BAC Information

Click to search

BAC

Clone NameB6Ng01-054O09
Chromosome10 (Build37)
Map Location 49,671,865 - 49,672,890
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik2
Downstream geneLOC629652, Ascc3, Sim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054O09.bB6Ng01-054O09.g
ACCDH877514DH877515
length1,0161,221
definitionDH877514|Mus musculus domesticus DNA, BAC clone: B6Ng01-054O09, 5' end.DH877515|Mus musculus domesticus DNA, BAC clone: B6Ng01-054O09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagtaatctgcctcctgagtgctgggattaatgatatactact
gtatacaaaatcgaacttttatctatctatctatctatctatctatctat
ctatctatctatctatctacctatttatatttactttttttttaaattca
agacaggctgcaaatttgaaatttctctgcctctaccttctcaatgccag
ggggtcacagtgtgtgactatcattgcattggttattttcaaaatctcca
cttgatctgtcttggaattaacatagtattaatagtcaataaattttagg
attaacatggggctcacagagactgaaccatgaaccaaagaacatgacta
ggctggacttaggccccctacacatatgtagcaaatgtgcagcttgttct
tcatgtagttctactaacaattggagcaggagctttcactgacttggcct
gtgttgtttgcctttgtaacatttttgcccagctgggtttctttgtctgc
cctcactgggagaggatgtgcttagtgcagatgtgatttgatgtgccagg
gctggttggtactcatgtgacttgtgtgcatgtgtataattggggggggg
tcctcttctcctcagagggatgaaagaatggggtaaagaggatgggaagg
tgggaccagaggacatgacagatgtgggctgtgattgggatataaagtga
atacatatatacatacacacatatataaaattcatacctgaattaaaatc
tcatattcaatgcttaatttttctttttcttaacagtttaataaagttat
tatcagattaaaaattttagaacataaaatcatcccagcaaagtgggtga
aaaaatccttgtagaactgtatattttaaagccaagtaataattgaatcc
cttgcagactaacatatcactaacagcctgcacaacgtgaaagactaaag
cttttaattagacttttactcaatagggagaaaaataatttaaatgtatg
agggctaatgcggaat
gaattcttgctagggtggtttccactagtgatagaaaactaataagactt
gaaagatgtgagggtagcagagaatattgttctacaactaagggtagctt
gtcatgttgccttagaaactgtgaatttaaagttcttgatattgagattc
aacatgtgtcttctaaaatgcactaatattcagtctacagcttgcaaatg
tgtgcatgtgtatatgtttgtgtaattgacatcctgaaagtgtacagaat
atttttaacacttaggagattccttcatgtcacttgtcaatcatatccat
catccaacatcagatatatccatgatttagacttccagcatcttagatta
gcttgcttagttttgatactaattttcattgatagacacaactatatact
aatttgtgtgtcaattttcttacttagcatagtgtcagtaagacttatcc
aaagtgtcccacatggtggtatgttattctttttagctctagtctaacag
ttcattgggcgactatgctgtgctttttttaatctgtcataatcatggtg
ataaatatttgaattttcaccaggttttagtcttagtggataaagtttat
atgatcattttcatatgaatgtatccaagagaaatgtggaataatgttaa
tctaccttagtctaaaacctggaccttcctggagggtcccatataaactg
aatcctagttcttagagaggccgtcactgtgtaacaggtaggtcctgatc
taaccagatttccctcaagtctcgtgataaaattgaaagataagttcata
gcagccttatttataatagccagaagctggaaagaacccagatgcccctc
aacagaggaatggatacagaaaatgtggtacatctacacaatggagtact
actcagctattaaaagaatgaatttatgagattcctagccaatggatgga
cctggaggcatcatcctgagtgagtaacacattcacaaagactccacaat
atgtactcactgatagtgatattagcccaaaactagatacccagaattaa
gaatcatttctaaaccatgaaactcagaaattgaaactggatgttgacct
atgccctctgaggtgacaaaacccttgagattacagaacagtgaactgag
aagatgacagggagctcttaccggatcctacgatcacgtacatgctacat
cagatatctaaggacgaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49671865_49672890
seq2: B6Ng01-054O09.b_48_1063

seq1  GAATTCACAGTAATCTGCCTCCTGAGTGCTGGGATTAATGATATACTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTAATCTGCCTCCTGAGTGCTGGGATTAATGATATACTACT  50

seq1  GTATACAAAATCGAACTTTTATCTATCTATCTATCTATCTATCTATCTAT  100
      |||||||||||||||||||    |||||||||||||||||||||||||||
seq2  GTATACAAAATCGAACTTT----TATCTATCTATCTATCTATCTATCTAT  96

seq1  CTATCTATCTATCTATCTATCTACCTATTTATATTTACTTTTTTTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTACCTATTTATATTTACTTTTTTTTTAAA  146

seq1  TTCAAGACAGGCTGCAAATTTGAAATTTCTCTGCCTCTACCTTCTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACAGGCTGCAAATTTGAAATTTCTCTGCCTCTACCTTCTCAATG  196

seq1  CCAGGGGGTCACAGTGTGTGACTATCATTGCATTGGTTATTTTCAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGGTCACAGTGTGTGACTATCATTGCATTGGTTATTTTCAAAATC  246

seq1  TCCACTTGATCTGTCTTGGAATTAACATAGTATTAATAGTCAATAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGATCTGTCTTGGAATTAACATAGTATTAATAGTCAATAAATTT  296

seq1  TAGGATTAACATGGGGCTCACAGAGACTGAACCATGAACCAAAGAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTAACATGGGGCTCACAGAGACTGAACCATGAACCAAAGAACATG  346

seq1  ACTAGGCTGGACTTAGGCCCCCTACACATATGTAGCAAATGTGCAGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCTGGACTTAGGCCCCCTACACATATGTAGCAAATGTGCAGCTTG  396

seq1  TTCTTCATGTAGTTCTACTAACAATTGGAGCAGGAGCTTTCACTGACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATGTAGTTCTACTAACAATTGGAGCAGGAGCTTTCACTGACTTG  446

seq1  GCCTGTGTTGTTTGCCTTTGTAACATTTTTGCCCAGCTGGGTTTCTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTTGTTTGCCTTTGTAACATTTTTGCCCAGCTGGGTTTCTTTGT  496

seq1  CTGCCCTCACTGGGAGAGGATGTGCTTAGTGCAGATGTGATTTGATGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCACTGGGAGAGGATGTGCTTAGTGCAGATGTGATTTGATGTGC  546

seq1  CAGGGCTGGTTGGTACTCATGTGACTTGTGTGCATGTGTATAATTGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGGTTGGTACTCATGTGACTTGTGTGCATGTGTATAATTGGGGG  596

seq1  GGGGTCCTCTTCTCCTCAGAGGGATGAAAGAATGGGGTAAAGAGGATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCTCTTCTCCTCAGAGGGATGAAAGAATGGGGTAAAGAGGATGGG  646

seq1  AAGGTGGGACCAGAGGACATGACAGATGTGGGCTGTGATTGGGATATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGACCAGAGGACATGACAGATGTGGGCTGTGATTGGGATATAAA  696

seq1  GTGAATACATATATACATACACACATATATAAAATTCATACCTGAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATACATATATACATACACACATATATAAAATTCATACCTGAATTAA  746

seq1  AATCTCATATTCAATGCTTAATTTTTCTTTTTCTTAACAGTTTAATAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCATATTCAATGCTTAATTTTTCTTTTTCTTAACAGTTTAATAAAG  796

seq1  TTATTATCAGATTAAAAATTTTAGAACATAAAATCATCCCAGCAAAGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCAGATTAAAAATTTTAGAACATAAAATCATCCCAGCAAAGTGG  846

seq1  GTGAAAAAAATCCTTGTAGAACTGTATATTTTAAAGCCAAGTAATAATTG  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTG-AAAAAATCCTTGTAGAACTGTATATTTTAAAGCCAAGTAATAATTG  895

seq1  AATCCC-TGCAGACTAAACAATATCACTTAGCAGCCTGCACAACGTGAAA  949
      |||||| ||||||||||   ||||||| || |||||||||||||||||||
seq2  AATCCCTTGCAGACTAA--CATATCAC-TAACAGCCTGCACAACGTGAAA  942

seq1  GACTAAAAGCTTTTAATTAGACTTTTACTCAATAGGGGAGAAAAAATAAT  999
      |||| ||||||||||||||||||||||||||||| ||||| |||||||||
seq2  GACT-AAAGCTTTTAATTAGACTTTTACTCAATA-GGGAG-AAAAATAAT  989

seq1  TTAAAAGATGGAGGGCTAATGCTGAAT  1026
      ||||| |   |||||||||||| ||||
seq2  TTAAATGTATGAGGGCTAATGCGGAAT  1016