BAC Information

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BAC

Clone NameB6Ng01-055A04
Chromosome10 (Build37)2 (Build37)
Map Location 104,053,903 - 104,054,36340,750,919 - 40,751,963
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055A04.bB6Ng01-055A04.g
ACCDH877594DH877595
length9721,041
definitionDH877594|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A04, 5' end.DH877595|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(40,750,919 - 40,751,963)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggacagaacccagat
gccgctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgcctggcctagcaacac
agaagtggatgcccacagtcagctaatgatggatacaggctcccatgaga
gctagagaaagtactcaagagc
gaattcacattttataagatggggaactttattgttttagttttatggag
cttgcataacaagattattaatctaatattctatttacagtaaaaattct
cattatagctgttgttgattttcaaagtatcttcaagagaatattctgtg
ataattattaatcaaatggttcttttctgttataaaattattcctttcta
gtattaacacattattttaaaagttttcaatgcttatacagttttaaact
atgtaaaaaaaatcaagacgctcctgcaagcattggcatgtgactagcta
gtgtaggaactaccagcaaaataggcagctaatgtcaggtgatctatgca
ccatcccaacggatgtaaagtatatgaggattttgtctcaatgatgcatt
cattaaaaatgtgttcaccgaaaatgcgggataaaattgctttaaaataa
tgacaatagatcacttcaatattatattaaataaattataaggatcactt
tccgatgaacaatgggacagatatgtcccaagttgtctgcttttctgcac
taagtgtacaaggggacaaatgttctccagtcaagagaagaaccaagaga
gaattctatattctccagattctataacatatttcaattttaaaaacaat
cataatttaaaagtgattttacttacagactattttttatcttgtacaaa
tttaagatatactattatcattaattaaatgtttatttgtggatttcaag
aaacataaaatgtggggagccatcttggttccaggactctaccaaaagta
gtctgcacagctcagagtgtgcactgcagaggctagcggcttctgggaca
ggcgggagccacagagcttctggggcagcacccttttcagctccagatct
ccggccaccttcctggccagaggacatgtgtctgcccggcccgggagatt
ttgcctcagatcgaaagaagccatcgtggttccgggactccacgaaagta
gtctgcacaggtgaagagtgtgactacagaagctaacagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-055A04.b_47_517 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||| |||||||||||||| ||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGCGGCATCTGGGTTCTGTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||||||||||||||||||
seq2  GTATTCCTCAGGTGAGAATTC  471

seq1: chr2_40750919_40751963
seq2: B6Ng01-055A04.g_66_1106 (reverse)

seq1  AGCTGTTAGCTTCTGTAGTCCACACTC-TCACCTGTGCAGACTACTTTCG  49
      ||||||||||||||||||| ||||||| ||||||||||||||||||||| 
seq2  AGCTGTTAGCTTCTGTAGT-CACACTCTTCACCTGTGCAGACTACTTTC-  48

seq1  GTGGAGTCCCGGAACCACGATGGCTTCTTTCGATCCTGAGGCAAAAATCT  99
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  GTGGAGTCCCGGAACCACGATGGCTTCTTTCGAT-CTGAGGC-AAAATCT  96

seq1  CCCGGGCCGGGCAGACACATGTCCTCTGGCCAGGAAGGTGGCCGGAGATC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGCCGGGCAGACACATGTCCTCTGGCCAGGAAGGTGGCCGGAGATC  146

seq1  TGGAGCCTGAAAAGGGTGCTGCCCCAGAAGCTCTGTGGCTCCCGCCTGTC  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAG-CTGAAAAGGGTGCTGCCCCAGAAGCTCTGTGGCTCCCGCCTGTC  195

seq1  CCAGAAGCCGCTAGCCTCTGCAGTGCACACTCTGAGCTGTGCAGACTACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCCGCTAGCCTCTGCAGTGCACACTCTGAGCTGTGCAGACTACT  245

seq1  TTTGGTAGAGTCCTGGAACCAAGATGGCTCCCCACATTTTATGTTTCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAGAGTCCTGGAACCAAGATGGCTCCCCACATTTTATGTTTCTTG  295

seq1  AAATCCACAAATAAACATTTAATTAATGATAATAGTATATCTTAAATTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACAAATAAACATTTAATTAATGATAATAGTATATCTTAAATTTG  345

seq1  TACAAGATAAAAAATAGTCTGTAAGTAAAATCACTTTTAAATTATGATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGATAAAAAATAGTCTGTAAGTAAAATCACTTTTAAATTATGATTG  395

seq1  TTTTTAAAATTGAAATATGTTATAGAATCTGGAGAATATAGAATTCTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATTGAAATATGTTATAGAATCTGGAGAATATAGAATTCTCTC  445

seq1  TTGGTTCTTCTCTTGACTGGAGAACATTTGTCCCCTTGTACACTTAGTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTTCTCTTGACTGGAGAACATTTGTCCCCTTGTACACTTAGTGC  495

seq1  AGAAAAGCAGACAACTTGGGACATATCTGTCCCATTGTTCATCGGAAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCAGACAACTTGGGACATATCTGTCCCATTGTTCATCGGAAAGT  545

seq1  GATCCTTATAATTTATTTAATATAATATTGAAGTGATCTATTGTCATTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTATAATTTATTTAATATAATATTGAAGTGATCTATTGTCATTAT  595

seq1  TTTAAAGCAATTTTATCCCGCATTTTCGGTGAACACATTTTTAATGAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCAATTTTATCCCGCATTTTCGGTGAACACATTTTTAATGAATG  645

seq1  CATCATTGAGACAAAATCCTCATATACTTTACATCCGTTGGGATGGTGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGAGACAAAATCCTCATATACTTTACATCCGTTGGGATGGTGCA  695

seq1  TAGATCACCTGACATTAGCTGCCTATTTTGCTGGTAGTTCCTACACTAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCACCTGACATTAGCTGCCTATTTTGCTGGTAGTTCCTACACTAGC  745

seq1  TAGTCACATGCCAATGCTTGCAGGAGCGTCTTGATTTTTTTTACATAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACATGCCAATGCTTGCAGGAGCGTCTTGATTTTTTTTACATAGTT  795

seq1  TAAAACTGTATAAGCATTGAAAACTTTTAAAATAATGTGTTAATACTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGTATAAGCATTGAAAACTTTTAAAATAATGTGTTAATACTAGA  845

seq1  AAGGAATAATTTTATAACAGAAAAGAACCATTTGATTAATAATTATCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAATTTTATAACAGAAAAGAACCATTTGATTAATAATTATCACA  895

seq1  GAATATTCTCTTGAAGATACTTTGAAAATCAACAACAGCTATAATGAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCTCTTGAAGATACTTTGAAAATCAACAACAGCTATAATGAGAA  945

seq1  TTTTTACTGTAAATAGAATATTAGATTAATAATCTTGTTATGCAAGCTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTGTAAATAGAATATTAGATTAATAATCTTGTTATGCAAGCTCC  995

seq1  ATAAAACTAAAACAATAAAGTTCCCCATCTTATAAAATGTGAATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTAAAACAATAAAGTTCCCCATCTTATAAAATGTGAATTC  1041