BAC Information

Click to search

BAC

Clone NameB6Ng01-056N02
Chromosome10 (Build37)
Map Location 21,389,597 - 21,527,405
singlet/doubletdoublet
Overlap geneEG432436, LOC100039936
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik
Downstream geneLOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056N02.bB6Ng01-056N02.g
ACCDH878862DH878863
length1,087354
definitionDH878862|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N02, 5' end.DH878863|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,389,597 - 21,390,697)(21,527,052 - 21,527,405)
sequence
gaattctatattctaaaagacgtcggaatgctccccagccccaagaacaa
taagccacggacaggaaatgaaatatgaagcaaagccaaaacccttacta
cagctttgttttattaagctctgtgctcatgagatactgtcagccacgat
gaaatgtgacttttctaaacgttatcatttaatgacgcagaggatgcaaa
aataaaacaagccatgcccagatgctgatggcagaacaagtggaagtggg
cattatagctacattgacgtgatgacatttccatactcagtgccgaaagc
tggccagctctcagggttctttttagagactttcaaggccagctcctatg
accacagaagtagatcacttatctgtctgtaggtgaaactgtcatccaat
aacaatccaaaacttcatctgaacacactgatttagttctcattatcatt
aactaaaaacagtatgaggatgttaaacattgaaggatatagagttagga
gtcccaagagagcctaggcagtcagtaacagtgtagcagtgaaaatgaaa
ctccctgtgtaagaacaaggcctttccactccagaccacggcactctgtc
tgcacagaggctccaagtggaaaagtactgaacttgcccgcttgatagtt
catcttccaaaccacggtctagaacctgatgggggccgtttatgtgagag
gccacagtgactaacccacgtctgtgtgccatcataaggaattcttcttt
cctcttctcccatccaaacaacagtgaaaagaaatgggaacaagtttcac
aaaaatgtttgcatattgctaaatgttttgctttaagaaatacttgtcac
accaaaacccatgagatgcagtttgtgtgtctttcttttctttgccttat
gtttgagtagaagatatcatctaaaataaaactttattaaaatctctgac
atgagagggagtcctcagccaaattagctcctgagttgctgtgacatatg
atgtcaggagtctgccagtacagaatatctggactaagatgacctctgac
ttacagaagagaatgatgaatcccataatccatatgt
taggaaactcaggcccacacagagcaaccctgtctctgaaaaaaactaac
aaacaaaacaaaagaacacctctagaagccgtttccaaaccaagacaaac
aaggtggtagtggccatgagtcacatcagtaaaaacaaagaagtgtattt
atgacaggacatccttcacctctgcctccaaaatgtatatagcactggct
acaactccaatgggaggcatttccatatgagtgtgggaatttgaacagac
tgttgcaaagttatactttttcagatgttaaggagcccatgagcatgttg
ctagagtcttgtaagatcaatctctgctttcatctccctctccccctccc
cctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21389597_21390697
seq2: B6Ng01-056N02.b_45_1131

seq1  GAATTCTATATTCTAAAAGACGTCGGAATGCTCCCCAGCCCCAAGAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTCTAAAAGACGTCGGAATGCTCCCCAGCCCCAAGAACAA  50

seq1  TAAGCCACGGACAGGAAATGAAATATGAAGCAAAGCCAAAACCCTTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACGGACAGGAAATGAAATATGAAGCAAAGCCAAAACCCTTACTA  100

seq1  CAGCTTTGTTTTATTAAGCTCTGTGCTCATGAGATACTGTCAGCCACGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGTTTTATTAAGCTCTGTGCTCATGAGATACTGTCAGCCACGAT  150

seq1  GAAATGTGACTTTTCTAAACGTTATCATTTAATGACGCAGAGGATGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGACTTTTCTAAACGTTATCATTTAATGACGCAGAGGATGCAAA  200

seq1  AATAAAACAAGCCATGCCCAGATGCTGATGGCAGAACAAGTGGAAGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAAGCCATGCCCAGATGCTGATGGCAGAACAAGTGGAAGTGGG  250

seq1  CATTATAGCTACATTGACGTGATGACATTTCCATACTCAGTGCCGAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGCTACATTGACGTGATGACATTTCCATACTCAGTGCCGAAAGC  300

seq1  TGGCCAGCTCTCAGGGTTCTTTTTAGAGACTTTCAAGGCCAGCTCCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCTCTCAGGGTTCTTTTTAGAGACTTTCAAGGCCAGCTCCTATG  350

seq1  ACCACAGAAGTAGATCACTTATCTGTCTGTAGGTGAAACTGTCATCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAAGTAGATCACTTATCTGTCTGTAGGTGAAACTGTCATCCAAT  400

seq1  AACAATCCAAAACTTCATCTGAACACACTGATTTAGTTCTCATTATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCAAAACTTCATCTGAACACACTGATTTAGTTCTCATTATCATT  450

seq1  AACTAAAAACAGTATGAGGATGTTAAACATTGAAGGATATAGAGTTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAACAGTATGAGGATGTTAAACATTGAAGGATATAGAGTTAGGA  500

seq1  GTCCCAAGAGAGCCTAGGCAGTCAGTAACAGTGTAGCAGTGAAAATGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAGAGAGCCTAGGCAGTCAGTAACAGTGTAGCAGTGAAAATGAAA  550

seq1  CTCCCTGTGTAAGAACAAGGCCTTTCCACTCCAGACCACGGCACTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTGTAAGAACAAGGCCTTTCCACTCCAGACCACGGCACTCTGTC  600

seq1  TGCACAGAGGCTCCAAGTGGAAAAGTACTGAACTTGCCCGCTTGATAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAGGCTCCAAGTGGAAAAGTACTGAACTTGCCCGCTTGATAGTT  650

seq1  CATCTTCCAAACCACGGTCTAGAACCTGATGGGGGCCGTTTATGTGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCAAACCACGGTCTAGAACCTGATGGGGGCCGTTTATGTGAGAG  700

seq1  GCCACAGTGACTAACCCACGTCTGTGTGCCATCATAAGGAATTCTTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGTGACTAACCCACGTCTGTGTGCCATCATAAGGAATTCTTCTTT  750

seq1  CCTCTTCTCCCATCCAAACAACAGTGAAAAGAAAATGGGAACAAGTTTCA  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTCTTCTCCCATCCAAACAACAGTGAAAAG-AAATGGGAACAAGTTTCA  799

seq1  CAAAAATGTTTGCATATTGCTAAATGTTTTGCTTTAAGAAATACTTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGTTTGCATATTGCTAAATGTTTTGCTTTAAGAAATACTTGTCA  849

seq1  CACCAAAACCCATGAGATGCAGTTTGTGTGTCTTTCTTTTCTTTGCCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAACCCATGAGATGCAGTTTGTGTGTCTTTCTTTTCTTTGCCTTA  899

seq1  TGTTTGAGTAGAAGATATCATCTAAAATAAAACTTTTAATTAAAAATCTT  950
      ||||||||||||||||||||||||||||||||||||  ||| |||||| |
seq2  TGTTTGAGTAGAAGATATCATCTAAAATAAAACTTT--ATT-AAAATC-T  945

seq1  CTGACATGAGAGAGAGTCCTTCAGCCAAATTAGCTCCTGAGTTTGCTGTG  1000
      |||||||||||| |||||| ||||||||||||||||||||| ||||||||
seq2  CTGACATGAGAGGGAGTCC-TCAGCCAAATTAGCTCCTGAG-TTGCTGTG  993

seq1  ACATATGATGTCAAGAGTCTTGCCAGTACAGATAATCTGGGACTAAAGAT  1050
      ||||||||||||| ||||| ||||||||||||  |||| ||||| |||| 
seq2  ACATATGATGTCAGGAGTC-TGCCAGTACAGAATATCT-GGACT-AAGA-  1039

seq1  TGACCTCTGACTTATACAGTAGAGAATGATGATTCCCAATAATCCATATG  1100
      ||||||||||||  ||||| |||||||||||| |||| ||||||||||||
seq2  TGACCTCTGACT--TACAGAAGAGAATGATGAATCCC-ATAATCCATATG  1086

seq1  T  1101
      |
seq2  T  1087

seq1: chr10_21527052_21527405
seq2: B6Ng01-056N02.g_75_428 (reverse)

seq1  CAGGGGGAGGGGGAGAGGGAGATGAAAGCAGAGATTGATCTTACAAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGAGGGGGAGAGGGAGATGAAAGCAGAGATTGATCTTACAAGACT  50

seq1  CTAGCAACATGCTCATGGGCTCCTTAACATCTGAAAAAGTATAACTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAACATGCTCATGGGCTCCTTAACATCTGAAAAAGTATAACTTTGC  100

seq1  AACAGTCTGTTCAAATTCCCACACTCATATGGAAATGCCTCCCATTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTGTTCAAATTCCCACACTCATATGGAAATGCCTCCCATTGGAG  150

seq1  TTGTAGCCAGTGCTATATACATTTTGGAGGCAGAGGTGAAGGATGTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCCAGTGCTATATACATTTTGGAGGCAGAGGTGAAGGATGTCCTG  200

seq1  TCATAAATACACTTCTTTGTTTTTACTGATGTGACTCATGGCCACTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATACACTTCTTTGTTTTTACTGATGTGACTCATGGCCACTACCA  250

seq1  CCTTGTTTGTCTTGGTTTGGAAACGGCTTCTAGAGGTGTTCTTTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTGTCTTGGTTTGGAAACGGCTTCTAGAGGTGTTCTTTTGTTTT  300

seq1  GTTTGTTAGTTTTTTTCAGAGACAGGGTTGCTCTGTGTGGGCCTGAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAGTTTTTTTCAGAGACAGGGTTGCTCTGTGTGGGCCTGAGTTT  350

seq1  CCTA  354
      ||||
seq2  CCTA  354