaaaggaagagaaggtgaaagtggag
gagaaggagaagaaggagaaggaggagaaggagaaggagaagaaaacaga
gagagaaagaaaggaggggaggagacaaactcttttatgtgcccttggta
gcaaatagtagataaaaagtaccttagttcatctcaagaacatgggctta
tactccaggaaggtagaaagacagctaagatgatgatttttttttgaagc
tctgcggaaactcgaagcttcatgtataaaaccaagagatttcttccagg
gtgtgtgagcatggtagtggtggaagatacactcaatggtcctcagtaaa
gaggatgacttggtaatggaaagactcattccctcacttagtcacctccc
ctaactttagaaacaacattccgttgctaaggattgattgaacatagctg
atgctgatgagcagttcttaacatttcattggatctttgagagggctcac
tgcaataatgggcagataccaagaagagcatagtacaacatgcagtggtc
agtcactatttctattgggaagcatctaactagtttgctcaggacagaag
ctttgatgtcagctggtggcctggtgtcatgtatattgaagtggcaagta
acactaactctgtctgtccattgataggaacagaaatggctccaccctat
tatctttggtattttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_85734840_85736039
seq2: B6Ng01-054C02.b_44_1230

seq1  GAATTCATTTAACCTTCACAAGAGAACATCTTAACTGGAATATTGCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAACCTTCACAAGAGAACATCTTAACTGGAATATTGCCTCC  50

seq1  AGCAGATTGGCTTTTTGGCATGTCTGTGGGGCATTTTCTTGATTGCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTGGCTTTTTGGCATGTCTGTGGGGCATTTTCTTGATTGCTAAT  100

seq1  TGATGTGGGAGGACCCTGCCCACCACGGGTGGTGTCATCCCTTCCTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGGGAGGACCCTGCCCACCACGGGTGGTGTCATCCCTTCCTAGGC  150

seq1  AGGTAAGCCTGATCTGTATGAAAAAGGCTGAATGTGAACCAGGAAGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCCTGATCTGTATGAAAAAGGCTGAATGTGAACCAGGAAGTAAG  200

seq1  AACCAGCAAACATCATTTCTTCCTTGGTTTCTGCTCCAGACCATGAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCAAACATCATTTCTTCCTTGGTTTCTGCTCCAGACCATGAGTCC  250

seq1  CTGCTCTGACTTCCTTCCACGCACAGACAAATAAGTTGTTTCTTTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGACTTCCTTCCACGCACAGACAAATAAGTTGTTTCTTTTCTTC  300

seq1  CTTTAAGTTGTTTATGTTATGATGACTTTCACAGTAACAAAAAGCAAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTTGTTTATGTTATGATGACTTTCACAGTAACAAAAAGCAAACG  350

seq1  AGGGCATTCCCATTTACTGACTTGGAAACTGAGGCAGAGCCAGGCTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTCCCATTTACTGACTTGGAAACTGAGGCAGAGCCAGGCTTCAA  400

seq1  ATCCAGATAGTCTGTCTACATGACTCGTATGTATGTAGCATTGGGGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATAGTCTGTCTACATGACTCGTATGTATGTAGCATTGGGGACTC  450

seq1  AGAGTACTCCAGAGATTATTGGCAGTGATCTGAACTGTAATAGATCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTCCAGAGATTATTGGCAGTGATCTGAACTGTAATAGATCCACA  500

seq1  GGAAGCCAATGGGAAGTTTTAGGGTCTTTACTACCTTGGGTAAAGAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAATGGGAAGTTTTAGGGTCTTTACTACCTTGGGTAAAGAAAGT  550

seq1  TCAGATCTAAAAATGAGGACAAGAAAGTTGACATAGATGATCAATGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTAAAAATGAGGACAAGAAAGTTGACATAGATGATCAATGAATA  600

seq1  GAGAGAAATAGCAGGCGATGAATAAGCATCTTTGGAAGTAGGACAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATAGCAGGCGATGAATAAGCATCTTTGGAAGTAGGACAAAGCA  650

seq1  TGGAGACAGAGGAACAGTACTGATGTCCATACAGGGGTCTGGGTGCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGAGGAACAGTACTGATGTCCATACAGGGGTCTGGGTGCCTCT  700

seq1  AAAACTGGAGGGAGAAGCTGCAGTTGCTAATCAGCTTTCCTGAAGAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAGGGAGAAGCTGCAGTTGCTAATCAGCTTTCCTGAAGAACTA  750

seq1  GCAGAGAGGGGGATCCAGCATGGAACAGGAATTCTGCTTCTCTGTAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGGGGGATCCAGCATGGAACAGGAATTCTGCTTCTCTGTAACAG  800

seq1  GTCCTCTGACGAGAACTGGACACGTACAGTTAATAGCTCTTGGACATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGACGAGAACTGGACACGTACAGTTAATAGCTCTTGGACATCCC  850

seq1  TCTTATTTCTTCCTTTGCAAAGAAGCAAAGAAATCTCTGAGGAAACCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTCTTCCTTTGCAAAGAAGCAAAGAAATCTCTGAGGAAACCAGC  900

seq1  TTGGGTGGGGTCAGAGGGCAGCTCCCAATAGCCAAATGCTACAGGTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGGGTCAGAGGGCAGCTCCCAATAGCCAAATGCTACAGGTTTCT  950

seq1  TAAGAACTGGATAGGAAAATGGCAAAAGGTAGCCTAGTGGCCTAAAATAA  1000
      ||||||||||||||| |||||||||||||||||||||| |||| ||||||
seq2  TAAGAACTGGATAGG-AAATGGCAAAAGGTAGCCTAGTTGCCT-AAATAA  998

seq1  ATCTGGCTCTAAGTCAAGAGGATGAGCTTGCATCCGGGCTTAGGGTCTAA  1050
      |||||  |||||||| ||| ||||||||||||||||||||||||||||||
seq2  ATCTGCTTCTAAGTC-AGA-GATGAGCTTGCATCCGGGCTTAGGGTCTAA  1046

seq1  ATTGATATCCACTGAAATACTCCCAAGAGGGACAGTCACCATACAGCTCT  1100
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  ATTGATATCCACTGAAATACTCCC-AGA-GGACAGTCACCATACAGCTCT  1094

seq1  ACATCCTGGTGTTGCTACTATGGAATTGCTGTC-TTCATCTGTAAAACTC  1149
      |||| |||||| ||||||||| ||  ||||||| ||||||||| || |||
seq2  ACAT-CTGGTG-TGCTACTATTGA--TGCTGTCTTTCATCTGT-AACCTC  1139

seq1  AGAGATCCATGAGGATCTGAATAGAGATGCTCAGGTGCTGTGCAAATGGT  1199
      | ||||| |||| ||||||||||||  | |||||||||||||| ||||||
seq2  A-AGATCAATGA-GATCTGAATAGAAGTCCTCAGGTGCTGTGC-AATGGT  1186

seq1  G  1200
      |
seq2  G  1187

seq1: chr10_85875751_85876867
seq2: B6Ng01-054C02.g_67_1183 (reverse)

seq1  AGAAAATA-CAAAGATAATTTAGGGT-GAGC--ATTCTG-TCCTTTCAAT  45
      |||||||| |||||||||  |||||| ||||   ||||| |||| |||||
seq2  AGAAAATACCAAAGATAA--TAGGGTGGAGCCATTTCTGTTCCTATCAAT  48

seq1  GGACAGACAAGATGTAGTGTTACTTGCCCACTCTATAATACATAGACACC  95
      |||||||| |||  |||||||||||| |||||  |  |||||| ||||||
seq2  GGACAGAC-AGAGTTAGTGTTACTTG-CCACTTCAATATACAT-GACACC  95

seq1  AGGCCACCAGCTGACATCAAAGCTTCTGTCCTGAGCAAACTAGTTAGATG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACCAGCTGACATCAAAGCTTCTGTCCTGAGCAAACTAGTTAGATG  145

seq1  CTTCCCAATAGAAATAGTGACTGGCCACTGCATGTTGTACTATGCTCTTC  195
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTCCCAATAGAAATAGTGACTGACCACTGCATGTTGTACTATGCTCTTC  195

seq1  TTGGTATCTGCCCATTATTGCAGTGAGCCCTCTCAAAGATCCAATG-AAT  244
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGGTATCTGCCCATTATTGCAGTGAGCCCTCTCAAAGATCCAATGAAAT  245

seq1  GTTAAGAACTGCTCATCAGCATCAGCTATGTTCAATCAATCCTTAGCAAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAACTGCTCATCAGCATCAGCTATGTTCAATCAATCCTTAGCAAC  295

seq1  GGAATGTTGTTTCTAAAGGTTAGGGGAGGTGACTAAGTGAGGGAATGAGT  344
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAATGTTGTTTCTAAA-GTTAGGGGAGGTGACTAAGTGAGGGAATGAGT  344

seq1  CTTTCCATTACCAAGTCATCCTCTTTACTGAGGACCATTGAGTGTATCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTACCAAGTCATCCTCTTTACTGAGGACCATTGAGTGTATCTT  394

seq1  CCACCACTACCATGCTCACACACCCTGGAAGAAATCTCTTGGTTTTATAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTACCATGCTCACACACCCTGGAAGAAATCTCTTGGTTTTATAC  444

seq1  ATGAAGCTTCGAGTTTCCGCAGAGCTTCAAAAAAAAATCATCATCTTAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTTCGAGTTTCCGCAGAGCTTCAAAAAAAAATCATCATCTTAGC  494

seq1  TGTCTTTCTACCTTCCTGGAGTATAAGCCCATGTTCTTGAGATGAACTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTACCTTCCTGGAGTATAAGCCCATGTTCTTGAGATGAACTAA  544

seq1  GGTACTTTTTATCTACTATTTGCTACCAAGGGCACATAAAAGAGTTTGTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTTTTATCTACTATTTGCTACCAAGGGCACATAAAAGAGTTTGTC  594

seq1  TCCTCCCCTCCTTTCTTTCTCTCTCTGTTTTCTTCTCCTTCTCCTTCTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCTCCTTTCTTTCTCTCTCTGTTTTCTTCTCCTTCTCCTTCTCC  644

seq1  TCCTTCTCCTTCTTCTCCTTCTCCTCCACTTTCACCTTCTCTTCCTTTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCTTCTTCTCCTTCTCCTCCACTTTCACCTTCTCTTCCTTTCT  694

seq1  TCCTTCTTTTCTGATGATTTCTTTTTATTTTTTAAAATGTGGGTTTGTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTTCTGATGATTTCTTTTTATTTTTTAAAATGTGGGTTTGTAT  744

seq1  TTTACTTGCATGTATGTCTGTATGTGGGTGTTGCATCCCCTGGAACTGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTGCATGTATGTCTGTATGTGGGTGTTGCATCCCCTGGAACTGAA  794

seq1  GTTGCAGACAGTTGTGAGCTGCCATGTGGGTACTGGGAATTGAAAAGCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGACAGTTGTGAGCTGCCATGTGGGTACTGGGAATTGAAAAGCAG  844

seq1  CTAGTGCTCTTAACCTTTGAGCCATCTTTTCAGTCCCTCCTTTATTTTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTCTTAACCTTTGAGCCATCTTTTCAGTCCCTCCTTTATTTTCT  894

seq1  TAAAGTTTATTTTATTATTGACTTTTATGTCTCTCTCTGGGTGTGTTTGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTATTTTATTATTGACTTTTATGTCTCTCTCTGGGTGTGTTTGT  944

seq1  TCACTTCTATGCCGGTGCCTGAAGAGGTTTAAAAAAATCCCCTGAAATTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTATGCCGGTGCCTGAAGAGGTTTAAAAAAATCCCCTGAAATTG  994

seq1  AAGTTACAAAAGGTTGTGAACATGTATGCTGGCCCCTGAATGCAAGCATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAAAAGGTTGTGAACATGTATGCTGGCCCCTGAATGCAAGCATT  1044

seq1  CATATTTGCTGAGCCAATCCTCCAGCCCCTCCTAGTAAGTTACTTTGGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGCTGAGCCAATCCTCCAGCCCCTCCTAGTAAGTTACTTTGGAA  1094

seq1  AATGTTCAGAACTGTTGGAATTC  1117
      |||||||||||||||||||||||
seq2  AATGTTCAGAACTGTTGGAATTC  1117