BAC Information

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BAC

Clone NameB6Ng01-054D16
Chromosome10 (Build37)
Map Location 117,076,655 - 117,218,308
singlet/doubletdoublet
Overlap geneCpm, Mdm2, Slc35e3, Nup107
Upstream geneEG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c
Downstream geneRap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054D16.bB6Ng01-054D16.g
ACCDH877034DH877035
length5921,093
definitionDH877034|Mus musculus domesticus DNA, BAC clone: B6Ng01-054D16, 5' end.DH877035|Mus musculus domesticus DNA, BAC clone: B6Ng01-054D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,076,655 - 117,077,251)(117,217,206 - 117,218,308)
sequence
aaagcaggctccatccacatagtgagttccaggccagcctgggctacatg
gtgagtccctacctcaagcccaaacaaaacaagcctctgatttaaacagc
ttacttaatcttcaagtcctcagcagatcttcagctgggcttcggagggg
gtttatgtaaatggcactcaggagaagtttggctgtgaaaatgaactcgg
tgatcatctactgccgatatcagcagccctgagaagagcgaaactaccct
acaagagactgaggaccgagaaaaggctagaacagagctgaaggctagcc
caacgcttatagtctggtagagccaggagccagcaaaggaggggaaatga
aatcaggatggagaccgtggggggcggggaggggggaagggaacggaccc
taagagtcgtgccacaggacggtggaggcacccaaggtcacgtgactgcc
accaccagggatttttaaacaggacgcatgaggtacccagggtcacggga
cttccaccggggattttctggaaggactgtgttaagttcaaactaagctc
ctcccctaggctgagcgtgcaacaagggcccggtgcagaagc
gaattcagtgttaatgaggggtagcctcagcataggtttgctgatcttgg
gatttatcattcctaatacttgaggtgtggagagtatgttatgaggaaga
ggggccatcaggtcataaaactgggagctacaaacttaccagtccatagc
cagacaaagcacaacacccgtgtgatcccaggaggcctaggcgagcctgg
gctccagaaagtaagggaagaaagagacctggtggtttggggttttatta
tgcaatactgaaagatttgcttaattatgctatatgaaaaggtacgttcc
tttgggggtgccttcaggctacagtagtggttgccctttgtgctcgggtc
ttggtactggagtgatgatgtagttactgcttacttccttcattaaaggt
gatgatggagcccactgcatctcattggtttctacgccgtcacaccacag
agtgtgggacagcttaccaggtggcttcatgcatttgtgtaaagtaaagc
tttttcatttgtgttcttttccccagagacagaatacagtcttcattaga
agaggaaaatatgtttgcaattgctgtaagttttctatgaattttttccg
tcacaggttttttccattacgctttacagatttgatttttcaaccctcca
tttgcatttccccattaaaaaagatttacaagtacagagatgatgttcaa
agtaatcaaatgtttatagttatgggtaaaagttctttttatccctcaaa
ttatttaacgtaataacttggattaacatcctatcagatgttttctgtgt
atttttatacatacacacataatcaaattactcttgagtcatttgttctg
tttttcttttcccttttttgagacagggtgtggtttttgtagtccagatg
ggcctcaagtcacacccttctgtctcccatcttgagtgctgagattatag
atatacgccatcacacacacatctatatggttttattttattatttacta
tgggcattttctgagaagtcctctgaagtataaactggcctttggagata
aactggcctagactgtctgtcggtcaaactgcccggatatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_117076655_117077251
seq2: B6Ng01-054D16.b_45_642

seq1  GAATTCAAAGCAGGCTCCATCCACATAGTGAGTTCCAGGCCAGCCTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCAGGCTCCATCCACATAGTGAGTTCCAGGCCAGCCTGGGC  50

seq1  TACATGGTGAGTCCCTACCTCAAGCCCAAACAAAACAAGCCTCTGATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTGAGTCCCTACCTCAAGCCCAAACAAAACAAGCCTCTGATTTA  100

seq1  AACAGCTTACTTAATCTTCAAGTCCTCAGCAGATCTTCAGCTGGGCTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTACTTAATCTTCAAGTCCTCAGCAGATCTTCAGCTGGGCTTCG  150

seq1  GAGGGGGTTTATGTAAATGGCACTCAGGAGAAGTTTGGCTGTGAAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTTTATGTAAATGGCACTCAGGAGAAGTTTGGCTGTGAAAATGA  200

seq1  ACTCGGTGATCATCTACTGCCGATATCAGCAGCCCTGAGAAGAGCGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGTGATCATCTACTGCCGATATCAGCAGCCCTGAGAAGAGCGAAAC  250

seq1  TACCCTACAAGAGACTGAGGACCGAGAAAAGGCTAGAACAGAGCTGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTACAAGAGACTGAGGACCGAGAAAAGGCTAGAACAGAGCTGAAGG  300

seq1  CTAGCCCAACGCTTATAGTCTGGTAGAGCCAGGAGCCAGCAAAGGAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCAACGCTTATAGTCTGGTAGAGCCAGGAGCCAGCAAAGGAGGGG  350

seq1  AAATGAAATCAGGATGGAGACCGTGGGGGGCGGGGAGGGGGGAAGGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATCAGGATGGAGACCGTGGGGGGCGGGGAGGGGGGAAGGGAAC  400

seq1  GGACCCTAAGAGTCGTGCCACAGGACGGTGGAGGCACCCAAGGTCACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTAAGAGTCGTGCCACAGGACGGTGGAGGCACCCAAGGTCACGTG  450

seq1  ACTGCCACCACCAGGGATTTTTAAACAGGACGCAGGAGGTACCCAGGGTC  500
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTGCCACCACCAGGGATTTTTAAACAGGACGCATGAGGTACCCAGGGTC  500

seq1  ACGGGACTTCCACCGGGGATTTTCTGGAAGGACTGTGTTAAG-TCAAACT  549
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACGGGACTTCCACCGGGGATTTTCTGGAAGGACTGTGTTAAGTTCAAACT  550

seq1  AAGCTCCTCCCCGAGGCTGAGCGTGCAGCAAGGGCCCGGCGCAGAAGC  597
      |||||||||||| |||||||||||||| ||||||||||| ||||||||
seq2  AAGCTCCTCCCCTAGGCTGAGCGTGCAACAAGGGCCCGGTGCAGAAGC  598

seq1: chr10_117217206_117218308
seq2: B6Ng01-054D16.g_67_1159 (reverse)

seq1  CTCATAATCCCGGCAGTTCTGACCCGACAGACAGGTCTAGGCCAGTTTAT  50
      ||||| |||| ||||||| ||| |||||||||| ||||||||||||||||
seq2  CTCAT-ATCCGGGCAGTT-TGA-CCGACAGACA-GTCTAGGCCAGTTTAT  46

seq1  ACTTCAGAGGCCAGTTTATACTTCAGGAGAC-TCTCAGAAAATGCCCAAT  99
       || || |||||||||||||||||||  ||| ||||||||||||||| ||
seq2  -CTCCAAAGGCCAGTTTATACTTCAGAGGACTTCTCAGAAAATGCCC-AT  94

seq1  AGTAAATAAATAAATAAAACCAATATAAGATGTGTGGTGTGATGGCGTAT  149
      |||||||||  |||||||||| |||| |||||||| ||||||||||||||
seq2  AGTAAATAATAAAATAAAACC-ATAT-AGATGTGT-GTGTGATGGCGTAT  141

seq1  ATCTATAATCTCAGCACTCAAGATGGGGAGACAGAAGGGTGGTGACTTTG  199
      |||||||||||||||||||||||| ||||||||||||||| ||||| |||
seq2  ATCTATAATCTCAGCACTCAAGAT-GGGAGACAGAAGGGT-GTGAC-TTG  188

seq1  AGG-CCATCTGGACTACAAAAACCACACCCTGTCTCAAAAAAGGGAAAAG  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATCTGGACTACAAAAACCACACCCTGTCTCAAAAAAGGGAAAAG  238

seq1  AAAAACAGAACAAATGACTCAAGAGTAATTTGATTATGTGTGTATGTATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGAACAAATGACTCAAGAGTAATTTGATTATGTGTGTATGTATA  288

seq1  AAAATACACAGAAAACATCTGATAGGATGTTAATCCAAGTTATTACGTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACACAGAAAACATCTGATAGGATGTTAATCCAAGTTATTACGTTA  338

seq1  AATAATTTGAGGGATAAAAAGAACTTTTACCCATAACTATAAACATTTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTGAGGGATAAAAAGAACTTTTACCCATAACTATAAACATTTGA  388

seq1  TTACTTTGAACATCATCTCTGTACTTGTAAATCTTTTTTAATGGGGAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGAACATCATCTCTGTACTTGTAAATCTTTTTTAATGGGGAAAT  438

seq1  GCAAATGGAGGGTTGAAAAATCAAATCTGTAAAGCGTAATGGAAAAAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGGAGGGTTGAAAAATCAAATCTGTAAAGCGTAATGGAAAAAACC  488

seq1  TGTGACGGAAAAAATTCATAGAAAACTTACAGCAATTGCAAACATATTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACGGAAAAAATTCATAGAAAACTTACAGCAATTGCAAACATATTTT  538

seq1  CCTCTTCTAATGAAGACTGTATTCTGTCTCTGGGGAAAAGAACACAAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTAATGAAGACTGTATTCTGTCTCTGGGGAAAAGAACACAAATG  588

seq1  AAAAAGCTTTACTTTACACAAATGCATGAAGCCACCTGGTAAGCTGTCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTTTACTTTACACAAATGCATGAAGCCACCTGGTAAGCTGTCCC  638

seq1  ACACTCTGTGGTGTGACGGCGTAGAAACCAATGAGATGCAGTGGGCTCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGTGGTGTGACGGCGTAGAAACCAATGAGATGCAGTGGGCTCCA  688

seq1  TCATCACCTTTAATGAAGGAAGTAAGCAGTAACTACATCATCACTCCAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCTTTAATGAAGGAAGTAAGCAGTAACTACATCATCACTCCAGT  738

seq1  ACCAAGACCCGAGCACAAAGGGCAACCACTACTGTAGCCTGAAGGCACCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACCCGAGCACAAAGGGCAACCACTACTGTAGCCTGAAGGCACCC  788

seq1  CCAAAGGAACGTACCTTTTCATATAGCATAATTAAGCAAATCTTTCAGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGAACGTACCTTTTCATATAGCATAATTAAGCAAATCTTTCAGTA  838

seq1  TTGCATAATAAAACCCCAAACCACCAGGTCTCTTTCTTCCCTTACTTTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAATAAAACCCCAAACCACCAGGTCTCTTTCTTCCCTTACTTTCT  888

seq1  GGAGCCCAGGCTCGCCTAGGCCTCCTGGGATCACACGGGTGTTGTGCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGGCTCGCCTAGGCCTCCTGGGATCACACGGGTGTTGTGCTTT  938

seq1  GTCTGGCTATGGACTGGTAAGTTTGTAGCTCCCAGTTTTATGACCTGATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCTATGGACTGGTAAGTTTGTAGCTCCCAGTTTTATGACCTGATG  988

seq1  GCCCCTCTTCCTCATAACATACTCTCCACACCTCAAGTATTAGGAATGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTTCCTCATAACATACTCTCCACACCTCAAGTATTAGGAATGAT  1038

seq1  AAATCCCAAGATCAGCAAACCTATGCTGAGGCTACCCCTCATTAACACTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAAGATCAGCAAACCTATGCTGAGGCTACCCCTCATTAACACTG  1088

seq1  AATTC  1103
      |||||
seq2  AATTC  1093