BAC Information

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BAC

Clone NameB6Ng01-056P04
Chromosome10 (Build37)
Map Location 20,339,041 - 20,487,832
singlet/doubletdoublet
Overlap genePde7b
Upstream geneIl22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344
Downstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056P04.bB6Ng01-056P04.g
ACCDH878957DH878958
length1,034785
definitionDH878957|Mus musculus domesticus DNA, BAC clone: B6Ng01-056P04, 5' end.DH878958|Mus musculus domesticus DNA, BAC clone: B6Ng01-056P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,339,041 - 20,340,094)(20,487,133 - 20,487,832)
sequence
gaattctcaagccaatataatatgtccaccctactaccatcaccgtgata
ttgttctattcttgttttctttagttacctgggcccagggacttctgtca
taaagagagatttccctggagaaaaacctttgagaggtcagtctaggatt
ggctgttccaggatgctgcctgtccctgctaacagcaactctgtgctccc
atgagaagccatggcttgggctgaacctcatttttgacagttttccatct
cagtgaaacattcagttaccaggcccaaaagcccgaggccagatactctc
agagatggtccttatttagcattgataatattctaagtgactcactctac
ccacagatatagatattatcaaagctgagtggccaatgctgaactcaaat
cagggaagggataaataaggaaatgaaaagcagtgtagagcttgtctgag
ctcatagattccaggaataccaactttcttgttctaatttgaacttcgaa
atgtttgtgcaaggcaaaacttaacaattcaatctgttatttaacaacag
gccactgctgcatcatgagtaggattgaccaacaagattagtatttgtgt
ttataaatgaactaccaaaaccattacaaacataagcaacttggtagaaa
atgggtcaaagtaattcacaacagggaaatctgaatgatcaataaaccca
gaaaatatactgacctatatcaatatttgggaatgaataaattatattaa
gataaagtgaactattccaataattgtgaatatattgtactgagataaaa
gacttttaaaacactgatttgacaagatttagaaatctggaataataata
ttttcagaaatccacagaatgtgaagctttctttcgtcctttaggctagg
gtataaatactcactgcaaattggcaatgttggtatatctagcaagtcaa
aagtcatacattgtgacagagagatgacttgtagaatttaactgggatca
tttcccgtcacttagcgaaatatcatccatgagt
gaattcctgtgtcctcaacaaatgactcactatacttgcacagttttgga
taatatctagagctatggtacaaataacattggaaatacaactgtttctt
aatttgtttaatactattgacctaacaatgtaactatttttctaatttat
aatcctacatggttaatgatcaattaaatatacaatgtcacaaagcataa
tttcatttttataaactgccaggaactcaagaatgcttccttattcttag
aaatttctacaggtctaaataaaacaatgaaatgtctttgaactactttt
ggaagtttcaaattccataaacttgaaagtatttgctgcaatacaaggag
accaatgtttaaagtgccttttattgagagttagagaaaactctcacaag
aattcttatttgaaaataaatcaaaccttactcaatattcaatgcaagaa
taatttagttaaacttcaaaatcgatgagattaaaattattttacagtaa
taaaccaaattctgactctcaaagcttggattctcatcagcaaagtaggc
cactgggtctcacaaaaatacagtaggtcaaggatgttgcctggtggcgg
aggtcctgcttagtatgcgtgaggcctgggtttgatcccaaaaaggaagg
aaagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggagggat
gcagctctggagagcatcctttggctccaacttgcagtgaccaaggggac
actggtcatcctcctccactggctgggcagtgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_20339041_20340094
seq2: B6Ng01-056P04.b_45_1078

seq1  GAATTCTCAAGCCAATATAATATGTCCATGCAACTACCATCACCGTGATA  50
      ||||||||||||||||||||||||||||  | ||||||||||||||||||
seq2  GAATTCTCAAGCCAATATAATATGTCCACCCTACTACCATCACCGTGATA  50

seq1  TTGTTCTATTCTTGTTTTCTTTAGTTACCTGGGCCCAGGGACTTCTGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTATTCTTGTTTTCTTTAGTTACCTGGGCCCAGGGACTTCTGTCA  100

seq1  TAAAGAGAGATTTCCCTGGAGAAAAACCTTTGAGAGGTCAGTCTAGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGATTTCCCTGGAGAAAAACCTTTGAGAGGTCAGTCTAGGATT  150

seq1  GGCTGTTCCAGGATGCTGCCTGTCCCTGCTAACAGCAACTCTGTGCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTCCAGGATGCTGCCTGTCCCTGCTAACAGCAACTCTGTGCTCCC  200

seq1  ATGAGAAGCCATGGCTTGGGCTGAACCTCATTTTTGACAGTTTTCCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGCCATGGCTTGGGCTGAACCTCATTTTTGACAGTTTTCCATCT  250

seq1  CAGTGAAACATTCAGTTACCAGGCCCAAAAGCCCGAGGCCAGATACTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAACATTCAGTTACCAGGCCCAAAAGCCCGAGGCCAGATACTCTC  300

seq1  AGAGATGGTCCTTATTTAGCATTGATAATATTCTAAGTGACTCACTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGTCCTTATTTAGCATTGATAATATTCTAAGTGACTCACTCTAC  350

seq1  ACACAGATATAGATATTATCAAAGCTGAGTGGCCAATGCTGAACTCAAAT  400
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATATAGATATTATCAAAGCTGAGTGGCCAATGCTGAACTCAAAT  400

seq1  CAGGGAAGGGATAAATAAGGAAATGAAAAGCAGTGTAGAGCTTGTCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGGGATAAATAAGGAAATGAAAAGCAGTGTAGAGCTTGTCTGAG  450

seq1  CTCATAGATTCCAGGAATACCAACTTTCTTGTTCTAATTTGAACTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCATAGATTCCAGGAATACCAACTTTCTTGTTCTAATTTGAACTTCGAA  500

seq1  ATGTTTGTGCAAGGCAAAACTTAACAATTCAATCTGTTATTTAACAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTGCAAGGCAAAACTTAACAATTCAATCTGTTATTTAACAACAG  550

seq1  GCCACTGCTGCATCATGAGTAGGATTGACCAACAAGATTAGTATTTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGCTGCATCATGAGTAGGATTGACCAACAAGATTAGTATTTGTGT  600

seq1  TTATAAATGAACTACCAAAACCATTACAAACATAAGCAACTTGGTAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGAACTACCAAAACCATTACAAACATAAGCAACTTGGTAGAAA  650

seq1  ATGGGTCAAAGTAATTCACAACGGGGAAATCTGAATGATCAATAAACCCA  700
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGGGTCAAAGTAATTCACAACAGGGAAATCTGAATGATCAATAAACCCA  700

seq1  GAAAATATACTGACCTATATCAATATTTGGGAATGAATAAATTATATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATACTGACCTATATCAATATTTGGGAATGAATAAATTATATTAA  750

seq1  GATAAAGTGAACTATTCCAATAATTGTGAATATATTGTACTGAGATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGTGAACTATTCCAATAATTGTGAATATATTGTACTGAGATAAAA  800

seq1  GACTTTTAAAAACACTGATTTGACAAAATTTAGAAATCTGGAAATAATAA  850
      ||||||| |||||||||||||||||| |||||||||||||| |||||| |
seq2  GACTTTT-AAAACACTGATTTGACAAGATTTAGAAATCTGG-AATAAT-A  847

seq1  ATATTTTCAGAAATCCAGAGAAATGTGAAGCTTTCTTTTCGTCCTTTTAG  900
      ||||||||||||||||| || |||||||||||||| |||||||||||   
seq2  ATATTTTCAGAAATCCACAG-AATGTGAAGCTTTC-TTTCGTCCTTT--A  893

seq1  GGCTAGGGTATAAAATAGTCACTGCAGAATTGGTAAATGTTTGTAATATC  950
      ||||||||||| ||||| |||||||| ||||||  |||||| || |||||
seq2  GGCTAGGGTAT-AAATACTCACTGCA-AATTGG-CAATGTTGGT-ATATC  939

seq1  TAGCAAAGTCAAAAAGTCATACATTGTGACAGAGAAGATGACTTTGTAGA  1000
      |||| ||||| ||||||||||||||||||||||| ||||||| |||||||
seq2  TAGC-AAGTC-AAAAGTCATACATTGTGACAGAG-AGATGAC-TTGTAGA  985

seq1  ATTTTAACTGGGATTATTTTCACATACAACTTAGGTGAAATATCATCTAT  1050
      | |||||||||||| | |||| | |   ||||| | ||||||||||| ||
seq2  A-TTTAACTGGGATCA-TTTCCCGT--CACTTA-GCGAAATATCATCCAT  1030

seq1  GAGT  1054
      ||||
seq2  GAGT  1034

seq1: chr10_20487133_20487832
seq2: B6Ng01-056P04.g_66_764 (reverse)

seq1  TCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCT-CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTT  49

seq1  CCTTCCTTTTTGGGATCAAACCCAGGCCTCACGCATACTAAGCAGGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTTTTGGGATCAAACCCAGGCCTCACGCATACTAAGCAGGACCT  99

seq1  CCGCCACCAGGCAACATCCTTGACCTACTGTATTTCTGTGAGACCCAGTG  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCGCCACCAGGCAACATCCTTGACCTACTGTATTTTTGTGAGACCCAGTG  149

seq1  GCCTACTTTGCTGATGAGAATCCAAGCTTTGAGAGTCAGAATTTGGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACTTTGCTGATGAGAATCCAAGCTTTGAGAGTCAGAATTTGGTTTA  199

seq1  TTACTGTAAAATAATTTTAATCTCATCGATTTTGAAGTTTAACTAAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTAAAATAATTTTAATCTCATCGATTTTGAAGTTTAACTAAATTA  249

seq1  TTCTTGCATTGAATATTGAGTAAGGTTTGATTTATTTTCAAATAAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCATTGAATATTGAGTAAGGTTTGATTTATTTTCAAATAAGAATT  299

seq1  CTTGTGAGAGTTTTCTCTAACTCTCACTAAAAGGCACTTTAAACATTGGT  350
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTGTGAGAGTTTTCTCTAACTCTCAATAAAAGGCACTTTAAACATTGGT  349

seq1  CTCCTTGTATTGCAGCAAATACTTTCAAGTTTATGGAATTTGAAACTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTATTGCAGCAAATACTTTCAAGTTTATGGAATTTGAAACTTCC  399

seq1  AAAAGTAGTTCAAAGACATTTCATTGTTTTATTTAGACCTGTAGAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGTTCAAAGACATTTCATTGTTTTATTTAGACCTGTAGAAATTT  449

seq1  CTAAGAATAAGGAAGCATTCCTGAGTTCCTGGCAGTTTATAAAAATGAAA  500
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTAAGAATAAGGAAGCATTCTTGAGTTCCTGGCAGTTTATAAAAATGAAA  499

seq1  TTATGCTTTCTGACATTGTATATTTAATTGATCATTAACCATGTAGGCTT  550
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TTATGCTTTGTGACATTGTATATTTAATTGATCATTAACCATGTAGGATT  549

seq1  ATAAATTAGAAAAATAGTTACATTGTTAGGTCAATAGTATTAAACAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAGAAAAATAGTTACATTGTTAGGTCAATAGTATTAAACAAATT  599

seq1  AAGAAACAGTTGTATTTACAATGTTATTTGTACCATAGCTCTAGATATTA  650
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGAAACAGTTGTATTTCCAATGTTATTTGTACCATAGCTCTAGATATTA  649

seq1  TCCAAAACTGTGCAAGTATAGTGAGTCATTTGTTGAGGACACATGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCCAAAACTGTGCAAGTATAGTGAGTCATTTGTTGAGGACACAGGAATTC  699