BAC Information

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BAC

Clone NameB6Ng01-055F09
Chromosome10 (Build37)
Map Location 40,038,466 - 40,179,902
singlet/doubletdoublet
Overlap geneLOC668051, Cdc2l6, LOC666374
Upstream geneFyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2
Downstream geneSlc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6, A530089I17Rik, LOC633979, Zbtb24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055F09.bB6Ng01-055F09.g
ACCDH877814DH877815
length9841,112
definitionDH877814|Mus musculus domesticus DNA, BAC clone: B6Ng01-055F09, 5' end.DH877815|Mus musculus domesticus DNA, BAC clone: B6Ng01-055F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,178,914 - 40,179,902)(40,038,466 - 40,039,586)
sequence
gaattcacctggctttatgtttaatagtcattcaattaccaattatttgg
aaaaacagggaaacctaccaaactataactcggctttatctatccctatc
cctcacatgcaatgaggaacattcagtgttgttgttgttgtttctctaag
ctagaagttctaggaaataaaggaaatgtactgaatggaagactacttca
atttgaatatgaaagcacctaacaaacaataacactgcaaatttacagaa
gagaaccaaaaagagccctgaaacctatagagacaagatggggcttaaaa
gctgggtggtgctgatgcaggcctttaaaccctgcactgaggaggcataa
gcaggcagatctctcggatacacaaagaaacacctgctcagtctcatact
gctcctccgatgaatgtttttagagctgaccatagggttaatggacatcc
ttagttgcctgtagatctttgtgtgtttgggactctaccaaatgtgtttt
cataagttgccaacaggtagaataagacagctttctttctgattctttgc
taagaagataactatattttgaattaatattgttatctgtggggcagtgg
gcgctgggggaataaaggggagtgggagaaacctctgcgtcctgccagag
ttctggtgctctgggtgggtggacgcggaaggctgccgcacacttttctt
acggccccgggtgggtaatctgactgtgtgaagctactgaccccagctcg
gagggtggtggacaagggtcagtcctaggcaccagggttcccgcttccgg
catcccacactggatacctcggaggagctgagaacagaacgggggccctg
gagcagcactaagccccggggtcgaagggaggagagggcaagggagagag
ggcaggtgatggttccacgcaggcgagagcccttggtccgtctgtggctg
gattgcaggagactttcagcggaggttaaaggcg
gaattcaaagctagccaggggccggaaaggtggctccatggtgcaaatgc
ttgctgcacaagcctggtagccttatctcaattccagaacccatactgga
aggacagaatccactcctgagatttgtctgatacgtgttctgtaaccctc
acaagtgtgtgcacatacacacaaacacacatacatgcacaaatgaaaaa
taaagttaggaagaaacaaaaaaagaagcctgccaaagctacctaataaa
atagtgtctcaaaaataaataaataaaacacacacagaggttatattata
aatatcttctgctggatggtctaattcataactcttaaatttaaccctat
ttaatacgaaggtaagtatccttaacgactctttccaatatcttctttca
taaaattgcctttatgccacacttcttttttttttttcttttttcttttt
tcttttttttttttggttttttgagacaaggtttctctgtatagccttgg
ctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatc
cgcctgcctctgccttcccaagtgctgggattaaaggtgtgcgccaccac
gcccggtttatgccacacttctatcaacaatctaatcactgctcacaacc
acatacgaatacctaagaagcctccttcatgccacagttttaatcaagaa
accctttttcggggctggtgagatggctcagtgggtaagagcacccgatt
gctcttccaaaggtccggagttcaaatcccagcaaccacatggtggctca
caaccatcggtaacaaaatctgactccctcttctggagtgtctgaagaaa
gcgacagtgtacttaatatgtaataaataagtaaattcttaaaaaaaaaa
aaagaaaccctttatcatagtgagcgtcacagtgttgtctttgatggaat
gagcaatgtgtctttttctttgaacactcctagctctcctgtgctgggtt
tctcagagcctgatagcagcggatgagaaagtggcctggagaatctactc
agtggcctcagcttggaactgattggcttcgagtacttgatcagctttaa
gaaagactctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_40178914_40179902
seq2: B6Ng01-055F09.b_49_1032 (reverse)

seq1  CGCCTCTAACCTCCCGCTGGAAAGTCTTCCTGCACTCCAGCCACAGACGG  50
      ||||| |||||| ||||| ||||||| ||||||| |||||||||||||||
seq2  CGCCTTTAACCT-CCGCT-GAAAGTC-TCCTGCAATCCAGCCACAGACGG  47

seq1  ACCAAGGGCTCTCGCCTGCGTGGGAACCATCACCTGCCCTCTCTCCCCTT  100
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  ACCAAGGGCTCTCGCCTGCGT-GGAACCATCACCTGCCCTCTCT-CCCTT  95

seq1  GCCCTCTCCTCCCTTCGGCCCCGGGGCTTAGTGCTGCTCCAGGGCCCCCG  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCCTCTCCTCCCTTCGACCCCGGGGCTTAGTGCTGCTCCAGGGCCCCCG  145

seq1  TTCTGTTCTCAGCTCCTCCGAGGTATCCAGTGTGGGATGCCGGAAGCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTCAGCTCCTCCGAGGTATCCAGTGTGGGATGCCGGAAGCGGG  195

seq1  AAACCTGGTGCCTAGGACTGACCCTTGTCCACCACCCTCCGAGCTGGGGT  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGTGCCTAGGACTGACCCTTGTCCACCACCCTCCGAGCTGGGGT  245

seq1  CAGTAGCTTCACACAGTCAGATTACCCACCCGGGGCCGTAAGAAAAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCTTCACACAGTCAGATTACCCACCCGGGGCCGTAAGAAAAGTGT  295

seq1  GCGGCAGCCTTCCGCGTCCACCCACCCAGAGCACCAGAACTCTGGCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAGCCTTCCGCGTCCACCCACCCAGAGCACCAGAACTCTGGCAGGA  345

seq1  CGCAGAGGTTTCTCCCACTCCCCTTTATTCCCCCAGCGCCCACTGCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAGGTTTCTCCCACTCCCCTTTATTCCCCCAGCGCCCACTGCCCCA  395

seq1  CAGATAACAATATTAATTCAAAATATAGTTATCTTCTTAGCAAAGAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAACAATATTAATTCAAAATATAGTTATCTTCTTAGCAAAGAATCA  445

seq1  GAAAGAAAGCTGTCTTATTCTACCTGTTGGCAACTTATGAAAACACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGCTGTCTTATTCTACCTGTTGGCAACTTATGAAAACACATTT  495

seq1  GGTAGAGTCCCAAACACACAAAGATCTACAGGCAACTAAGGATGTCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTCCCAAACACACAAAGATCTACAGGCAACTAAGGATGTCCATT  545

seq1  AACCCTATGGTCAGCTCTAAAAACATTCATCGGAGGAGCAGTATGAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTATGGTCAGCTCTAAAAACATTCATCGGAGGAGCAGTATGAGACT  595

seq1  GAGCAGGTGTTTCTTTGTGTATCCGAGAGATCTGCCTGCTTATGCCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGTGTTTCTTTGTGTATCCGAGAGATCTGCCTGCTTATGCCTCCT  645

seq1  CAGTGCAGGGTTTAAAGGCCTGCATCAGCACCACCCAGCTTTTAAGCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGGGTTTAAAGGCCTGCATCAGCACCACCCAGCTTTTAAGCCCC  695

seq1  ATCTTGTCTCTATAGGTTTCAGGGCTCTTTTTGGTTCTCTTCTGTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTCTCTATAGGTTTCAGGGCTCTTTTTGGTTCTCTTCTGTAAATT  745

seq1  TGCAGTGTTATTGTTTGTTAGGTGCTTTCATATTCAAATTGAAGTAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTTATTGTTTGTTAGGTGCTTTCATATTCAAATTGAAGTAGTCT  795

seq1  TCCATTCAGTACATTTCCTTTATTTCCTAGAACTTCTAGCTTAGAGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCAGTACATTTCCTTTATTTCCTAGAACTTCTAGCTTAGAGAAAC  845

seq1  AACAACAACAACACTGAATGTTCCTCATTGCATGTGAGGGATAGGGATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACACTGAATGTTCCTCATTGCATGTGAGGGATAGGGATAG  895

seq1  ATAAAGCCGAGTTATAGTTTGGTAGGTTTCCCTGTTTTTCCAAATAATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCCGAGTTATAGTTTGGTAGGTTTCCCTGTTTTTCCAAATAATTG  945

seq1  GTAATTGAATGACTATTAAACATAAAGCCAGGTGAATTC  989
      |||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGAATGACTATTAAACATAAAGCCAGGTGAATTC  984

seq1: chr10_40038466_40039586
seq2: B6Ng01-055F09.g_69_1180

seq1  GAATTCAAAGCTAGCCAGGGGCCGGAAAGGTGGCTCCATGGTGCAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCTAGCCAGGGGCCGGAAAGGTGGCTCCATGGTGCAAATGC  50

seq1  TTGCTGCACAAGCCTGGTAGCCTTATCTCAATTCCAGAACCCATACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCACAAGCCTGGTAGCCTTATCTCAATTCCAGAACCCATACTGGA  100

seq1  AGGACAGAATCCACTCCTGAGATTTGTCTGATACGTGTTCTGTAACCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAATCCACTCCTGAGATTTGTCTGATACGTGTTCTGTAACCCTC  150

seq1  ACAAGTGTGTGCACATACACACAAACACACATACATGCACAAATGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTGTGCACATACACACAAACACACATACATGCACAAATGAAAAA  200

seq1  TAAAGTTAGGAAGAAACAAAAAAAGAAGCCTGCCAAAGCTACCTAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAGGAAGAAACAAAAAAAGAAGCCTGCCAAAGCTACCTAATAAA  250

seq1  ATAGTGTCTCAAAAATAAATAAATAAAACACACACAGAGGTTATATTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTCTCAAAAATAAATAAATAAAACACACACAGAGGTTATATTATA  300

seq1  AATATCTTCTGCTGGATGGTCTAATTCATAACTCTTAAATTTAACCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTCTGCTGGATGGTCTAATTCATAACTCTTAAATTTAACCCTAT  350

seq1  TTAATACGAAGGTAAGTATCCTTAACGACTCTTTCCAATATCTTCTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACGAAGGTAAGTATCCTTAACGACTCTTTCCAATATCTTCTTTCA  400

seq1  TAAAATTGCCTTTATGCCACACTTCTTTTTTTTTTTTCTTTTTTCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGCCTTTATGCCACACTTCTTTTTTTTTTTTCTTTTTTCTTTTT  450

seq1  TCTTTTTTTTTTTTGGTTTTTTGAGACAAGGTTTCTCTGTATAGCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTGGTTTTTTGAGACAAGGTTTCTCTGTATAGCCTTGG  500

seq1  CTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  550

seq1  CGCCTGCCTCTGCCTTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCCTCTGCCTTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCAC  600

seq1  GCCCGGTTTATGCCACACTTCTATCAACAATCTAATCACTGCTCACAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGTTTATGCCACACTTCTATCAACAATCTAATCACTGCTCACAACC  650

seq1  ACATACGAATACCTAAGAAGCCTCCTTCATGCCACAGTTTTAATCAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACGAATACCTAAGAAGCCTCCTTCATGCCACAGTTTTAATCAAGAA  700

seq1  ACCCTTTTTCGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTTCGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGATT  750

seq1  GCTCTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCA  800

seq1  CAACCATCGGTAACAAAATCTGACTCCCTCTTCTGGAGTGTCTGAAGACA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAACCATCGGTAACAAAATCTGACTCCCTCTTCTGGAGTGTCTGAAGAAA  850

seq1  GCGACAGTGTACTT-ATATGTAATAAATAAGTAAAATCTTAAAAAAAAAA  899
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  GCGACAGTGTACTTAATATGTAATAAATAAGTAAATTCTTAAAAAAAAAA  900

seq1  AAAGAAACCCTTTATCATAGTGAGCGTCACAGTGTTGTCTCTGATGGAAT  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAGAAACCCTTTATCATAGTGAGCGTCACAGTGTTGTCTTTGATGGAAT  950

seq1  GAGCAATGTGTCTTTTCCTGTGAACACTCCTAGCTCTCCTGTGCTGTGTT  999
      |||||||||||||||| || |||||||||||||||||||||||||| |||
seq2  GAGCAATGTGTCTTTTTCTTTGAACACTCCTAGCTCTCCTGTGCTGGGTT  1000

seq1  TCTCAGCAGCCTGATTAGCCAGCGGATGAGAAAGTGGCCTGAAGAATCCT  1049
      |||||| ||||||| ||| |||||||||||||||||||||| ||||| ||
seq2  TCTCAG-AGCCTGA-TAG-CAGCGGATGAGAAAGTGGCCTGGAGAAT-CT  1046

seq1  ACTCAGTGCCCTCCAGCCTGGAACTGA-TGGCTTCCAGAGTACTTGATCA  1098
      |||||||| ||| |||| ||||||||| |||||||  |||||||||||||
seq2  ACTCAGTGGCCT-CAGCTTGGAACTGATTGGCTTC--GAGTACTTGATCA  1093

seq1  GCCTTTGAGGAAAGACACTCTCC  1121
      ||  || | |||||  |||||||
seq2  GC--TTTAAGAAAG--ACTCTCC  1112