BAC Information

Click to search

BAC

Clone NameB6Ng01-054N15
Chromosome10 (Build37)
Map Location 35,091,189 - 35,202,181
singlet/doubletdoublet
Overlap genenone
Upstream geneNt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585, LOC667860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054N15.bB6Ng01-054N15.g
ACCDH877482DH877483
length1,140135
definitionDH877482|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N15, 5' end.DH877483|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,201,019 - 35,202,181)(35,091,189 - 35,091,328)
sequence
gaattcattactcccatgacaggtaaggatgtggcacagatgggggcaac
ctaagacagatgttgatcccagagctactgataaaacaaaacgggggaga
ttcgggaagcaggtgcaggcacaggccccgtgaaacccatttgtttactg
ccttgcccaagcatgcacagtgaggctgcatgcatgggctgcctgccagg
ctggactgttcttcatgatctggacctgtcagcctatcagtgaccaacct
gagcttgtgcctggagcatgagtgaattctgattggatgaggtggagtgg
agcagaaggaggtcagtcagtgcaaaaataggagtttttggttgttaccc
ttgctgaagtggagagagctgtaagaaaaaagatgacaagtaaaaggaga
agctgtatcgtgaacctgacttggtgtccgtgtagttcttgtgtctctgc
gggaagaaaagactgtggcaatcctgcttcttagagcaataactacagat
aaatttgaaaagattagtacattgagatgattacttaataactctgacac
ttcattcctgatgatgcctgcagcagtgagaattcaagatatctccacgt
caatgtgccaattttcattaaaaagctattataccccagagattctaaac
attcactatttctctttgagaggagactatgaacaaatcttaaaatccat
ttgctgtaattttggtggatactttaaggtattacttattgctttagtac
tcaaaaaatattaggcatgtaaagaaaacacaaaattacttggatataaa
taataaaatgactcattcccaagagggaagattattcacgaacttattca
tattgaccagatatatatatatacatatatatgaattgattcattataaa
atatttgatatatatatacatacatacatatataaatgaattgattcata
taaaatatttgatatatatatatatatatatatatataaaatgaccagta
atcaactagtattcagattctagatagcttaaataactgatagctcaata
aaagtagttaatattgtgaactttttgaacttattgccgcagagttgtct
gctaaggcgagctgagtatataaagtgcatgatagaaatt
ttcactttggaagtctccacttggataatgttatcttcattgatttctga
gaaatttattattcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgagagtgcgtgttgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_35201019_35202181
seq2: B6Ng01-054N15.b_48_1187 (reverse)

seq1  AATTATCTATCATGCCACTTTATAATAACCTCAGCTCGCCTCTAGCCAGA  50
      |||| ||||||||| |||||||| |||  |||||||||||| ||| ||||
seq2  AATT-TCTATCATG-CACTTTAT-ATA--CTCAGCTCGCCT-TAG-CAGA  43

seq1  CAACTTCTGCGCTATTAAAAGTTTCAAAAAGTTCACCAATAATTTAAACC  100
      |||| ||||||  | |||    ||||||||||||| |||||  ||||  |
seq2  CAAC-TCTGCGGCAATAA---GTTCAAAAAGTTCA-CAATA--TTAA--C  84

seq1  TAACTTTTATTGAGCTATCAGTTATTTTAAGGCTATCTTAGAATTCTGAA  150
      | |||||||||||||||||||||||||  | |||||| ||||| ||||||
seq2  T-ACTTTTATTGAGCTATCAGTTATTT--AAGCTATC-TAGAA-TCTGAA  129

seq1  TACCTAGTTGATTACTGGTCATTTTATATATATATATATATATATATATA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-CTAGTTGATTACTGGTCATTTTATATATATATATATATATATATATA  178

seq1  TCAAATATTTTATAATGAATCAATTCATTTATATATGTATGTATGTATAT  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTTTAT-ATGAATCAATTCATTTATATATGTATGTATGTATAT  227

seq1  ATATATCAAATATTTTATAATGAATCAATTCATATATATGTATATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCAAATATTTTATAATGAATCAATTCATATATATGTATATATATA  277

seq1  TATCTGGTCAATATGAATAAGTTCCTGAATAATCTTCCCTCTTGGGAATG  350
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATCTGGTCAATATGAATAAGTTCGTGAATAATCTTCCCTCTTGGGAATG  327

seq1  AGTCATTTTATTATTTATATCCAAGTAATTTTGTGTTTTCTTTACATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTTATTATTTATATCCAAGTAATTTTGTGTTTTCTTTACATGCC  377

seq1  TAATATTTTTTGAGTACTAAAGCAATAAGTAATACCTTAAAGTATCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTTTGAGTACTAAAGCAATAAGTAATACCTTAAAGTATCCACC  427

seq1  AAAATTACAGCAAATGGATTTTAAGATTTGTTCATAGTCTCCTCTCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAGCAAATGGATTTTAAGATTTGTTCATAGTCTCCTCTCAAAG  477

seq1  AGAAATAGTGAATGTTTAGAATCTCTGGGGTATAATAGCTTTTTAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGTGAATGTTTAGAATCTCTGGGGTATAATAGCTTTTTAATGAA  527

seq1  AATTGGCACATTGACGTGGAGATATCTTGAATTCTCACTGCTGCAGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCACATTGACGTGGAGATATCTTGAATTCTCACTGCTGCAGGCAT  577

seq1  CATCAGGAATGAAGTGTCAGAGTTATTAAGTAATCATCTCAATGTACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGAATGAAGTGTCAGAGTTATTAAGTAATCATCTCAATGTACTAA  627

seq1  TCTTTTCAAATTTATCTGTAGTTATTGCTCTAAGAAGCAGGATTGCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAAATTTATCTGTAGTTATTGCTCTAAGAAGCAGGATTGCCACA  677

seq1  GTCTTTTCTTCCCGCAGAGACACAAGAACTACACGGACACCAAGTCAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTTCCCGCAGAGACACAAGAACTACACGGACACCAAGTCAGGT  727

seq1  TCACGATACAGCTTCTCCTTTTACTTGTCATCTTTTTTCTTACAGCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGATACAGCTTCTCCTTTTACTTGTCATCTTTTTTCTTACAGCTCTC  777

seq1  TCCACTTCAGCAAGGGTAACAACCAAAAACTCCTATTTTTGCACTGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCAGCAAGGGTAACAACCAAAAACTCCTATTTTTGCACTGACTG  827

seq1  ACCTCCTTCTGCTCCACTCCACCTCATCCAATCAGAATTCACTCATGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTCTGCTCCACTCCACCTCATCCAATCAGAATTCACTCATGCTC  877

seq1  CAGGCACAAGCTCAGGTTGGTCACTGATAGGCTGACAGGTCCAGATCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACAAGCTCAGGTTGGTCACTGATAGGCTGACAGGTCCAGATCATG  927

seq1  AAGAACAGTCCAGCCTGGCAGGCAGCCCATGCATGCAGCCTCACTGTGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGTCCAGCCTGGCAGGCAGCCCATGCATGCAGCCTCACTGTGCA  977

seq1  TGCTTGGGCAAGGCAGTAAACAAATGGGTTTCACGGGGCCTGTGCCTGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGCAAGGCAGTAAACAAATGGGTTTCACGGGGCCTGTGCCTGCA  1027

seq1  CCTGCTTCCCGAATCTCCCCCGTTTTGTTTTATCAGTAGCTCTGGGATCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCCCGAATCTCCCCCGTTTTGTTTTATCAGTAGCTCTGGGATCA  1077

seq1  ACATCTGTCTTAGGTTGCCCCCATCTGTGCCACATCCTTACCTGTCATGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTCTTAGGTTGCCCCCATCTGTGCCACATCCTTACCTGTCATGG  1127

seq1  GAGTAATGAATTC  1163
      |||||||||||||
seq2  GAGTAATGAATTC  1140

seq1: chr10_35091189_35091328
seq2: B6Ng01-054N15.g_73_207

seq1  TTCACTTTGGAAGTCTCCACTTGGATAATGTTATCTTCATTGATTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTGGAAGTCTCCACTTGGATAATGTTATCTTCATTGATTTCTGA  50

seq1  GAAATTTATTATTCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTATTATTCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  100

seq1  GTGTGTGTGTGTGTGTGCATGTGTGCGTGTATGTGTGTGT  140
      |||||||||||||||     | |||||||| |||||||||
seq2  GTGTGTGTGTGTGTG----AGAGTGCGTGT-TGTGTGTGT  135