BAC Information

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BAC

Clone NameB6Ng01-057E14
Chromosome10 (Build37)
Map Location 87,942,438 - 88,083,867
singlet/doubletdoublet
Overlap geneChpt1, 8030451F13Rik
Upstream geneAscl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3
Downstream geneLOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057E14.bB6Ng01-057E14.g
ACCDH879200DH879201
length975587
definitionDH879200|Mus musculus domesticus DNA, BAC clone: B6Ng01-057E14, 5' end.DH879201|Mus musculus domesticus DNA, BAC clone: B6Ng01-057E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,942,438 - 87,943,425)(88,083,287 - 88,083,867)
sequence
gaattcttgtaactaaaaatactctatcttctgtttattactcttggtaa
tttaatcttatttgagttgggtatagtaagtttgaggctggcctggtcta
cacagcaagcttcaggactcagatctactgaaagagactctctctcccca
aaacaaacaagcaaacaaacaaaacaaaaccctaaaattaaaccctgttt
taaattaataaatccagaaggacattttgagtcagagaaccaaagaaatt
aaaggatgctgtagtttaaagtcattcttttttgttttgttttgttttgt
ttttgttttttgagacagggtttctctgtgtagccctggctgtcctggaa
ctcactttgtagaccaggctggcctcgaactcagaaattcacctacctct
gcctcccaagtgctgggattaaaggcatgcaccaccaccacctagcagtt
taaagccattcttaaaagccattctaacagttttataaaaactaataaca
tctaactaagtactaccctcttatggtcaactatcttgaagataagagac
tttaaatatgtagatatcaaaagtgtcagaaattgtctccttttcactta
aaagtcctgactgtttaaaacaaatatgaataaatccacaaattatgata
gttataagcaaagtagaaagaacatagacaggcatatgtactccagaaat
aaggttaaaattttagttccaagttatcagactagttccttaaagtatat
ttcagtaaaaattttaataaaatttataagtcataaattatcccatctat
gaaacctttgacctttggaatcaatccagaactaatgctccactcttctt
gctactggtttggtccaggcacaaaatgaaagcaaacagactgcaccggt
atactatggttactagtacattatcaaacatgaaagaagagaatgtttaa
gtctaattgtttaaatgctttgtgt
gaattcattatatagaccaggtgtcctcagacttaaggtccctttgtcat
aacatccccctggttggcattacgggtgatgtcatcagcttcatttccat
attgggcaatacacaaaccacctgtaactccagctccagggactctgatg
ccctcttctggaccccgcagatatgtgcatatgcacatacacataattaa
aaatattttaaaagatgagtgtctgttttctttcttttctaaatcctggc
tgcaaataatacatgacgtgaaaaatgagaagatattataatacaggtca
gcagcaaatcttctctcaaggtgtgtaaatacattgtttcatattaatat
gtataactacttttttaattattattttttgagtttttgagacaggtttt
actctgtagccctggctggcctggaatgcattatgtagaccaggctggcc
tttgaacttggggaaatagcttctgctttctgagagctgagattataggt
gtgcatcactatgactggccctcatcattatttttttatggctattatct
ctttcagcatatgccatttagttatgtagcatttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_87942438_87943425
seq2: B6Ng01-057E14.b_45_1019

seq1  GAATTCTTGTAACTAAAAATACTCTATCTTCTGTTTATTACTCTTGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTAACTAAAAATACTCTATCTTCTGTTTATTACTCTTGGTAA  50

seq1  TTTAATCTTATTTGAGTTGGGTATAGTAAGTTTGAGGCTGGCCTGGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTTATTTGAGTTGGGTATAGTAAGTTTGAGGCTGGCCTGGTCTA  100

seq1  CACAGCAAGCTTCAGGACTCAGATCTACTGAAAGAGACTCTCTCTCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAAGCTTCAGGACTCAGATCTACTGAAAGAGACTCTCTCTCCCCA  150

seq1  AAACAAACAAGCAAACAAACAAAACAAAACCCTAAAATTAAACCCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAGCAAACAAACAAAACAAAACCCTAAAATTAAACCCTGTTT  200

seq1  TAAATTAATAAATCCAGAAGGACATTTTGAGTCAGAGAACCAAAGAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATAAATCCAGAAGGACATTTTGAGTCAGAGAACCAAAGAAATT  250

seq1  AAAGGATGCTGTAGTTTAAAGTCATTCTTTTTTGTTTTGTTTTGTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGCTGTAGTTTAAAGTCATTCTTTTTTGTTTTGTTTTGTTTTGT  300

seq1  TTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  350

seq1  CTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCTACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCACCTACCTCT  400

seq1  GCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACCACCTAGCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACCACCTAGCAGTT  450

seq1  TAAAGCCATTCTTAAAAGCCATTCTAACAGTTTTATAAAAACTAATAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCATTCTTAAAAGCCATTCTAACAGTTTTATAAAAACTAATAACA  500

seq1  TCTAACTAAGTACTACCCTCTTATGGTCAACTATCTTGAAGATAAGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTAAGTACTACCCTCTTATGGTCAACTATCTTGAAGATAAGAGAC  550

seq1  TTTAAATATGTAGATATCAAAAGTGTCAGAAATTGTCTCCTTTTCACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATGTAGATATCAAAAGTGTCAGAAATTGTCTCCTTTTCACTTA  600

seq1  AAAGTCCTGACTGTTTAAAACAAATATGAATAAATCCACAAATTATGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTGACTGTTTAAAACAAATATGAATAAATCCACAAATTATGATA  650

seq1  GTTATAAGCAAAGTAGAAAGAACATAGACAGGCATATGTACTCCAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAGCAAAGTAGAAAGAACATAGACAGGCATATGTACTCCAGAAAT  700

seq1  AAGGTTAAAATTTTAGTTCCAAGTTATCAGACTAGTTCCTTAAAGTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAAAATTTTAGTTCCAAGTTATCAGACTAGTTCCTTAAAGTATAT  750

seq1  TTCAGTAAAAATTTTAATAAAATTTATAAGTCATAAATTATCCCATCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAAAATTTTAATAAAATTTATAAGTCATAAATTATCCCATCTAT  800

seq1  GAAACCTTTGACCTTTGGAATCAATCCAGAACTAATGCTCCACTCTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTTGACCTTTGGAATCAATCCAGAACTAATGCTCCACTCTTCTT  850

seq1  GCTACTGGTTTGGTCCAGGCACAAAATGAAAGCAAACAGACTGCACCGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGGTTTGGTCCAGGCACAAAATGAAAGCAAACAGACTGCACCGGT  900

seq1  AATACTAATGGTTACTAGGTACAATTACAAAACATGAAAAGAAAGAAGAA  950
       ||||| |||||||||| |||| ||||  ||||||| ||||||   ||||
seq2  -ATACT-ATGGTTACTA-GTAC-ATTATCAAACATG-AAAGAA--GAGAA  943

seq1  TGTTTTAAGTCTAAATTGTTTTTAAAATGCTTTTGTGT  988
      || ||||||||| ||||||||   |||||| |||||||
seq2  TG-TTTAAGTCT-AATTGTTT---AAATGC-TTTGTGT  975

seq1: chr10_88083287_88083867
seq2: B6Ng01-057E14.g_69_654 (reverse)

seq1  ATAAATGCTACATAACTAAATGGCATATGCTG-AAGAGATAATAGCCAT-  48
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  ATAAATGCTACATAACTAAATGGCATATGCTGAAAGAGATAATAGCCATA  50

seq1  AAAAAATAATGATGA-GGCCAGTCATAGTGATGCACACCTATAATCTCAG  97
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAAAATAATGATGAGGGCCAGTCATAGTGATGCACACCTATAATCTCAG  100

seq1  CTCTCAGAAAGCAGAAGCTATTTCCCCAAGTTC-AAGGCCAGCCTGGTCT  146
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTCAGAAAGCAGAAGCTATTTCCCCAAGTTCAAAGGCCAGCCTGGTCT  150

seq1  ACATAATGCATTCCAGGCCAGCCAGGGCTACAGAGTAAAACCTGTCTC-A  195
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACATAATGCATTCCAGGCCAGCCAGGGCTACAGAGTAAAACCTGTCTCAA  200

seq1  AAACTCAAAAAATAATAATTAAAAAAGTAGTTATACATATTAATATGAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAAAATAATAATTAAAAAAGTAGTTATACATATTAATATGAAA  250

seq1  CAATGTATTTACACACCTTGAGAGAAGATTTGCTGCTGACCTGTATTATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATTTACACACCTTGAGAGAAGATTTGCTGCTGACCTGTATTATA  300

seq1  ATATCTTCTCATTTTTCACGTCATGTATTATTTGCAGCCAGGATTTAGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCTCATTTTTCACGTCATGTATTATTTGCAGCCAGGATTTAGAA  350

seq1  AAGAAAGAAAACAGACACTCATCTTTTAAAATATTTTTAATTATGTGTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAACAGACACTCATCTTTTAAAATATTTTTAATTATGTGTAT  400

seq1  GTGCATATGCACATATCTGCGGGGTCCAGAAGAGGGCATCAGAGTCCCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATGCACATATCTGCGGGGTCCAGAAGAGGGCATCAGAGTCCCTG  450

seq1  GAGCTGGAGTTACAGGTGGTTTGTGTATTGCCCAATATGGAAATGAAGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAGTTACAGGTGGTTTGTGTATTGCCCAATATGGAAATGAAGCT  500

seq1  GATGACATCACCCGTAATGCCAACCAGGGGGATGTTATGACAAAGGGACC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATCACCCGTAATGCCAACCAGGGGGATGTTATGACAAAGGGACC  550

seq1  TTAAGTCTGAGGACACCTGGTCTATATAATGAATTC  581
      ||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTGAGGACACCTGGTCTATATAATGAATTC  586